mRNA_H-elongata_contig8938.16441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8938.16441.1
Unique NamemRNA_H-elongata_contig8938.16441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.510e-56
Identity = 101/156 (64.74%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   28 MVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENG-VYTHVVCFNHRFKSTTSIVFNESGVKR 492
            MVHA+R SARVP+K++C+TTM  VKK MM KVS L++GE VCITSDGWTS  NDTYMSLT +LIT AW+L+T+SV+C KS GTTTG+ALAAGI A V KHG+ GKV A+TTDC+PS+VKM R+L  +  V T + C N+R +ST+SIVFN   VK+
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKK 156          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.970e-35
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:   28 MVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENG-VYTHVVCFNHRFKSTTSIVFN 474
            MV AL   A+VP +RE ++ M  VK  + S+V+ +L  E V IT+DGWTS  N++YMSLTV+ I   W+L  +S++C K  GTTTGE LAA +   V +H + G+VIA  TDC+PS++K  R+LE +G   +H+ C NHR +STTS VFN
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFN 150          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.170e-34
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 1
Query:   19 FRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGV-YTHVVCFNHRFKSTTSIVFN 474
            F  +V  L   AR P +R  +  M ++KK++ S+V+ +L  E+V IT+DGWTS  N++YMSLTV+ I   W+L  +S+NC K  G+T GE LA  IT+ + +HG+ G+V A  TDC+PS+VK  R+LE  G    H+ C NHR +STTS VFN
Sbjct:   34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFN 186          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.780e-34
Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNHRFKSTTSIVFNESGVKR 492
            M+ +  F  MV  L+S A VP KR  +  +  +KK +  +V   L GEHV +TSDGWTS  NDTYM  T + I+  ++L+ + V C K  G TTGE L   + A + ++G+  + +A TTDC+PS+VK  R+LEEN   TH+ CF HR +S TS  F   GV +
Sbjct:    1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSK 164          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.790e-25
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  133 LKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNHRFKSTTSIVFNESGVKR 492
            + GEHV +TSDGWT   NDTYMS T + I+  ++L+ + + C K    T GE L   + A + ++G+ G+ +AITTDC+ S+VK  R+LEEN   TH+ CF HR +S TS  F   GV +
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSK 120          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI0008116268 (zinc finger BED domain-containing protein 1-like n=4 Tax=Rhagoletis TaxID=28609 RepID=UPI0008116268)

HSP 1 Score: 62.4 bits (150), Expect = 2.610e-8
Identity = 48/158 (30.38%), Postives = 77/158 (48.73%), Query Frame = 1
Query:    1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKG---------EHVCITSDGWTSYGNDTYMSLTVSLITRAWEL--ITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
            ++ DT FR ++H +    ++P K    T + DV    + KV E LKG         E+V IT+DGWTS  N++Y+++T   I   ++L    +S +        T   +A  I   + + G+ GKV++I TD   ++ K   +LE      H  CF H
Sbjct:  118 IVNDTGFRALMHKMDPRYKLPSK----TYLRDVS---LPKVYESLKGQLQSALECVEYVAITTDGWTSKANESYLTITCHFINTEFQLNSAVLSTSXXXXXXXHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVK----HFPCFAH 264          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI001787775F (zinc finger BED domain-containing protein 1-like n=2 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001787775F)

HSP 1 Score: 61.2 bits (147), Expect = 4.250e-8
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 1
Query:    1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKG---------EHVCITSDGWTSYGNDTYMSLTVSLITRAWEL--ITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
            ++ DT FR ++H +    ++P K    T + DV    + KV E LKG         E+V IT+DGWTS  N++Y+++T   I   ++L    +S +   ++   T   +A  I   + + G+ GKV++I TD   ++ K   +LE      H  CF H
Sbjct:  118 IVNDTGFRALMHKMDPRYKLPSK----TYLRDVS---LLKVYESLKGQLQSALECVEYVAITTDGWTSKTNESYLTITCHFINTEFQLNSAVLSTSTLLTSTNHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVK----HFPCFAH 264          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-6
Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 1
Query:    1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMM-SKVSELLKGEH-VCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
            ++ D  F+ ++  L    ++P ++    +M  +  H    KV  L+     VC+T+DGWTS  N+++M +T   I     L ++ + C K     T + LA  +   + K  I+ KV A+ +D  P+IV   R  E N  + HV CF H
Sbjct:   12 IVEDQEFQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFAVCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIR--ECN--FRHVSCFAH 156          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI0018A839AD (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A839AD)

HSP 1 Score: 56.2 bits (134), Expect = 3.520e-6
Identity = 32/113 (28.32%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  103 KHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
            KHM+  +      +++CIT+DGWTS  N++Y+S+T   I+  W+  T+ ++C K+    T + L   I   + + G+  K+  + +D   +IV   +  +    +TH+ C  H
Sbjct:  152 KHMLRDI------DNICITTDGWTSISNESYISITAHFISPDWKQKTVFISCFKTMKDHTAQNLKDEICQVLQEWGMDSKITCVLSDNAANIVAAIKKTD----WTHLSCLAH 254          
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI00143F1A88 (zinc finger BED domain-containing protein 1-like n=3 Tax=Drosophila miranda TaxID=7229 RepID=UPI00143F1A88)

HSP 1 Score: 55.8 bits (133), Expect = 4.850e-6
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  121 VSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
            + EL     VC+T+DGWTS  N++Y+++TV  I     ++T ++ C     + T   L + +   V +  +K KV AI +D   +I    R     G ++H+ CF H
Sbjct:  149 IEELRAATAVCLTTDGWTSITNESYLAVTVHFIDEESTMLTYTIACQAFEASHTAANLCSFLEKIVTEWDLKNKVAAIASDNAHNIALAIR----TGNWSHIRCFAH 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE1.510e-5664.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.970e-3549.33Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.170e-3447.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE8.780e-3443.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE3.790e-2545.00Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI00081162682.610e-830.38zinc finger BED domain-containing protein 1-like n... [more]
UPI001787775F4.250e-830.38zinc finger BED domain-containing protein 1-like n... [more]
UPI000DC158A41.370e-629.53zinc finger BED domain-containing protein 1-like n... [more]
UPI0018A839AD3.520e-628.32E3 SUMO-protein ligase ZBED1-like n=1 Tax=Lucilia ... [more]
UPI00143F1A884.850e-630.84zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8938contigH-elongata_contig8938:7685..8182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue6e-32
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.4882188-CDS-H-elongata_contig8938:7684..81821622931294.4882188-CDS-H-elongata_contig8938:7684..8182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8938 7685..8182 -
1691679777.3118312-CDS-H-elongata_contig8938:7684..81821691679777.3118312-CDS-H-elongata_contig8938:7684..8182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8938 7685..8182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8938.16441.1prot_H-elongata_contig8938.16441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8938 7685..8182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8938.16441.1

>prot_H-elongata_contig8938.16441.1 ID=prot_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHV
CITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAA
GITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNHRFK
STTSIVFNESGVKRP*
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mRNA from alignment at H-elongata_contig8938:7685..8182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8938.16441.1 ID=mRNA_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig8938:7685..8182- (Himanthalia elongata Himel1 dioecious)
ATGCTTACGGACACGAGCTTCCGCAGGATGGTTCATGCCCTTCGCTCAAG TGCCCGCGTTCCAGACAAGAGAGAGTGTATCACCACCATGCACGATGTGA AGAAACATATGATGAGCAAGGTTTCTGAGTTGCTGAAGGGCGAGCACGTG TGCATCACCTCGGACGGCTGGACCTCTTACGGTAATGACACCTACATGTC GCTGACAGTGAGTCTCATAACCCGCGCGTGGGAGCTCATCACTATCTCGG TGAACTGCGGCAAGTCAGCAGGAACGACGACTGGTGAGGCTCTGGCCGCC GGTATCACGGCCGCCGTAGTCAAGCATGGCATCAAAGGCAAGGTCATAGC GATTACAACTGACTGTAAGCCTTCGATCGTGAAGATGAGGCGCATTCTCG AAGAAAACGGTGTCTACACCCACGTCGTCTGCTTCAACCATCGATTCAAA AGCACTACCTCCATTGTGTTCAACGAGTCGGGGGTCAAGAGGCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig8938:7685..8182-

>mRNA_H-elongata_contig8938.16441.1 ID=mRNA_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig8938:7685..8182- (Himanthalia elongata Himel1 dioecious)
ATGCTTACGGACACGAGCTTCCGCAGGATGGTTCATGCCCTTCGCTCAAG
TGCCCGCGTTCCAGACAAGAGAGAGTGTATCACCACCATGCACGATGTGA
AGAAACATATGATGAGCAAGGTTTCTGAGTTGCTGAAGGGCGAGCACGTG
TGCATCACCTCGGACGGCTGGACCTCTTACGGTAATGACACCTACATGTC
GCTGACAGTGAGTCTCATAACCCGCGCGTGGGAGCTCATCACTATCTCGG
TGAACTGCGGCAAGTCAGCAGGAACGACGACTGGTGAGGCTCTGGCCGCC
GGTATCACGGCCGCCGTAGTCAAGCATGGCATCAAAGGCAAGGTCATAGC
GATTACAACTGACTGTAAGCCTTCGATCGTGAAGATGAGGCGCATTCTCG
AAGAAAACGGTGTCTACACCCACGTCGTCTGCTTCAACCATCGATTCAAA
AGCACTACCTCCATTGTGTTCAACGAGTCGGGGGTCAAGAGGCCATGAAT
GCTTACGGACACGAGCTTCCGCAGGATGGTTCATGCCCTTCGCTCAAGTG
CCCGCGTTCCAGACAAGAGAGAGTGTATCACCACCATGCACGATGTGAAG
AAACATATGATGAGCAAGGTTTCTGAGTTGCTGAAGGGCGAGCACGTGTG
CATCACCTCGGACGGCTGGACCTCTTACGGTAATGACACCTACATGTCGC
TGACAGTGAGTCTCATAACCCGCGCGTGGGAGCTCATCACTATCTCGGTG
AACTGCGGCAAGTCAGCAGGAACGACGACTGGTGAGGCTCTGGCCGCCGG
TATCACGGCCGCCGTAGTCAAGCATGGCATCAAAGGCAAGGTCATAGCGA
TTACAACTGACTGTAAGCCTTCGATCGTGAAGATGAGGCGCATTCTCGAA
GAAAACGGTGTCTACACCCACGTCGTCTGCTTCAACCATCGATTCAAAAG
CACTACCTCCATTGTGTTCAACGAGTCGGGGGTCAAGAGGCCATGA
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