mRNA_H-elongata_contig89453.16446.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89453.16446.1
Unique NamemRNA_H-elongata_contig89453.16446.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89453.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89453contigH-elongata_contig89453:1294..1691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89453.16446.1prot_H-elongata_contig89453.16446.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89453 1367..1691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.8553467-UTR-H-elongata_contig89453:1293..13661622931294.8553467-UTR-H-elongata_contig89453:1293..1366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89453 1294..1366 +
1691679777.509485-UTR-H-elongata_contig89453:1293..13661691679777.509485-UTR-H-elongata_contig89453:1293..1366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89453 1294..1366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.873379-CDS-H-elongata_contig89453:1366..15471622931294.873379-CDS-H-elongata_contig89453:1366..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89453 1367..1547 +
1691679777.520855-CDS-H-elongata_contig89453:1366..15471691679777.520855-CDS-H-elongata_contig89453:1366..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89453 1367..1547 +
1622931294.8908677-CDS-H-elongata_contig89453:1623..16911622931294.8908677-CDS-H-elongata_contig89453:1623..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89453 1624..1691 +
1691679777.5313616-CDS-H-elongata_contig89453:1623..16911691679777.5313616-CDS-H-elongata_contig89453:1623..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89453 1624..1691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89453.16446.1

>prot_H-elongata_contig89453.16446.1 ID=prot_H-elongata_contig89453.16446.1|Name=mRNA_H-elongata_contig89453.16446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MQRDHACAAYIAQLPVYLMQRGHTCAAYIAHFPVYLTRKGAIIVHRGIRT
RDISFVGNFRGGSTIVRFDTLLVESFSLSVVVV
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mRNA from alignment at H-elongata_contig89453:1294..1691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89453.16446.1 ID=mRNA_H-elongata_contig89453.16446.1|Name=mRNA_H-elongata_contig89453.16446.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=398bp|location=Sequence derived from alignment at H-elongata_contig89453:1294..1691+ (Himanthalia elongata Himel1 dioecious)
CCTCTCACGGTGCTAAGGAGGCGTGGATGTTCGGAGAGGTCGTTCCTCTT
CTACCTAGTTCCCAGTTTATCTGATGCAGAGAGACCATGCATGTGCTGCT
TACATCGCTCAGCTCCCAGTTTATCTGATGCAGAGAGGACATACATGTGC
TGCTTACATCGCTCATTTCCCAGTTTATCTGACGCGGAAAGGCGCCATTA
TCGTGCATAGGGGGATTCGAACACGCGACATTTCCTTTGTCGGAAATTTC
AGGGGCTAATCTTTTCAACTCACTAAGTCGGCGCTGACTAAATGGGTTTA
TAGGATTAGTCCCTGAAATTTCCGACACAGGGGGATCAACTATCGTCAGG
TTCGATACTTTGCTGGTGGAGAGTTTCTCGTTGTCTGTCGTTGTTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig89453:1294..1691+

>mRNA_H-elongata_contig89453.16446.1 ID=mRNA_H-elongata_contig89453.16446.1|Name=mRNA_H-elongata_contig89453.16446.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig89453:1294..1691+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAGAGACCATGCATGTGCTGCTTACATCGCTCAGCTCCCAGTTTA
TCTGATGCAGAGAGGACATACATGTGCTGCTTACATCGCTCATTTCCCAG
TTTATCTGACGCGGAAAGGCGCCATTATCGTGCATAGGGGGATTCGAACA
CGCGACATTTCCTTTGTCGGAAATTTCAGGGATGCAGAGAGACCATGCAT
GTGCTGCTTACATCGCTCAGCTCCCAGTTTATCTGATGCAGAGAGGACAT
ACATGTGCTGCTTACATCGCTCATTTCCCAGTTTATCTGACGCGGAAAGG
CGCCATTATCGTGCATAGGGGGATTCGAACACGCGACATTTCCTTTGTCG
GAAATTTCAGGGGGGGATCAACTATCGTCAGGTTCGATACTTTGCTGGTG
GAGAGTTTCTCGTTGTCTGTCGTTGTTGTCGGGGATCAACTATCGTCAGG
TTCGATACTTTGCTGGTGGAGAGTTTCTCGTTGTCTGTCGTTGTTGTC
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