mRNA_H-elongata_contig89302.16431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89302.16431.1
Unique NamemRNA_H-elongata_contig89302.16431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A6H5KCL5_9PHAE (GMC_OxRdtase_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCL5_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 4.750e-102
Identity = 180/290 (62.07%), Postives = 216/290 (74.48%), Query Frame = 1
Query:    4 IYQVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRD----AGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPSLFSSAGLSAGAFLTSPYAPDPAIGNMSTPDIQV 861
            I +VAPFF++SCE AGI +TEDFNKPGGREGAGYY+FA++ GVRDSAARAMLGDI+MG+D RTNLDI+ GA V++VL E  + V T   ++ D   +       EG   + VP+A GVEF +DGKV++ +I        AGSA+VV AGAL TPK+LMTSGIGDKAEL  + + CIA+VP +GKNLQ DHASVGVMYMLGPD+LKLMPSAYTV QELERYK+ VLK  +  FP  +       DSD LTN E+N+PS+FSSAGLSAGAFL SPY   PA  N S PDIQ+
Sbjct:  188 IDEVAPFFVDSCEGAGIKLTEDFNKPGGREGAGYYHFAVRDGVRDSAARAMLGDIVMGRDVRTNLDIVTGAHVSKVLIEDAQPVPTESEDDDDTVASRL-----EGKGGRTVPAATGVEFVLDGKVEQVNIAAPGSHGRAGSAVVVTAGALLTPKLLMTSGIGDKAELEGHGLGCIANVPELGKNLQ-DHASVGVMYMLGPDILKLMPSAYTVAQELERYKMGVLKAFDLGFPPGV--TIGGVDSDDLTNGEQNAPSIFSSAGLSAGAFLKSPYESHPAGSNDSAPDIQL 469          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A835YLF3_9STRA (Choline dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.920e-46
Identity = 114/285 (40.00%), Postives = 149/285 (52.28%), Query Frame = 1
Query:   10 QVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSP-SLFSSAGLSAGAFLTSPYAPDPAIGNMSTPDIQV 861
            +VA FF+ESC   G+P+ +DFN+PG REGAG Y FAI+ GVRDSAARA+LG II GK  R NL IL  A V+++L E                  TT                                        IVV+ GAL TP++LM SGIGD   L+   + C+A VPGVG+NLQ DH  VG+M+  G  LL+  PSAY +  ELE+YK+ V++ +  DFP  +        +D       +SP  LF+S G +AGAFL S       + N + PDIQ+
Sbjct:  306 EVAAFFIESCAYLGLPVVDDFNRPGAREGAGLYTFAIREGVRDSAARALLGPIISGKVPRPNLTILSKAEVSQILLEAD----------------TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVVSGGALMTPRLLMASGIGDARALADAGVACVADVPGVGRNLQ-DHPGVGLMFTAGHTLLERYPSAYKLALELEKYKLNVMRALEIDFPPGVTMAGVIDAADQEGTPVWSSPFGLFASTGQTAGAFLCS------GLSNTTVPDIQL 567          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A4D9CPB5_9STRA (GMC_OxRdtase_N domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPB5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.470e-31
Identity = 92/219 (42.01%), Postives = 124/219 (56.62%), Query Frame = 1
Query:   10 QVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITK---RDAGSA-IVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYK 654
            QVAP+FLE+C   G+PI++DFN P GR GA YY+F IK+GVR SAARA LG I+   D R+NLDI+  A VT VL  G                      E++G     V +A GV FA +G   + +  K   R  G   +V+ AGA+HTPK+LM SG+G + +L    I  +  +PGVG+NLQ DH SV + + L   L   + +A +  +EL  YK
Sbjct:  271 QVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIM---DKRSNLDIVLKAEVTHVLMSG----------------------EKDG-----VYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQ-DHPSVPMTFTLTTPLAGRVAAAGSF-EELTEYK 457          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A5D6XSW6_9STRA (GMC_OxRdtase_N domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSW6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.000e-27
Identity = 93/274 (33.94%), Postives = 131/274 (47.81%), Query Frame = 1
Query:   25 FLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGK--DGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPS---LFSSAGLSAGAFLTSPYAPDPAI 831
            F+++CE  G+P T DFN PGGR GAG+Y+F  + GVR+SA R  LG ++ G+    R N  +L   LV++V+                               + D   A+GVE    G  ++ +I    +G  ++V AGA++TPK+LM SGIGD + L   KI    H+P VG NLQ DH  +GV +        L P A+ +  ELE+Y                              ++EN+PS   L  SAG+SAGAFL  P +  P I
Sbjct:  238 FVQACEAVGLPRTADFNAPGGRFGAGFYHFNTRDGVRESAVRTFLGPLLQGQKQSQRANFRVLLNTLVSKVV-------------------------------IGDAARAVGVEIVQAGGQRE-TIRLSKSGQ-VIVTAGAINTPKVLMMSGIGDASMLEGLKIPVKKHLPRVGMNLQ-DHPVLGVTFE------SLKPLAFDLQSELEQYF-------------------------QARTRKENNPSSYGLLGSAGISAGAFLIPPGSTVPEI 446          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: K3X1U6_GLOUD (GMC_OxRdtase_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1U6_GLOUD)

HSP 1 Score: 110 bits (276), Expect = 1.060e-23
Identity = 93/278 (33.45%), Postives = 129/278 (46.40%), Query Frame = 1
Query:   10 QVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGK--DGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVE-FAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERY-KIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPSLFSSAGLSAGAFLTSPYAPDPAI 831
            +++  F+++CE+ G+P + DFN P GR GAGYY+F  + GVR+SAAR  LG ++ G+    R N  +L   +V +V                                V D   A GVE +  DG  +   ++K+     ++V AGA++TPK+LM SGIGDK  L   KI    H+  VG NLQ DH  +GV +     L      +  V  ELERY + K  KE N                         S  +  SAG+SAGAFL  P +  P I
Sbjct:  250 ELSEQFVQACEQIGLPRSVDFNAPSGRFGAGYYHFNTRDGVRESAARTFLGPLLQGQAQSQRANFRMLLNTMVLKV-------------------------------NVNDALEAQGVEIYHSDGTRESIGLSKK---GQVIVTAGAINTPKVLMMSGIGDKGVLQRLKIPVKKHLSRVGMNLQ-DHPVLGVTFESVNSL------SIDVESELERYFRAKQAKESNV-----------------------TSFGVMGSAGISAGAFLIPPGSTIPEI 463          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A6A3DYS6_9STRA (GMC_OxRdtase_N domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DYS6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.120e-23
Identity = 89/274 (32.48%), Postives = 125/274 (45.62%), Query Frame = 1
Query:   25 FLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGKDG---RTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPS--LFSSAGLSAGAFLTSPYAPDPAI 831
            F+E+CE+ GIP T DFN PGGR GAGYY+F I+ GVR+SAA+A LG ++  K G   ++N  ++    VTR+               R+ T                      +  A  G+V              +V AGA++TPK+LM SGIG++  L    +    H+P VG NLQ DH  VG+ +         +P A  +  EL+ Y                         +  ++K  N+ S  LF SAG+SAGAFL  P +  P I
Sbjct:  230 FIEACEQLGIPRTTDFNAPGGRYGAGYYHFNIRDGVRESAAKAFLGPMLDSKTGESTKSNFRLMLDTTVTRIRINDNNVTEGVEVRFRNGTEQL-------------------IRLAEHGEV--------------IVTAGAINTPKVLMLSGIGNRDALRKVGLPLKKHLPRVGMNLQ-DHPVVGMTFECE------LPRAVDLKSELDSYL------------------------NAASSKHTNASSFGLFGSAGISAGAFLIPPGSTLPEI 439          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: M4BBH5_HYAAE (GMC_OxRdtase_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBH5_HYAAE)

HSP 1 Score: 107 bits (268), Expect = 1.260e-22
Identity = 86/275 (31.27%), Postives = 125/275 (45.45%), Query Frame = 1
Query:   25 FLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDII---MGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPS---LFSSAGLSAGAFLTSPYAPDPAI 831
            F+E+C +AGIP T DFN PGGR GAGYY+F  + G+R+SAA+  LG ++     +  R+N  ++   +VT++                                 Q+V   + V +A +G  +   + +      ++V AGA++TPK+LM SGIGD   L    +    H+P VG NLQ DH  VG+ +   P           +  EL+ Y +                          TN  + + S   LF SAGLSAGAFLT P +  P I
Sbjct:  219 FIEACVQAGIPRTMDFNAPGGRHGAGYYHFNTRDGIRESAAKTFLGPMLDNNTAESTRSNFRLMLDTMVTKININE-----------------------------QNVAEGVEVRYA-NGTAEVIRLAEL---GEVIVTAGAINTPKILMLSGIGDYVTLEKAGLPTKKHLPWVGMNLQ-DHPVVGMSFKYDPK------EEVDLEAELDAYFM-------------------------ATNARDTTASSYGLFGSAGLSAGAFLTPPGSTVPEI 428          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A2D4CBF4_PYTIN (GMC_OxRdtase_N domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBF4_PYTIN)

HSP 1 Score: 107 bits (268), Expect = 1.630e-22
Identity = 87/269 (32.34%), Postives = 125/269 (46.47%), Query Frame = 1
Query:   25 FLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDIIMGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPSLFSSAGLSAGAFLTSPYAPDPAI 831
            F+E+ E  GIP T+DFN P GR G G+Y+F  + GVR+SAAR  +G ++  K+GR+N  +L    VTR+ F+        RGE                       +A GVE       ++  + +  A   ++V AGA++TPK+LM SG+G K +L    +  I H+P VG NLQ DH  V V +   P+     P    +  EL  Y     ++                      +K   S  +  SAG+SAGAFL  P +  P I
Sbjct:  145 FVEASEEIGIPRTDDFNAPHGRHGVGFYHFNTRDGVRESAARRFVGPML--KEGRSNFHLLLNTEVTRIQFD-------ERGE-----------------------TATGVEVVHSDGTRQ--LIRVSAQGNVIVTAGAVNTPKVLMQSGVGHKDDLKQLGLPVIKHLPRVGMNLQ-DHPVVAVAFE-NPN-----PVPVDLNSELATYFAATTRQ----------------------DKNATSYGMMGSAGISAGAFLVPPGSTLPEI 350          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: G5AA76_PHYSP (GMC_OxRdtase_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AA76_PHYSP)

HSP 1 Score: 107 bits (266), Expect = 2.450e-22
Identity = 86/274 (31.39%), Postives = 124/274 (45.26%), Query Frame = 1
Query:   25 FLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDII---MGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPS--LFSSAGLSAGAFLTSPYAPDPAI 831
            F+E+CE  GIP T DFN PGGR GAGYY+F  + GVR+SAA+A LG ++    GK  ++N  ++    VTR+                                   V   + V ++ +G  +   + K      ++V AGA++TPK+LM SG+G++  L    +    H+P VG NLQ DH  +G+ +         +P A  +  EL+ Y     K  N                     K  N+ S  LF SAG+S GAFL  P +  P I
Sbjct:  247 FIEACEELGIPRTADFNAPGGRYGAGYYHFNTRDGVRESAAKAFLGPMLDTKTGKSTKSNFRLMLDTTVTRIRINDNN-----------------------------VTEGVEVRYS-NGTAQLIRLAKH---GEVIVTAGAINTPKILMLSGLGNRDTLEKVDLPVKKHLPRVGMNLQ-DHPVIGMTFECE------LPRAVDLKAELDSY----FKATN--------------------TKHTNASSFGLFGSAGISVGAFLIPPGSTIPEI 456          
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Match: A0A2P4YUG4_9STRA (Choline dehydrogenase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YUG4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.020e-22
Identity = 89/279 (31.90%), Postives = 130/279 (46.59%), Query Frame = 1
Query:   10 QVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAARAMLGDII---MGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTTDLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHTPKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDLLKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEENSPS--LFSSAGLSAGAFLTSPYAPDPAI 831
             ++  F+E+C   GIP TEDFN P GR GAGYY+F  + GVR+SAA+A LG I+     +  R+N  ++    VT++                             G   ++V   + V +  +G V+   + +      ++V AGA++TPK+LM SG+G++  L    +    H+P VG NLQ DH  VG+++                  E E  +I  LK            +D DS     + K  N+ S  LF SAGLSAGAFL  P +  P I
Sbjct:  187 DISAEFIEACAELGIPRTEDFNAPDGRYGAGYYHFNTRDGVRESAAKAFLGPILDSDTAQSTRSNFRLMLDTTVTKI-----------------------------GINDENVTEGVEVRYG-NGTVQLIRLAEH---GEVIVTAGAINTPKILMLSGLGNRDTLKKAGLPLTKHLPRVGMNLQ-DHPVVGMIF------------------ECEAPRIVDLK------------MDLDSYFKATSTKHANASSFGLFGSAGLSAGAFLIPPGSTIPEI 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89302.16431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCL5_9PHAE4.750e-10262.07GMC_OxRdtase_N domain-containing protein n=2 Tax=E... [more]
A0A835YLF3_9STRA6.920e-4640.00Choline dehydrogenase n=1 Tax=Tribonema minus TaxI... [more]
A0A4D9CPB5_9STRA2.470e-3142.01GMC_OxRdtase_N domain-containing protein n=4 Tax=M... [more]
A0A5D6XSW6_9STRA2.000e-2733.94GMC_OxRdtase_N domain-containing protein (Fragment... [more]
K3X1U6_GLOUD1.060e-2333.45GMC_OxRdtase_N domain-containing protein n=1 Tax=G... [more]
A0A6A3DYS6_9STRA1.120e-2332.48GMC_OxRdtase_N domain-containing protein n=3 Tax=P... [more]
M4BBH5_HYAAE1.260e-2231.27GMC_OxRdtase_N domain-containing protein n=1 Tax=H... [more]
A0A2D4CBF4_PYTIN1.630e-2232.34GMC_OxRdtase_N domain-containing protein (Fragment... [more]
G5AA76_PHYSP2.450e-2231.39GMC_OxRdtase_N domain-containing protein n=1 Tax=P... [more]
A0A2P4YUG4_9STRA3.020e-2231.90Choline dehydrogenase n=1 Tax=Phytophthora palmivo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89302contigH-elongata_contig89302:91..2332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.3
Seed ortholog evalue4.6e-88
Seed eggNOG ortholog2880.D7G8F7
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size861
Cds size861
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89302.16431.1prot_H-elongata_contig89302.16431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89302 91..2332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.5772707-CDS-H-elongata_contig89302:90..3601622931293.5772707-CDS-H-elongata_contig89302:90..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 91..360 +
1691679776.9844146-CDS-H-elongata_contig89302:90..3601691679776.9844146-CDS-H-elongata_contig89302:90..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 91..360 +
1622931293.5955834-CDS-H-elongata_contig89302:598..7841622931293.5955834-CDS-H-elongata_contig89302:598..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 599..784 +
1691679776.9943922-CDS-H-elongata_contig89302:598..7841691679776.9943922-CDS-H-elongata_contig89302:598..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 599..784 +
1622931293.6169372-CDS-H-elongata_contig89302:1197..12931622931293.6169372-CDS-H-elongata_contig89302:1197..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 1198..1293 +
1691679777.0034926-CDS-H-elongata_contig89302:1197..12931691679777.0034926-CDS-H-elongata_contig89302:1197..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 1198..1293 +
1622931293.6563816-CDS-H-elongata_contig89302:1513..16301622931293.6563816-CDS-H-elongata_contig89302:1513..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 1514..1630 +
1691679777.0133111-CDS-H-elongata_contig89302:1513..16301691679777.0133111-CDS-H-elongata_contig89302:1513..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 1514..1630 +
1622931293.6810534-CDS-H-elongata_contig89302:2140..23321622931293.6810534-CDS-H-elongata_contig89302:2140..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 2141..2332 +
1691679777.0234346-CDS-H-elongata_contig89302:2140..23321691679777.0234346-CDS-H-elongata_contig89302:2140..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89302 2141..2332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89302.16431.1

>prot_H-elongata_contig89302.16431.1 ID=prot_H-elongata_contig89302.16431.1|Name=mRNA_H-elongata_contig89302.16431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
IIYQVAPFFLESCERAGIPITEDFNKPGGREGAGYYNFAIKSGVRDSAAR
AMLGDIIMGKDGRTNLDILHGALVTRVLFEGGRKVRTYRGENRDPTTTTT
DLEEEEGSMVQDVPSAIGVEFAVDGKVKKASITKRDAGSAIVVAAGALHT
PKMLMTSGIGDKAELSSNKIDCIAHVPGVGKNLQQDHASVGVMYMLGPDL
LKLMPSAYTVVQELERYKIKVLKEINFDFPMAMKEIDEDSDSDPLTNKEE
NSPSLFSSAGLSAGAFLTSPYAPDPAIGNMSTPDIQV
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mRNA from alignment at H-elongata_contig89302:91..2332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89302.16431.1 ID=mRNA_H-elongata_contig89302.16431.1|Name=mRNA_H-elongata_contig89302.16431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2242bp|location=Sequence derived from alignment at H-elongata_contig89302:91..2332+ (Himanthalia elongata Himel1 dioecious)
ATAATATATCAGGTTGCTCCATTTTTCCTGGAGAGTTGTGAACGAGCCGG TATCCCCATCACCGAAGACTTTAACAAGCCGGGAGGAAGAGAAGGAGCGG GGTACTACAACTTCGCCATCAAGAGCGGTGTTCGCGACAGCGCGGCCCGC GCCATGTTGGGCGATATAATCATGGGAAAGGACGGGCGCACGAACCTGGA CATCCTTCATGGAGCGCTTGTCACCAGGGTCTTGTTCGAGGGTGGCCGGA AAGTGAGGACTTACCGGGGGGTTTTGCAGACACCTGGTCCCCGTTCCCTC CTTATTTCAACCCTCCATAATGCTCGATGTTTTCTGCTCCGTGTTACTAC ATCGGCCTTAAGTCTGCCCTCAACTCGGTATTCGCTTGCGTCTGTGCGCC ACCGCGGCAGTTCGTGACACGTGACATTGACTCTTGTATGTATGTTACGT GTCCACGCCCGCATCCTACCCACCCCGCACGCTCAAGCGACAGACTTTGG GCGGAGAGGAGAACCGCGATCCGACGACGACGACGACGGATCTTGAGGAA GAAGAAGGAAGCATGGTTCAAGATGTTCCATCCGCGATTGGTGTAGAGTT CGCAGTAGACGGAAAGGTTAAGAAAGCGAGCATTACGAAGCGGGACGCGG GATCGGCTATCGTCGTGGCTGCGGGGGCGCTCCACACACCGAAGGTGTGA AACAAAAATATTCGATTGTTAACGGGAGGGAATCTCGTGCATCTAGGGCG TCAAAACTGCGTGCCTGCAGCGGCTGACATTCGCGAAAAGGGGTGTTTTG GACATATCCAGAGGTCGTCGCAGGGATCGTCTTCGCTCAGCGGAGGTATT GCGGTGTCGTGAAGTGTGGGCGGTATCTGGATTAAGAGGACTGTTGCTGG AAACCTTTGAGAGTATTTAAAATATTTTCATGCCGAAGGGGTGTGTTGAC GTCTTGTCCCGGATGCGGATGGGATCCATCAAACTTGAGTATCCTCCCGC TATTTCGCTCAAGAGAACCTAGATCACTTGTTGCATCAATCTAATCCCCT TGGATCTGTTTGCAAATCAGAACGCCGACGCGTGCGTTCGCTGTCGCCGC GTGACAGATGCTGATGACGTCGGGGATAGGAGACAAGGCCGAGCTTTCTT CGAACAAAATCGATTGCATTGCACACGTCCCTGGTGTGGGGAAAAACTTA CAGGTGTGGGTGGTAAGCGTTTTACAAATCATATCGCCGGGGTTTCGTTG GGCGGACGCCCCAAAGCCCTCACTAACCGTGCCGTGGAATATGGGATATA TCTTGGTTCACCTGGGGTGTGACTCTATGAAACACGAGAGGGAAAGTGAT CAGGTTGAGGTCGGGGGTGAGCACGCCTCGACTATGGAACTCCCCCCTCA AGACTTCCCCCCCCCCCATCAAGCAGGACCATGCAAGCGTCGGTGTGATG TACATGCTTGGCCCTGACCTGCTAAAGCTTATGCCATCAGCCTACACTGT GGTTCAGGAACTGGAGAGATACAAAATTAAGGTGCTCAAGGTGAGTGAGG AGGCCAACGAGCGTCTCGTTGTGGAAGTCCTCAATTCCTGATACTTATCC ACGGGGGGGCGGATTTCTCGTCGTTCGTGCTACACCCCTTCGCCTTTTCG AGAGAGTTACGCACCTCTGTTTCCGTCCGAATCACGCGAGTGTGACATAT CGATGCACCTACGAACGGCCAAGCATTGACTTGCACTACGAAGTAAGCGT TTTTGTTTGTTGTAGACAGATCTTGTTGACTACCGCATCAGCAGCTACAT CTCCGCCGTACAAACCCTGGGCTTGAACCTTAGCTATGCGCGATGCCCAT TGTTTGCCGCCACCGATCGAAGGGATCGCTCTCAGGATCCAATATCTCGC ATATCGTGCTCGATTCGAACTGACCATGCATTTCGAGAAGCGCAGCAGGC CTATGACGGCCCACCCCGTCTCCTTACAAATACGGTCTACGATACGTTCT TCTGCTACTCTTGCCAGGCGTTCGGTCTTGACTACCCTCAGGGCTTAAAG GAAATCAATTTTGACTTCCCTATGGCTATGAAGGAAATCGACGAAGACTC CGATTCTGACCCCCTCACGAACAAGGAGGAAAATTCTCCATCGCTGTTCA GCTCCGCCGGTCTCAGCGCAGGAGCGTTTCTCACCTCTCCCTATGCGCCG GATCCTGCCATCGGAAACATGTCGACACCAGATATTCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig89302:91..2332+

>mRNA_H-elongata_contig89302.16431.1 ID=mRNA_H-elongata_contig89302.16431.1|Name=mRNA_H-elongata_contig89302.16431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig89302:91..2332+ (Himanthalia elongata Himel1 dioecious)
ATAATATATCAGGTTGCTCCATTTTTCCTGGAGAGTTGTGAACGAGCCGG
TATCCCCATCACCGAAGACTTTAACAAGCCGGGAGGAAGAGAAGGAGCGG
GGTACTACAACTTCGCCATCAAGAGCGGTGTTCGCGACAGCGCGGCCCGC
GCCATGTTGGGCGATATAATCATGGGAAAGGACGGGCGCACGAACCTGGA
CATCCTTCATGGAGCGCTTGTCACCAGGGTCTTGTTCGAGGGTGGCCGGA
AAGTGAGGACTTACCGGGGGATAATATATCAGGTTGCTCCATTTTTCCTG
GAGAGTTGTGAACGAGCCGGTATCCCCATCACCGAAGACTTTAACAAGCC
GGGAGGAAGAGAAGGAGCGGGGTACTACAACTTCGCCATCAAGAGCGGTG
TTCGCGACAGCGCGGCCCGCGCCATGTTGGGCGATATAATCATGGGAAAG
GACGGGCGCACGAACCTGGACATCCTTCATGGAGCGCTTGTCACCAGGGT
CTTGTTCGAGGGTGGCCGGAAAGTGAGGACTTACCGGGGGGAGAACCGCG
ATCCGACGACGACGACGACGGATCTTGAGGAAGAAGAAGGAAGCATGGTT
CAAGATGTTCCATCCGCGATTGGTGTAGAGTTCGCAGTAGACGGAAAGGT
TAAGAAAGCGAGCATTACGAAGCGGGACGCGGGATCGGCTATCGTCGTGG
CTGCGGGGGCGCTCCACACACCGAAGGAGAACCGCGATCCGACGACGACG
ACGACGGATCTTGAGGAAGAAGAAGGAAGCATGGTTCAAGATGTTCCATC
CGCGATTGGTGTAGAGTTCGCAGTAGACGGAAAGGTTAAGAAAGCGAGCA
TTACGAAGCGGGACGCGGGATCGGCTATCGTCGTGGCTGCGGGGGCGCTC
CACACACCGAAGATGCTGATGACGTCGGGGATAGGAGACAAGGCCGAGCT
TTCTTCGAACAAAATCGATTGCATTGCACACGTCCCTGGTGTGGGGAAAA
ACTTACAGATGCTGATGACGTCGGGGATAGGAGACAAGGCCGAGCTTTCT
TCGAACAAAATCGATTGCATTGCACACGTCCCTGGTGTGGGGAAAAACTT
ACAGCAGGACCATGCAAGCGTCGGTGTGATGTACATGCTTGGCCCTGACC
TGCTAAAGCTTATGCCATCAGCCTACACTGTGGTTCAGGAACTGGAGAGA
TACAAAATTAAGGTGCTCAAGCAGGACCATGCAAGCGTCGGTGTGATGTA
CATGCTTGGCCCTGACCTGCTAAAGCTTATGCCATCAGCCTACACTGTGG
TTCAGGAACTGGAGAGATACAAAATTAAGGTGCTCAAGGAAATCAATTTT
GACTTCCCTATGGCTATGAAGGAAATCGACGAAGACTCCGATTCTGACCC
CCTCACGAACAAGGAGGAAAATTCTCCATCGCTGTTCAGCTCCGCCGGTC
TCAGCGCAGGAGCGTTTCTCACCTCTCCCTATGCGCCGGATCCTGCCATC
GGAAACATGTCGACACCAGATATTCAGGTGGAAATCAATTTTGACTTCCC
TATGGCTATGAAGGAAATCGACGAAGACTCCGATTCTGACCCCCTCACGA
ACAAGGAGGAAAATTCTCCATCGCTGTTCAGCTCCGCCGGTCTCAGCGCA
GGAGCGTTTCTCACCTCTCCCTATGCGCCGGATCCTGCCATCGGAAACAT
GTCGACACCAGATATTCAGGTG
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