mRNA_H-elongata_contig89367.16438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89367.16438.1
Unique NamemRNA_H-elongata_contig89367.16438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A6H5KJS5_9PHAE (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJS5_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 5.800e-60
Identity = 98/110 (89.09%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    4 IQSPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEYLV 333
            +QSPLLVMVEAGA SVVGRSWDVRLD ELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERV+ +MSPLPGGFLRYVEERFPQLLMHCAKVTG+LL++ER+F++YLV
Sbjct: 1177 VQSPLLVMVEAGAHSVVGRSWDVRLDAELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVQAMMSPLPGGFLRYVEERFPQLLMHCAKVTGSLLTEERIFRDYLV 1286
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: W7U7T2_9STRA (Serine threonine protein kinase endoribonuclease ire1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7T2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.250e-34
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEYLVP 336
            S L + VEAGA  VVG +WD RLD  L  D  RYRKYD +SVRD LR++RNKRHHFHELPE V+ +++PLPGG  RY +  FP+LLMHC  V   LL+ ++LF+ Y+ P
Sbjct:  562 SLLALAVEAGAAEVVGSAWDARLDAGLLVDVNRYRKYDTASVRDCLRILRNKRHHFHELPEAVQRVLAPLPGGLYRYWQRHFPRLLMHCHGVCTRLLTRDKLFQTYMGP 670
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A4D9CQF7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQF7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.300e-34
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEYLVP 336
            S L + VEAGA  VVG +WD RLD  L  D  RYRKYD +SVRD LR++RNKRHHFHELPE V+ +++PLPGG  RY +  FP+LLMHC  V   LL+ ++LF+ Y+ P
Sbjct:  716 SLLALAVEAGAAEVVGSAWDARLDAGLLVDVNRYRKYDTASVRDCLRILRNKRHHFHELPEAVQRVLAPLPGGLYRYWQRHFPRLLMHCHGVCTRLLTRDKLFQTYMGP 824
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A836CAG8_9STRA (Ribonuclease 2-5A-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.680e-32
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHC 276
            S LL+ VE  A  VVGR+WD R+D  L EDAGRYR YD +S RD LR+VRNKRHHFHELP   + L++PLP G L YVE  FP+LLMHC
Sbjct:  180 SALLLCVERDAARVVGRAWDRRVDAALLEDAGRYRSYDRASARDFLRLVRNKRHHFHELPPAARALLAPLPSGLLHYVESLFPRLLMHC 268
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A7S2CW14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CW14_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.210e-32
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLF 318
            S +L  VEA A S+VG +WD RLD+ L +D  ++R+YD SSVRD LRV+RNKRHH+HELP RV+ L+ P P G   Y E+RFP+LL+HC  V    L  +R+F
Sbjct:   15 SIVLAAVEARAQSIVGVAWDERLDRGLIDDVSKWRRYDVSSVRDCLRVLRNKRHHWHELPNRVQQLLLPFPSGLDLYFEQRFPRLLLHCYNVAKLWLPHDRIF 117
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A7S3HDB2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDB2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.540e-31
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEY 327
            SP+++ VEAGA +V+G  WD RLD  L ED G++RKYD +SVRDLLRV+RNKRHHFHEL   +K  +  +P GF+ Y + RFPQL++HCA V    LS E LF+ +
Sbjct: 1541 SPMVLAVEAGALTVLGSRWDRRLDVLLLEDLGKFRKYDTTSVRDLLRVMRNKRHHFHELSLPLKEAIGSIPDGFMNYFDVRFPQLVLHCAYVAHRYLSGESLFRPW 1646
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: S9Q0S3_SCHOY (Non-specific serine/threonine protein kinase n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9Q0S3_SCHOY)

HSP 1 Score: 113 bits (282), Expect = 8.190e-27
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEYLV 333
            SPLL  +E  A  VVG+ W   L   L ++ GRYRKYD S + D+LRV+RNKRHH+ +LP+ V+ L+  LP GF  Y  E+FP LL+HC  V  A LS+E  F+ Y +
Sbjct:  948 SPLLQCLENNAILVVGKDWMTELHSSLVDNLGRYRKYDGSKILDILRVLRNKRHHYQDLPDAVRALLGSLPDGFTAYFTEKFPLLLLHCFNVVKAELSEEPQFQRYFM 1055
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: IRE1_SCHPO (Sensor for unfolded proteins in the ER ire1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=IRE1_SCHPO)

HSP 1 Score: 113 bits (282), Expect = 8.190e-27
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEYL 330
            SPLL M+E  + SV+G +W   L   L ++ G+YRKYD S + D+LRV+RNKRHH+ +LPE V+ ++  LP GF  Y  E+FP LL+HC  +   +L +E  FK YL
Sbjct:  964 SPLLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPESVRRVLGDLPDGFTSYFVEKFPMLLLHCYHLVKDVLYEESQFKRYL 1070
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: S9XB87_SCHCR (Non-specific serine/threonine protein kinase n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9XB87_SCHCR)

HSP 1 Score: 112 bits (279), Expect = 2.080e-26
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALLSDERLFKEY 327
            SPLL  +E  A  VVG +W   L   L ++ GRYRKYD S V D+LRV+RNKRHH+ +LPE V+ ++  +P GF  Y  E+FP LL+HC  V  A + DE  FK Y
Sbjct:  945 SPLLQCLENNAQLVVGENWMADLHSSLIDNLGRYRKYDGSKVLDILRVLRNKRHHYQDLPENVRAILGSVPDGFTAYFTEKFPSLLLHCFHVIKAEIIDEPQFKRY 1050
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BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Match: A0A397URQ4_9GLOM (Kinase-like domain-containing protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397URQ4_9GLOM)

HSP 1 Score: 110 bits (276), Expect = 3.060e-26
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   10 SPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLRVVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGAL--LSDERLFKEY 327
            SPLL  +E G G V+G  W  R+D+   E+ G+YRKYD S +RDLLR +RNK+HH+ +LPE+VK  +  +P GFL Y   RFP L++H   V      L +E +FK Y
Sbjct:  390 SPLLQRLEQGVGKVIGSDWHKRIDKVFIENLGKYRKYDGSKIRDLLRALRNKKHHYQDLPEQVKRALGHIPDGFLYYFTSRFPNLMLHVYYVIAEFENLKNESIFKHY 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89367.16438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJS5_9PHAE5.800e-6089.09Non-specific serine/threonine protein kinase n=2 T... [more]
W7U7T2_9STRA2.250e-3457.80Serine threonine protein kinase endoribonuclease i... [more]
A0A4D9CQF7_9STRA2.300e-3457.80Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CAG8_9STRA1.680e-3264.04Ribonuclease 2-5A-domain-containing protein (Fragm... [more]
A0A7S2CW14_9STRA7.210e-3254.37Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3HDB2_9STRA7.540e-3155.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
S9Q0S3_SCHOY8.190e-2749.07Non-specific serine/threonine protein kinase n=1 T... [more]
IRE1_SCHPO8.190e-2747.66Sensor for unfolded proteins in the ER ire1 n=1 Ta... [more]
S9XB87_SCHCR2.080e-2650.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A397URQ4_9GLOM3.060e-2647.22Kinase-like domain-containing protein n=1 Tax=Giga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89367contigH-elongata_contig89367:501..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score113.2
Seed ortholog evalue7.7e-23
Seed eggNOG ortholog4896.SPAC167.01.1
Preferred nameIRE1
KEGG koko:K08852
KEGG Pathwayko04140,ko04141,ko04210,ko04932,ko05010,map04140,map04141,map04210,map04932,map05010
GOsGO:0000166,GO:0000956,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0006020,GO:0006066,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0017076,GO:0019222,GO:0019439,GO:0019538,GO:0019751,GO:0022607,GO:0023052,GO:0030176,GO:0030554,GO:0030968,GO:0031224,GO:0031227,GO:0031505,GO:0031984,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036290,GO:0036498,GO:0042175,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044262,GO:0044265,GO:0044267,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046483,GO:0046700,GO:0046777,GO:0046983,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051259,GO:0051260,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0098827,GO:0140096,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901615
EggNOG free text desc.IRE protein kinase
EggNOG OGs38FA9@33154,3MDCQ@451866,3NUNM@4751,3QPRE@4890,COG0515@1,KOG1027@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.2667754-CDS-H-elongata_contig89367:500..7361622931294.2667754-CDS-H-elongata_contig89367:500..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89367 501..736 +
1691679777.2316017-CDS-H-elongata_contig89367:500..7361691679777.2316017-CDS-H-elongata_contig89367:500..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89367 501..736 +
1622931294.2820675-CDS-H-elongata_contig89367:1198..12981622931294.2820675-CDS-H-elongata_contig89367:1198..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89367 1199..1298 +
1691679777.2437081-CDS-H-elongata_contig89367:1198..12981691679777.2437081-CDS-H-elongata_contig89367:1198..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89367 1199..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89367.16438.1prot_H-elongata_contig89367.16438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89367 501..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89367.16438.1

>prot_H-elongata_contig89367.16438.1 ID=prot_H-elongata_contig89367.16438.1|Name=mRNA_H-elongata_contig89367.16438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MIQSPLLVMVEAGAGSVVGRSWDVRLDQELTEDAGRYRKYDFSSVRDLLR
VVRNKRHHFHELPERVKGLMSPLPGGFLRYVEERFPQLLMHCAKVTGALL
SDERLFKEYLVP
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mRNA from alignment at H-elongata_contig89367:501..1298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89367.16438.1 ID=mRNA_H-elongata_contig89367.16438.1|Name=mRNA_H-elongata_contig89367.16438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig89367:501..1298+ (Himanthalia elongata Himel1 dioecious)
ATGATACAATCGCCGCTACTGGTGATGGTCGAAGCTGGGGCCGGCTCCGT
CGTTGGGCGATCCTGGGACGTGCGCCTCGACCAGGAGCTGACGGAGGACG
CCGGGCGCTACCGCAAGTACGACTTCAGCAGCGTGCGCGATCTGTTGAGG
GTCGTGCGCAACAAGCGTCACCACTTCCACGAGCTCCCCGAGCGGGTGAA
AGGGTTGATGAGTCCTCTTCCCGGAGGCTTCCTCCGGTGAGCAAGTGGGA
GGTTGGAAAGAAGAAAAAGGAGTTCGATTGCTGTTTTTTTCCCCCCTGTT
TTGTTGACTTGGTTTGCTGTAACGATGCAATGGTTGAAAACGGAGGGCGG
AGAGGGGGGCGCGCAAACCTCAAGCCTCAAGCCTCCCTCACCCCCCTTTC
GCGGTGAGTCTTCTTCAATGTATTCTTCAGCACGATCAGTCTCTTCGACC
GTGGATGAGCGGGCGCAACGGGCGGGTTGTCTTTTCATCTTATGCAAAGC
AAACGTCCTGGGGTGACACGCCCGCGACCACTGCTTGTCTCGGGGTGGTC
GAATGAATAGATGAAGACCCTTTTTGCCTTATTACTGGAGATGCAACGTC
GGAGTATAGAAAATATAACGTTGGAAGATCCCCTCGCCAATCACCGACCT
TAGTTCTCCCCTCTGGTCCCTCTGGTCTCTCTGTCTCTATCTCTTGAGGT
ACGTGGAGGAGCGCTTCCCACAGCTACTGATGCATTGCGCCAAGGTGACG
GGAGCTCTGCTCAGTGACGAGCGGCTCTTCAAGGAATATTTGGTGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig89367:501..1298+

>mRNA_H-elongata_contig89367.16438.1 ID=mRNA_H-elongata_contig89367.16438.1|Name=mRNA_H-elongata_contig89367.16438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig89367:501..1298+ (Himanthalia elongata Himel1 dioecious)
ATGATACAATCGCCGCTACTGGTGATGGTCGAAGCTGGGGCCGGCTCCGT
CGTTGGGCGATCCTGGGACGTGCGCCTCGACCAGGAGCTGACGGAGGACG
CCGGGCGCTACCGCAAGTACGACTTCAGCAGCGTGCGCGATCTGTTGAGG
GTCGTGCGCAACAAGCGTCACCACTTCCACGAGCTCCCCGAGCGGGTGAA
AGGGTTGATGAGTCCTCTTCCCGGAGGCTTCCTCCGATGATACAATCGCC
GCTACTGGTGATGGTCGAAGCTGGGGCCGGCTCCGTCGTTGGGCGATCCT
GGGACGTGCGCCTCGACCAGGAGCTGACGGAGGACGCCGGGCGCTACCGC
AAGTACGACTTCAGCAGCGTGCGCGATCTGTTGAGGGTCGTGCGCAACAA
GCGTCACCACTTCCACGAGCTCCCCGAGCGGGTGAAAGGGTTGATGAGTC
CTCTTCCCGGAGGCTTCCTCCGGTACGTGGAGGAGCGCTTCCCACAGCTA
CTGATGCATTGCGCCAAGGTGACGGGAGCTCTGCTCAGTGACGAGCGGCT
CTTCAAGGAATATTTGGTGCCCGTACGTGGAGGAGCGCTTCCCACAGCTA
CTGATGCATTGCGCCAAGGTGACGGGAGCTCTGCTCAGTGACGAGCGGCT
CTTCAAGGAATATTTGGTGCCC
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