mRNA_H-elongata_contig89393.16442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89393.16442.1
Unique NamemRNA_H-elongata_contig89393.16442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.150e-39
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 RDMTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            R+M VSF+MP+KYT  TLP+PK+  VKIK VGAHRMVA+RFRG SPDE KVA VSR+L++ALE E L PKG L+VYQY PPFMPGFLR NEVAV+V
Sbjct:  144 RNMKVSFVMPKKYTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRELFQALEGEGLTPKGGLLVYQYQPPFMPGFLRTNEVAVRV 239          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A7S0RNX4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RNX4_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 9.790e-21
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            V+F MP KYTP TLP+PK+  V ++ V +  + A+ F G  P EA+VA  +R L   LE E LK  G L V+QYHPPF PGF+R NEV ++V
Sbjct:  156 VAFTMPSKYTPATLPKPKDPDVVVREVPSRTLAALGFSGNLPSEARVADKARALRALLEAEGLKAHGPLHVWQYHPPFAPGFVRVNEVLLEV 247          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A7S1SXM1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SXM1_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 4.200e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            VSFMMP KY  +TLP+P +  + IK   A R+ AIR+ G SPD+ KVA +++ L   L+     P G  M++QYHPPF P F+R+NEV ++V
Sbjct:   58 VSFMMPSKYRMDTLPQPHDDAICIKERPACRLAAIRWTGASPDKGKVAEMAQRLRAKLQAAGEMPHGHPMLWQYHPPFAPAFMRQNEVLLRV 149          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A2V0P5D1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5D1_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 9.760e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            +SF+MP KYT ETLPRP +  V+IK V AH + A+ FRG+  +   V +  + L   L+ E + P+G + + QYHPPF  G  R NEV  ++
Sbjct:  156 MSFVMPSKYTKETLPRPNDPSVEIKEVPAHTVAALTFRGQVRNRTVVEQRKQQLLEILKAEGITPEGAVQLNQYHPPFTYGIQRVNEVLFRI 247          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A3N5HYT6_9BACT (Heme-binding protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N5HYT6_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.310e-15
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    4 DMTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            + T+SF+MP +YT ETLP P+++ +   ++  HR   I F GR  DEA   +   +L   L + ++KPK   ++ QY+PP++PGF+R+NE+ V +
Sbjct:  110 EYTISFVMPAEYTLETLPIPEDKNITFNKIEPHRAAVISFSGRM-DEALANKKIAELRGWLGKNNMKPKSNFIMAQYNPPWIPGFMRKNEIMVDI 203          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A1V4YYL5_9EURY (SOUL heme-binding protein n=1 Tax=Methanocella sp. PtaU1.Bin125 TaxID=1811677 RepID=A0A1V4YYL5_9EURY)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEV 276
            +SF+MP +YT +TLPRP N  ++ + VG H +  +RF G S  E +V    R L   ++   L PK    + +Y PP++PGF+RRNEV
Sbjct:   96 ISFVMPGRYTLDTLPRPDNENIRFREVGDHNVAVVRFSGHS-HEPRVQEKMRQLVDWMQTNGLVPKSCCRLARYDPPWIPGFMRRNEV 182          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: E3FRQ9_STIAD (SOUL heme-binding family protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) TaxID=378806 RepID=E3FRQ9_STIAD)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-14
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            ++F+MP ++T E+LP P +  ++++ V A RM A+RF GR+ +EA V   + +L   L R+ L   G+ ++ QYH PFMP FLRRNE+ V+V
Sbjct:  142 MTFVMPSEFTLESLPVPLDARIRLEAVAAKRMAALRFSGRASEEA-VKAWTAELMDRLHRQRLHAVGEPILAQYHSPFMPPFLRRNEILVEV 232          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A1D2W953_9EURY (SOUL heme-binding protein n=3 Tax=Methanobacteriaceae TaxID=2159 RepID=A0A1D2W953_9EURY)

HSP 1 Score: 74.3 bits (181), Expect = 2.520e-14
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            +SF MP KYT +TLP P ++ +  K     +   ++F+GR  ++    ++  +L + L +  +KPK + MV QY+ P +PGFLRRNEV V+V
Sbjct:  110 ISFAMPSKYTMDTLPEPNDKRIHFKEFKNQKNAVLKFKGRVKEKLAAEKIE-ELKKWLSKNQIKPKSRFMVAQYNHPAVPGFLRRNEVIVEV 200          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: D1Z2N5_METPS (Putative heme-binding protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) TaxID=304371 RepID=D1Z2N5_METPS)

HSP 1 Score: 73.9 bits (180), Expect = 2.770e-14
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            +SF+MP  Y+ ETLP PK++ +  ++V  HR   I+F GR  +E    ++  +L + L    L+P    ++ Q++PP++PGF+R NE+ V++
Sbjct:   97 ISFVMPSNYSMETLPEPKDKSITFRQVPPHRAAVIKFSGRMKEELAEKKIE-ELKQWLRNNHLEPMSNFIMAQFNPPWIPGFMRHNEIMVEI 187          
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A2I0PKB2_9EURY (SOUL heme-binding protein n=1 Tax=Methanobacteriales archaeon HGW-Methanobacteriales-1 TaxID=2013815 RepID=A0A2I0PKB2_9EURY)

HSP 1 Score: 72.8 bits (177), Expect = 9.990e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
            +SF MP KYT ETLP P +  +K K V   +M  +RF+GR   +     V  +L   LE+ ++K K   ++ QY+ P +PGFLRRNEV V+V
Sbjct:  111 ISFTMPSKYTLETLPIPDDERIKFKEVKNQKMAVLRFKGRVHHKLANMEVE-ELKNWLEKNNIKAKTNFIIAQYNNPAVPGFLRRNEVMVEV 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU1_ECTSI2.150e-3972.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0RNX4_9CHLO9.790e-2151.09Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S1SXM1_9CHLO4.200e-1947.83Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2V0P5D1_9CHLO9.760e-1643.48Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A3N5HYT6_9BACT1.310e-1538.95Heme-binding protein n=1 Tax=bacterium TaxID=18692... [more]
A0A1V4YYL5_9EURY1.370e-1442.05SOUL heme-binding protein n=1 Tax=Methanocella sp.... [more]
E3FRQ9_STIAD1.710e-1443.48SOUL heme-binding family protein n=2 Tax=Stigmatel... [more]
A0A1D2W953_9EURY2.520e-1439.13SOUL heme-binding protein n=3 Tax=Methanobacteriac... [more]
D1Z2N5_METPS2.770e-1435.87Putative heme-binding protein n=1 Tax=Methanocella... [more]
A0A2I0PKB2_9EURY9.990e-1443.48SOUL heme-binding protein n=1 Tax=Methanobacterial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89393contigH-elongata_contig89393:1689..2641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue8.5e-31
Seed eggNOG ortholog2880.D7FVU1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs2CY9I@1,2S2YK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSOUL haem-binding protein
Ec32 orthologEc-01_002130.1
Exons3
Model size291
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89393.16442.1prot_H-elongata_contig89393.16442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89393 1689..2635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.550025-CDS-H-elongata_contig89393:1688..18351622931294.550025-CDS-H-elongata_contig89393:1688..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 1689..1835 -
1691679777.33116-CDS-H-elongata_contig89393:1688..18351691679777.33116-CDS-H-elongata_contig89393:1688..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 1689..1835 -
1622931294.563059-CDS-H-elongata_contig89393:2147..22551622931294.563059-CDS-H-elongata_contig89393:2147..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 2148..2255 -
1691679777.3530977-CDS-H-elongata_contig89393:2147..22551691679777.3530977-CDS-H-elongata_contig89393:2147..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 2148..2255 -
1622931294.5764623-CDS-H-elongata_contig89393:2605..26351622931294.5764623-CDS-H-elongata_contig89393:2605..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 2606..2635 -
1691679777.3785233-CDS-H-elongata_contig89393:2605..26351691679777.3785233-CDS-H-elongata_contig89393:2605..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89393 2606..2635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.5893836-UTR-H-elongata_contig89393:2635..26411622931294.5893836-UTR-H-elongata_contig89393:2635..2641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89393 2636..2641 -
1691679777.3968837-UTR-H-elongata_contig89393:2635..26411691679777.3968837-UTR-H-elongata_contig89393:2635..2641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89393 2636..2641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89393.16442.1

>prot_H-elongata_contig89393.16442.1 ID=prot_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVA
RVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV*
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mRNA from alignment at H-elongata_contig89393:1689..2641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89393.16442.1 ID=mRNA_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=953bp|location=Sequence derived from alignment at H-elongata_contig89393:1689..2641- (Himanthalia elongata Himel1 dioecious)
CGAGACATGACGGTTTCATTTATGATGCCGCGAAAGGTGCAGCATTCGTG CTAAATACACCCCCTTTGTACTTGGAAACGTTCCGTCGGCGCTGCATGGC TCCATTCCTAACAATTGTTGCATGATTGGTATCGTAAAAAGACACGTGCT GCTACTATTATTGTATCCACCAGGCCGAACCGTAAACCACACGCACTAGT GAGATAGTAGTTCGCTATGACAAATAAACAAAGAAAATAGAAATGCCCAC CGCTTTGTAAAAACCTCTTTTTTTCCTTTTTTTCGGCTTTCGTGTTTCGC ACCGGCCAGTCCTGCTGCTGCTCGACGCCCCCCGTCCCGCTACTGTCATA ATAATGTGTGCTGTTTCAACTCTATTTTCATACCAGTACACGCCGGAGAC GTTGCCCAGGCCGAAGAACAGGGGTGTCAAGATCAAGCGAGTTGGCGCAC ATCGCATGGTGGCGATACGCTTCCGCGGACGTTCCCCAGACGAGGTGGGA GCAAATATCTTCCCGCCGCGCTCGTGAAGAGATCAACACCCCCCGCACTA CCCCAGCCGCCGACCTAGTTTCATGGCTCTCCAAAGAAAGCCGCGAGTGA TTGTTTAGAGTATCCCGCTCCTTCTTGCTGCCAGGCTCAATCTTGTATCG TGTCCTGGACTCATGCGCGCTTATGGTGCATTCCTGTTGGCGTACCATAC TAGATCGAGTTGTTTTCATGTAAAGGAGCTCTTCGGCATAATAACAGCGG ACAGAGGGCGTACTACCGAAACCGTCTACCCTCCCATGTATTGCTGTTGT CGCCAGGCCAAGGTTGCACGCGTTTCCCGAGACTTGTACCGAGCTCTCGA GAGGGAGAGTCTCAAGCCAAAGGGAAAGCTGATGGTGTATCAGTATCACC CACCGTTCATGCCGGGATTTCTTCGCCGGAACGAGGTTGCGGTCCAAGTG TAG
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Coding sequence (CDS) from alignment at H-elongata_contig89393:1689..2641-

>mRNA_H-elongata_contig89393.16442.1 ID=mRNA_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig89393:1689..2641- (Himanthalia elongata Himel1 dioecious)
ATGACGGTTTCATTTATGATGCCGCGAAAGATGACGGTTTCATTTATGAT
GCCGCGAAAGTACACGCCGGAGACGTTGCCCAGGCCGAAGAACAGGGGTG
TCAAGATCAAGCGAGTTGGCGCACATCGCATGGTGGCGATACGCTTCCGC
GGACGTTCCCCAGACGAGTACACGCCGGAGACGTTGCCCAGGCCGAAGAA
CAGGGGTGTCAAGATCAAGCGAGTTGGCGCACATCGCATGGTGGCGATAC
GCTTCCGCGGACGTTCCCCAGACGAGGCCAAGGTTGCACGCGTTTCCCGA
GACTTGTACCGAGCTCTCGAGAGGGAGAGTCTCAAGCCAAAGGGAAAGCT
GATGGTGTATCAGTATCACCCACCGTTCATGCCGGGATTTCTTCGCCGGA
ACGAGGTTGCGGTCCAAGTGTAGGCCAAGGTTGCACGCGTTTCCCGAGAC
TTGTACCGAGCTCTCGAGAGGGAGAGTCTCAAGCCAAAGGGAAAGCTGAT
GGTGTATCAGTATCACCCACCGTTCATGCCGGGATTTCTTCGCCGGAACG
AGGTTGCGGTCCAAGTGTAG
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