mRNA_H-elongata_contig8929.16429.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8929.16429.1
Unique NamemRNA_H-elongata_contig8929.16429.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.950e-57
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    4 ALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES 285
            ALIKRVIAV GD V+IKDGSL VNG+EQFE YTFEEPEY+WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLP ENVIGRAIFKYWPPWRAG +E+
Sbjct:  118 ALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 211
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.530e-56
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    4 ALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES 285
            ALIKRVIAV GD+V+IKDGSL VNG+EQFE YTFEEPEY+WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLP ENVIGRAIFKYWPPWRAG +E+
Sbjct:  191 ALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 284
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.710e-47
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES 285
            +ALIKR++AV+GD+V+I+ G + +NG+ Q E +  ++PEY WGP  VP G VMVLGDNRNHSLDSHIWGFLPRENVIGRA+FKYWPPWRAG VE 
Sbjct:   57 EALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVEG 151
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: K8YRM0_NANGC (Mitochondrial inner membrane protease subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRM0_NANGC)

HSP 1 Score: 152 bits (385), Expect = 6.390e-44
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES 285
            +ALIKR+IA  GD VE+KDG L VNG  Q E+Y  E P Y WGP+ VP+GM MVLGDNRNHSLDSHIWGFLP+EN+IGRAI KYWPPWR GLVE 
Sbjct:  195 EALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGLVEG 289
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 151 bits (382), Expect = 1.020e-43
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGS-LIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLV 279
            +ALIKRV+AV GD VEIKDG  L +NGE+Q E+YT E+  Y WGPQTVP+G V+VLGDNRNHSLD H+WGFLP EN+IGRA+FKYWPPWRAG +
Sbjct:  175 EALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGI 268
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.630e-41
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDG-SLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES 285
            +ALIKRV+AV GD VE+KDG +L VNG  Q E +T E+  Y+WGP+ VP GM+MVLGDNRNHSLDSH+WGFLP+ENVIGRA+FKYWP WR GL+E+
Sbjct:  166 EALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIET 261
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A448Z2B4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2B4_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.330e-41
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAG 273
            +ALIKR++A++GD VE+K G L VNG+EQ E +T E+ EY +GP  VP G V+VLGDNRNHSLD HIWGFLP+ENVIGRA+F YWPPWR G
Sbjct:  108 EALIKRIVAIEGDEVEVKMGKLYVNGDEQDEPFTAEDAEYEFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRVG 198
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BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A7S1E4I6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4I6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.280e-40
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAG 273
            +ALIKR++A++GD V+I++G L +NGE Q E +T E+  Y +GP TVP G V+VLGDNRNHSLD HIWGFLP+ENVIGRA+F YWPPWR G
Sbjct:   90 EALIKRIVAIEGDVVKIREGKLYINGEPQDEPFTAEDAAYEFGPVTVPPGQVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRLG 180
[Close]
BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.600e-40
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAG 273
            +ALIKR++A++GD VE+K G L +NG+ Q E YT E+ EY +GP  VPEG V+VLGDNRNHSLD HIWGFLP+ENVIGRA+F YWPPWR G
Sbjct:  213 EALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303
[Close]
BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS)

HSP 1 Score: 138 bits (348), Expect = 1.270e-39
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAG 273
            +ALIKR++A +GD VE+  G L VNG EQ E +T E+ EY++GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRA+F YWPPWR G
Sbjct:   89 EALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCG 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8929.16429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUG3_9PHAE4.950e-5788.30Mitochondrial inner membrane protease subunit n=1 ... [more]
D8LS42_ECTSI1.530e-5688.30Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA9.710e-4769.47Mitochondrial inner membrane protease subunit n=1 ... [more]
K8YRM0_NANGC6.390e-4472.63Mitochondrial inner membrane protease subunit n=3 ... [more]
A0A6T5N089_HETAK1.020e-4372.34Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA1.630e-4169.79Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A448Z2B4_9STRA3.330e-4168.13Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S1E4I6_9STRA2.280e-4065.93Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7R9WYP6_9STRA2.600e-4068.13Mitochondrial inner membrane protease subunit n=1 ... [more]
B8BZJ0_THAPS1.270e-3967.03Mitochondrial inner membrane protease subunit (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8929contigH-elongata_contig8929:6389..7458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue6.1e-45
Seed eggNOG ortholog2880.D8LS42
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSignal peptidase I (SPase I) (Leader peptidase I)
Ec32 orthologEc-12_004880.1
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.4429767-CDS-H-elongata_contig8929:6388..65681622931293.4429767-CDS-H-elongata_contig8929:6388..6568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8929 6389..6568 -
1691679776.93158-CDS-H-elongata_contig8929:6388..65681691679776.93158-CDS-H-elongata_contig8929:6388..6568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8929 6389..6568 -
1622931293.463159-CDS-H-elongata_contig8929:7350..74581622931293.463159-CDS-H-elongata_contig8929:7350..7458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8929 7351..7458 -
1691679776.9444509-CDS-H-elongata_contig8929:7350..74581691679776.9444509-CDS-H-elongata_contig8929:7350..7458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8929 7351..7458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8929.16429.1prot_H-elongata_contig8929.16429.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8929 6389..7458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8929.16429.1

>prot_H-elongata_contig8929.16429.1 ID=prot_H-elongata_contig8929.16429.1|Name=mRNA_H-elongata_contig8929.16429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QALIKRVIAVDGDSVEIKDGSLIVNGEEQFEQYTFEEPEYNWGPQTVPEG
MVMVLGDNRNHSLDSHIWGFLPRENVIGRAIFKYWPPWRAGLVES*
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mRNA from alignment at H-elongata_contig8929:6389..7458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8929.16429.1 ID=mRNA_H-elongata_contig8929.16429.1|Name=mRNA_H-elongata_contig8929.16429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1070bp|location=Sequence derived from alignment at H-elongata_contig8929:6389..7458- (Himanthalia elongata Himel1 dioecious)
CAGGCTCTAATCAAACGTGTCATCGCTGTAGATGGCGACAGCGTGGAGAT
CAAGGACGGGTCGCTAATTGTAAATGGGGAAGAACAGTTCGAGCAGTACA
CCTTCGAGGTACGTGGCCACAAAAAGCGTCGGCTGCGGCGGGTAGCGCGG
GGACGCTCTCTCTTCGCAGGATCACAACACCTCCGATATTCTCTGTGACA
GTCAGTCACTGTATCGCACATGCCCACTCTACCAATCGTGAGTGTGGGGA
AAAAAAGGCGTACAATAATTGGTCCATGGGGTTTTCTGAATAAGATAGCT
TGAGGATTGCTGCCTCAGTGCCAGTTGACTCTCGGTAGTAAACGCCATCG
GTACACAATTGCGTGACTTAATGAAATCGGGATTGACCCGATGGCGGTTG
ACGGTAGAGATGAACGCCATCGCGGAAAACGAGAGAATCGCGGGAGTACG
CACTGGAGTCGGCCTGTGTTGAGATAATGAGCAGGCTGACTCGGGACGGG
ACTGCCGAACCCATCTCGCGAGACCAAATTGTCAGGCGGGAACAGTGAAA
AGGGACAAATTAATTTTCCCTGTTGAGCGGACCACAAACATGACGTAACC
AAATCCGGTTGATCTTTCTCTGCTATCTATATATGATGACCACACACCAT
TTGCGTCCCTTTGAAACTTACCGCATGCAGTCGGACGGAAAAACTTGAGT
TATGTTGGGGTGCGCTACTACTATGTATATAGGATATAGGGTGTAATCCG
ATAAACCAACAAAGGCAGTCGAAAGTACTGCGGTGTGTGGAGGCATTTAG
CCACCCGTGAGCATAATTTGTTTCAGACCCTTAACACTATTATCGACGAT
TGTCGACGACTTTGATGCGTTCGAACCTTTCTGTCGGCAGGAACCTGAGT
ACAATTGGGGCCCGCAGACAGTTCCCGAGGGCATGGTGATGGTCTTGGGT
GACAATCGTAACCACAGCCTGGACTCGCACATCTGGGGGTTCCTCCCTAG
GGAAAACGTAATCGGTAGGGCGATCTTCAAATACTGGCCGCCTTGGCGAG
CGGGGCTTGTGGAGAGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig8929:6389..7458-

>mRNA_H-elongata_contig8929.16429.1 ID=mRNA_H-elongata_contig8929.16429.1|Name=mRNA_H-elongata_contig8929.16429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig8929:6389..7458- (Himanthalia elongata Himel1 dioecious)
CAGGCTCTAATCAAACGTGTCATCGCTGTAGATGGCGACAGCGTGGAGAT
CAAGGACGGGTCGCTAATTGTAAATGGGGAAGAACAGTTCGAGCAGTACA
CCTTCGAGCAGGCTCTAATCAAACGTGTCATCGCTGTAGATGGCGACAGC
GTGGAGATCAAGGACGGGTCGCTAATTGTAAATGGGGAAGAACAGTTCGA
GCAGTACACCTTCGAGGAACCTGAGTACAATTGGGGCCCGCAGACAGTTC
CCGAGGGCATGGTGATGGTCTTGGGTGACAATCGTAACCACAGCCTGGAC
TCGCACATCTGGGGGTTCCTCCCTAGGGAAAACGTAATCGGTAGGGCGAT
CTTCAAATACTGGCCGCCTTGGCGAGCGGGGCTTGTGGAGAGCTAGGAAC
CTGAGTACAATTGGGGCCCGCAGACAGTTCCCGAGGGCATGGTGATGGTC
TTGGGTGACAATCGTAACCACAGCCTGGACTCGCACATCTGGGGGTTCCT
CCCTAGGGAAAACGTAATCGGTAGGGCGATCTTCAAATACTGGCCGCCTT
GGCGAGCGGGGCTTGTGGAGAGCTAG
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