mRNA_H-elongata_contig89356.16436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89356.16436.1
Unique NamemRNA_H-elongata_contig89356.16436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89356.16436.1 vs. uniprot
Match: D8LIB3_ECTSI (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB3_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.170e-10
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 GVKKLLSSCAGLGAARPDLRRAMALKSVDVMATRL 105
            GVKKLLSSC GL AARPDLRRAM+L+SVDVMATRL
Sbjct:  303 GVKKLLSSCTGLSAARPDLRRAMSLRSVDVMATRL 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89356.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIB3_ECTSI3.170e-1088.57Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89356contigH-elongata_contig89356:57..163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D8LIB3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size107
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.133178-CDS-H-elongata_contig89356:56..1611622931294.133178-CDS-H-elongata_contig89356:56..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 57..161 +
1691679777.192089-CDS-H-elongata_contig89356:56..1611691679777.192089-CDS-H-elongata_contig89356:56..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 57..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89356.16436.1prot_H-elongata_contig89356.16436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89356 57..161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89356.16436.1

>prot_H-elongata_contig89356.16436.1 ID=prot_H-elongata_contig89356.16436.1|Name=mRNA_H-elongata_contig89356.16436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
GVKKLLSSCAGLGAARPDLRRAMALKSVDVMATRL
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mRNA from alignment at H-elongata_contig89356:57..163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89356.16436.1 ID=mRNA_H-elongata_contig89356.16436.1|Name=mRNA_H-elongata_contig89356.16436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=107bp|location=Sequence derived from alignment at H-elongata_contig89356:57..163+ (Himanthalia elongata Himel1 dioecious)
GGCGTGAAGAAGCTGCTTTCGTCGTGCGCGGGGCTGGGCGCAGCCAGGCC
CGACCTGAGGCGAGCGATGGCTCTCAAGAGCGTGGACGTAATGGCGACGC
GCCTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig89356:57..163+

>mRNA_H-elongata_contig89356.16436.1 ID=mRNA_H-elongata_contig89356.16436.1|Name=mRNA_H-elongata_contig89356.16436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig89356:57..163+ (Himanthalia elongata Himel1 dioecious)
GGCGTGAAGAAGCTGCTTTCGTCGTGCGCGGGGCTGGGCGCAGCCAGGCC
CGACCTGAGGCGAGCGATGGCTCTCAAGAGCGTGGACGTAATGGCGACGC
GCCTGGGCGTGAAGAAGCTGCTTTCGTCGTGCGCGGGGCTGGGCGCAGCC
AGGCCCGACCTGAGGCGAGCGATGGCTCTCAAGAGCGTGGACGTAATGGC
GACGCGCCTG
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