mRNA_H-elongata_contig89145.16417.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89145.16417.1
Unique NamemRNA_H-elongata_contig89145.16417.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: UPI001F09FFB2 (ankyrin repeat domain-containing protein n=3 Tax=Ralstonia solanacearum TaxID=305 RepID=UPI001F09FFB2)

HSP 1 Score: 58.5 bits (140), Expect = 1.020e-7
Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKD----------GTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
            AA  G +N   +LL+KG   +  +  G   L A    G A+   +LL++G   P    K P+ +  + +    A  + L+  L+D          G TAL  A+  G+ E+V +LLA  A++DQ+N  G TAL  A
Sbjct:   91 AASSGNLNAMRVLLDKGAQRDKPTGSGETPLEAAVLNGQASAACMLLQRGARLPPPAQK-PYLLPAAALTEDFASAVTLVAILRDHDFDPNARMNGDTALHIATELGNVELVRLLLARGASIDQKNSRGETALSIA 225          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: K0RBF4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RBF4_THAOC)

HSP 1 Score: 57.4 bits (137), Expect = 4.830e-7
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVD---------VEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDK 177
            AAHRGM+N+ E LLEK            V+  S++G   L+A ASEGH  +++ LL+ GKA+ NA DK
Sbjct:  708 AAHRGMLNVTEALLEKHASSPKAGEEGWVDNASDEGVTPLLASASEGHLAILQKLLDTGKADVNAIDK 775          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A2G5DP32_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DP32_AQUCA)

HSP 1 Score: 55.8 bits (133), Expect = 1.500e-6
Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEK-GVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDK---------------LPFAVDVSLICLSSA------GCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVD 339
            AAH+G  NIC+  +E    +V+    +G   L   +SEGH   +  L+EKG A+P A D+               L F+   S+ C S +        L  L+ +  G T L  +++RGH E+V +LL+   +V+
Sbjct:   54 AAHKGWTNICKYFIEDLNFNVDEKDTEGKTPLFGASSEGHLRTILYLIEKG-ADPAALDQYKTNALHCAASKGLYLSFSYKNSMFCGSDSFFYLYLQILHFLFVIYFGQTKLRLSNIRGHTEIVSLLLSKGIDVN 187          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: W7T8V6_9STRA (Ankyrin repeat protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8V6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.040e-6
Identity = 43/125 (34.40%), Postives = 58/125 (46.40%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASE--GHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTAL 369
            AA RG  ++   LL++G DV     DG  AL   A+   G+A VV+LLLEKG A+P A  K      +    L   G +  L T + G     G      K         R ++D+Q+G G TAL
Sbjct:   55 AASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRLGNAKVVQLLLEKGGADPGAACKWGSTPLMEAAALGFEGRMQALLTRRRGANQGRGGKSETKKTWSG---GSRVSIDRQDGKGATAL 176          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A399VUN4_RALSL (Ankyrin repeat domain-containing protein n=6 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A399VUN4_RALSL)

HSP 1 Score: 53.5 bits (127), Expect = 4.470e-6
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKD----------GTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
            AA  G +N   +LL++G   +  +  G   L A    G A    +LL++G   P    K P+ +  + +    A  + L+  L+D          G  AL  A+  G+ E+V +LLA  A+V+Q+N  G TAL  A
Sbjct:   43 AASAGNLNAMRVLLDRGAKRDKQTGSGETPLEAAVLNGQAQAACMLLQRGAKLPPPAHK-PYLLPAAALTEDFASAVALVAILRDHDFDPNARMNGDAALHIAAELGNVELVRLLLARGASVEQRNSRGETALAIA 177          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: T0RL16_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RL16_SAPDV)

HSP 1 Score: 53.5 bits (127), Expect = 1.120e-5
Identity = 40/136 (29.41%), Postives = 60/136 (44.12%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGK---ANPNAKDKLPFAVDVSLICLSSAGCLFLL-------YTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
            A H     + + L++ G   EA   +G   L+   S  H   +E+LL +        +   + P    V+   L +A  L  L         L DG T L  A+ RG  E+V +LLAH AN+D  +  G T +M+A
Sbjct: 1035 APHAYRAELIDYLIDHGAWQEARDSNGETPLLLATSLNHVDCIEVLLRRAADVHVVSSMTHETPIMTAVAANFLEAAHLLLGLGRCSPHATDLNDGATLLHDAAARGFVEMVQLLLAHGANIDAVDVDGSTPIMYA 1170          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A4Y2EMN2_ARAVE (Ankyrin-3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2EMN2_ARAVE)

HSP 1 Score: 53.5 bits (127), Expect = 1.120e-5
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKG---KANPNAKDKLP----------------------FAVDVSLICLSSAGCLFLLYTLK--DGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGG 357
            AA  G  N+C++LLEK VDV A   D  + +     EGH  V+ +LL  G    A+P+   KL                        A +V  +    +   + L   +  +  T L  A ++G++E+VD+LL ++ N + +N  G
Sbjct: 1624 AARNGKANVCDLLLEKNVDVNAFRADDESPINLALVEGHKEVLSVLLHHGAYYNAHPSTLLKLNKDNDAGSLLRKVKNLFTAVQNNMASEVETLLKEESNSKYCLANARCVEKETVLHYACLKGYEEIVDILLKYKTNPNTRNETG 1769          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A7S0M2Z9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M2Z9_9CRYP)

HSP 1 Score: 49.7 bits (117), Expect = 3.780e-5
Identity = 34/114 (29.82%), Postives = 53/114 (46.49%), Query Frame = 1
Query:   37 LLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
            L + GV      E+G++ LI  +  GH   V+ L+ KG ANPN+ D                             TA+  A++ GH+E++ +LL+H+A+    + GG T LM A
Sbjct:   20 LSQHGVSPNVRDENGWSPLIMASKNGHVETVKCLIAKG-ANPNSPDI--------------------------SHTAIRAAALFGHREIIRLLLSHKADPCAISLGGRTPLMGA 106          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A813LKL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LKL6_POLGL)

HSP 1 Score: 51.6 bits (122), Expect = 4.040e-5
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRG-HKEVVDVLLAHRANVDQQN 348
            AA +G +   E+LL+   DVEA+ E G++ L + AS+GHA+VV LL++KG A+P          DV++     AG          GT   + A+ +G H EV  VL    AN   Q+
Sbjct:  129 AAWQGHLEATELLLDNRADVEAVDERGWSPLCSAASQGHASVVRLLVQKG-ADPRR--------DVAV-----AG---------QGTMNALQAAAKGRHVEVAQVLKEALANAPAQS 222          
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A4D9D014_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D014_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.770e-5
Identity = 42/128 (32.81%), Postives = 57/128 (44.53%), Query Frame = 1
Query:    1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGAS--EGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
            AA RG  ++   LL++G DV     DG  AL   A+   G+A VV+LLLEKG A+P    K      +    L   G +    T + G     G     +K         R ++D Q+G G TAL  A
Sbjct:   55 AASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRRGNAKVVQLLLEKGGADPGTACKWGSTPLMEAAALGFEGRMQAFLTRRRGENQGRGGKSETNKRWSG---GSRVSIDCQDGKGATALFKA 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI001F09FFB21.020e-731.62ankyrin repeat domain-containing protein n=3 Tax=R... [more]
K0RBF4_THAOC4.830e-745.59Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A2G5DP32_AQUCA1.500e-630.37Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
W7T8V6_9STRA3.040e-634.40Ankyrin repeat protein n=1 Tax=Nannochloropsis gad... [more]
A0A399VUN4_RALSL4.470e-630.15Ankyrin repeat domain-containing protein n=6 Tax=R... [more]
T0RL16_SAPDV1.120e-529.41Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A4Y2EMN2_ARAVE1.120e-527.40Ankyrin-3 n=1 Tax=Araneus ventricosus TaxID=182803... [more]
A0A7S0M2Z9_9CRYP3.780e-529.82Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A813LKL6_POLGL4.040e-535.90Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A4D9D014_9STRA4.770e-532.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89145contigH-elongata_contig89145:1203..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog589873.EP13_16485
Preferred nameankB
KEGG koko:K06867
EggNOG free text desc.COG0666 FOG Ankyrin repeat
EggNOG OGs1RE5N@1224,1S3Z5@1236,468HU@72275,COG0666@1,COG0666@2
COG Functional cat.S
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003700.3
Exons2
Model size378
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89145.16417.1prot_H-elongata_contig89145.16417.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89145 1218..1619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.1528997-UTR-H-elongata_contig89145:1202..12171622931292.1528997-UTR-H-elongata_contig89145:1202..1217Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89145 1203..1217 +
1691679776.4050872-UTR-H-elongata_contig89145:1202..12171691679776.4050872-UTR-H-elongata_contig89145:1202..1217Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89145 1203..1217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.1687622-CDS-H-elongata_contig89145:1217..13791622931292.1687622-CDS-H-elongata_contig89145:1217..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89145 1218..1379 +
1691679776.4306912-CDS-H-elongata_contig89145:1217..13791691679776.4306912-CDS-H-elongata_contig89145:1217..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89145 1218..1379 +
1622931292.1905332-CDS-H-elongata_contig89145:1418..16191622931292.1905332-CDS-H-elongata_contig89145:1418..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89145 1419..1619 +
1691679776.4486406-CDS-H-elongata_contig89145:1418..16191691679776.4486406-CDS-H-elongata_contig89145:1418..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89145 1419..1619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89145.16417.1

>prot_H-elongata_contig89145.16417.1 ID=prot_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPN
AKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVL
LAHRANVDQQNGGGHTALMFA
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mRNA from alignment at H-elongata_contig89145:1203..1619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89145.16417.1 ID=mRNA_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig89145:1203..1619+ (Himanthalia elongata Himel1 dioecious)
GCTGCACACAGAGGCATGGTGAACATCTGCGAAATGCTGTTGGAAAAGGG CGTGGACGTGGAGGCCATGTCAGAAGACGGATTCAACGCTCTCATCGCCG GGGCTAGCGAAGGCCACGCAACCGTCGTGGAACTCCTGCTAGAGAAAGGA AAAGCGAATCCAAACGCCAAGGATAAGGTGCGATGAACAAATGTTTGGAT ACATCACGTTGGCCAGCTGCCCTTTGCAGTAGACGTATCCCTGATTTGTT TAAGTTCAGCTGGTTGCTTGTTTTTGCTCTACACCTTGAAGGACGGTACA ACGGCACTGATGGGGGCATCAGTGCGAGGTCACAAGGAGGTGGTGGATGT CCTACTGGCGCACAGAGCGAACGTGGATCAGCAGAATGGAGGTGGACACA CGGCGCTGATGTTCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig89145:1203..1619+

>mRNA_H-elongata_contig89145.16417.1 ID=mRNA_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig89145:1203..1619+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAACATCTGCGAAATGCTGTTGGAAAAGGGCGTGGACGTGGAGGC
CATGTCAGAAGACGGATTCAACGCTCTCATCGCCGGGGCTAGCGAAGGCC
ACGCAACCGTCGTGGAACTCCTGCTAGAGAAAGGAAAAGCGAATCCAAAC
GCCAAGGATAAGATGGTGAACATCTGCGAAATGCTGTTGGAAAAGGGCGT
GGACGTGGAGGCCATGTCAGAAGACGGATTCAACGCTCTCATCGCCGGGG
CTAGCGAAGGCCACGCAACCGTCGTGGAACTCCTGCTAGAGAAAGGAAAA
GCGAATCCAAACGCCAAGGATAAGCTGCCCTTTGCAGTAGACGTATCCCT
GATTTGTTTAAGTTCAGCTGGTTGCTTGTTTTTGCTCTACACCTTGAAGG
ACGGTACAACGGCACTGATGGGGGCATCAGTGCGAGGTCACAAGGAGGTG
GTGGATGTCCTACTGGCGCACAGAGCGAACGTGGATCAGCAGAATGGAGG
TGGACACACGGCGCTGATGTTCGCCCTGCCCTTTGCAGTAGACGTATCCC
TGATTTGTTTAAGTTCAGCTGGTTGCTTGTTTTTGCTCTACACCTTGAAG
GACGGTACAACGGCACTGATGGGGGCATCAGTGCGAGGTCACAAGGAGGT
GGTGGATGTCCTACTGGCGCACAGAGCGAACGTGGATCAGCAGAATGGAG
GTGGACACACGGCGCTGATGTTCGCC
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