mRNA_H-elongata_contig89171.16420.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 2.650e-37 Identity = 93/236 (39.41%), Postives = 132/236 (55.93%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FLKHK+DA A R + +G+ + ++R+D GG++ G +F S ++L IK+E TP ++PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ SPYE+WYG RP PF Y R +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 727 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASV-RADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 956
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 2.670e-37 Identity = 93/236 (39.41%), Postives = 132/236 (55.93%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FLKHK+DA A R + +G+ + ++R+D GG++ G +F S ++L IK+E TP ++PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ SPYE+WYG RP PF Y R +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASV-RADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 663
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 148 bits (374), Expect = 2.720e-37 Identity = 91/236 (38.56%), Postives = 133/236 (56.36%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G +S+GG + M+ DDFTR + FL++K+DA +A R + +G+ + +R+D GG++ G +F S ++L IK+E TP H+PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ SPYE+WYG RP PF Y + +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 331 VFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASV-RADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLFPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 560
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.280e-36 Identity = 91/236 (38.56%), Postives = 133/236 (56.36%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FL+ K+DA +A R + + +G+ I ++R+D GG++ G +F S ++L IK+E TP H+P+++GV +R LGL+ + ++ L + K+DRLWAEAM +AC+ N S+ SPYE+WYG RP PF Y + +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANV-RADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRNVTW 707
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 139 bits (350), Expect = 5.240e-36 Identity = 84/219 (38.36%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRV 624
+F DL G S+GG + ++ DDFTR + FL++K+DA +A R + G+ + ++R+D GGK+ G F S ++L IK+E TP ++PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ SPYE+WYG RP PF Y R +P KL P+GESC +G D PRD RV
Sbjct: 95 VFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.010e-35 Identity = 92/236 (38.98%), Postives = 131/236 (55.51%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTD-GGGKWHGQFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FL+ K+DA +A R + +G+ I ++R+D GGG + G+F S ++L IK+E TP H+P+++GV +R LGL + ++ L + K+DRLWAEAM +AC+ N S+ SPYE+WYG RP PF Y + +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 128 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSF-HANVRADGIPSLIEIVRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRNVTW 357
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.060e-35 Identity = 91/236 (38.56%), Postives = 132/236 (55.93%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FL++K+DA +A R + G+ + ++R+D GG++ G +F S ++L IK+E TP ++PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ SPYE+WYG RP PF Y R +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 477
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.080e-35 Identity = 90/236 (38.14%), Postives = 133/236 (56.36%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F++L G S+GG + M+ DDFTR + FL+ K+DA +A R + + +G+ I ++R+D GG++ G +F S ++L IK+E TP H+P+++GV +R LGL+ + ++ L + K+DRLWAEAM +AC+ N S+ SPYE+WYG RP PF Y + +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 454 VFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANV-RADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRNVTW 683
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.480e-35 Identity = 90/236 (38.14%), Postives = 131/236 (55.51%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FL++K+DA +A R + G+ + ++R+D GG++ G +F S ++L IK+E TP ++PQY+GV +R LGL+ + ++ L + K+D+LWAEAM +AC+ N S+ PYE+WYG RP PF Y R +P KL P+GESC +G D PRD RV LT G I + VTW
Sbjct: 193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 422
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 142 bits (358), Expect = 3.380e-35 Identity = 89/235 (37.87%), Postives = 129/235 (54.89%), Query Frame = 1
Query: 1 LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIINDYFEPEGLK--IGVIRTDGGGKWHG-QFLSFLSKLGIKRESTPQHTPQYSGVVKRALGLLRDKTVS-------LLRGIMEGKSDRLWAEAMVYACDMWNQCTSSSLDIGTSPYELWYGRRPTFDSIPPFGTVGYLRRSKPGHKLAPRGESCIMLGLPPDCPRDNFRVRDLT-TGQILNRQAVTW 672
+F+DL G S+GG + M+ DDFTR + FLK K+DA +A R + +G+ + ++R+D GG++ G +F S ++L IK+E TP ++PQY+GV +R LGL+ ++ L + K+DRLWAEAM +AC+ N S+ SPYE+W+G P F Y R +P KL P+GE+C +G D PRD RV LT G I + VTW
Sbjct: 633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASV-RADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV--LTRVGTIQETRNVTW 862 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89171.16420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89171.16420.1 >prot_H-elongata_contig89171.16420.1 ID=prot_H-elongata_contig89171.16420.1|Name=mRNA_H-elongata_contig89171.16420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp LFIDLSGPFHEMSLGGNIFVMMCIDDFTRFKMVRFLKHKNDATNALRDIIback to top mRNA from alignment at H-elongata_contig89171:646..1341- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89171.16420.1 ID=mRNA_H-elongata_contig89171.16420.1|Name=mRNA_H-elongata_contig89171.16420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig89171:646..1341- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89171:646..1341- >mRNA_H-elongata_contig89171.16420.1 ID=mRNA_H-elongata_contig89171.16420.1|Name=mRNA_H-elongata_contig89171.16420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig89171:646..1341- (Himanthalia elongata Himel1 dioecious)back to top |