mRNA_H-elongata_contig89336.16434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89336.16434.1
Unique NamemRNA_H-elongata_contig89336.16434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89336.16434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89336contigH-elongata_contig89336:1401..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size263
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89336.16434.1prot_H-elongata_contig89336.16434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89336 1458..2125 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.9246838-UTR-H-elongata_contig89336:1400..14571622931293.9246838-UTR-H-elongata_contig89336:1400..1457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89336 1401..1457 +
1691679777.121416-UTR-H-elongata_contig89336:1400..14571691679777.121416-UTR-H-elongata_contig89336:1400..1457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89336 1401..1457 +
1622931293.9861295-UTR-H-elongata_contig89336:2125..21901622931293.9861295-UTR-H-elongata_contig89336:2125..2190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89336 2126..2190 +
1691679777.1555493-UTR-H-elongata_contig89336:2125..21901691679777.1555493-UTR-H-elongata_contig89336:2125..2190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89336 2126..2190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.9449723-CDS-H-elongata_contig89336:1457..15031622931293.9449723-CDS-H-elongata_contig89336:1457..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89336 1458..1503 +
1691679777.13692-CDS-H-elongata_contig89336:1457..15031691679777.13692-CDS-H-elongata_contig89336:1457..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89336 1458..1503 +
1622931293.9639308-CDS-H-elongata_contig89336:2030..21251622931293.9639308-CDS-H-elongata_contig89336:2030..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89336 2031..2125 +
1691679777.1465108-CDS-H-elongata_contig89336:2030..21251691679777.1465108-CDS-H-elongata_contig89336:2030..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89336 2031..2125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89336.16434.1

>prot_H-elongata_contig89336.16434.1 ID=prot_H-elongata_contig89336.16434.1|Name=mRNA_H-elongata_contig89336.16434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MKAAYQRPSCEGRLSGSWTRRRRYLIWTRLRARKCFSGLSRTPRTP*
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mRNA from alignment at H-elongata_contig89336:1401..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89336.16434.1 ID=mRNA_H-elongata_contig89336.16434.1|Name=mRNA_H-elongata_contig89336.16434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=790bp|location=Sequence derived from alignment at H-elongata_contig89336:1401..2190+ (Himanthalia elongata Himel1 dioecious)
GTTCAACATGTCAGCTCCAACTCTGAAATCAACAGCCCCTAAAGACCAGC
GGGCCCTATGAAGGCCGCATATCAGCGACCCTCTTGTGAAGGAAGACTGT
CAGGTAATTAATGATGTATAGTAATATTTCCATTATGAGAGCAGATGTGC
AAAGTTCATTCCGCTGTAATGAACCACCTCCATCAACTTCTTACATTAGT
AAGAGTTGCAAAAAAAAATTCCAGCCAATTTAAATTTTAATCGGGCTCTG
ATTGGTCGAAGGCTAGGCGAATCAGAGCCCGATTTACATATAAATTGTCT
GGAAAATTAAATATTTGTGACCCCGTTAATACCCGCCCCTAAGCCATGTG
TAAAACCTTCAATATTCTACACGCTAGCTCTATTTTTTCAAGACTTCTCG
AAGCGCTTTTCCACGTGATCCGCGGGGTTTCGTAATATTGTGGGATGTTC
TGCTGGTAGTCGATGAATCAGCGGAGTGTGGGAACATGAGGTCACAACCC
CGGAGCAGCGTAGGTCTCGGAAGAATGTTCCGGCAACATTATTTTCTGTT
ATAGTTGCATTCATTTTACCCCAACGGACAATTACCTGCCACTCTTCGAA
TGCTCTCTTTTTCCGTTGACATATCTCTAGGGAGTTGGACGAGAAGGAGG
CGGTACTTGATATGGACTCGTCTGAGGGCAAGGAAATGCTTCTCCGGGCT
GTCGAGAACGCCACGGACGCCTTGAAGGTCTTTCAGGGGAGATAGGTTCG
AACCACGGACGGACGCTGTTCTGCCCTTTTGATTTTTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig89336:1401..2190+

>mRNA_H-elongata_contig89336.16434.1 ID=mRNA_H-elongata_contig89336.16434.1|Name=mRNA_H-elongata_contig89336.16434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig89336:1401..2190+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCCGCATATCAGCGACCCTCTTGTGAAGGAAGACTGTCAGATGA
AGGCCGCATATCAGCGACCCTCTTGTGAAGGAAGACTGTCAGGGAGTTGG
ACGAGAAGGAGGCGGTACTTGATATGGACTCGTCTGAGGGCAAGGAAATG
CTTCTCCGGGCTGTCGAGAACGCCACGGACGCCTTGAGGAGTTGGACGAG
AAGGAGGCGGTACTTGATATGGACTCGTCTGAGGGCAAGGAAATGCTTCT
CCGGGCTGTCGAGAACGCCACGGACGCCTTGA
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