mRNA_H-elongata_contig89118.16415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89118.16415.1
Unique NamemRNA_H-elongata_contig89118.16415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: A0A6H5K1Q4_9PHAE (Protein xylosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 9.920e-24
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARLASH 165
            RLDVAWGGFNVVQASLNAV+LALE++I FHWLWILSG+TYPI SND IR +L+SH
Sbjct:   77 RLDVAWGGFNVVQASLNAVSLALEREIPFHWLWILSGTTYPIVSNDAIRGKLSSH 131
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: D8LMY0_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.000e-23
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARLASH 165
            RLDVAWGGFNVVQASLNAV+LALE++I FHWLWILSG+TYPI SND IR +L+SH
Sbjct:  223 RLDVAWGGFNVVQASLNAVSLALEREIPFHWLWILSGTTYPIVSNDAIRGKLSSH 277
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: A0A7S2AW29_9STRA (Protein xylosyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AW29_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.290e-13
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARLASH 165
            R++V+WGGFNVVQ +LN +  A++K I FHWL  LSG TYP+ SN  IR  LA +
Sbjct:   94 RVNVSWGGFNVVQGTLNGIMYAVQKGIPFHWLVTLSGYTYPLVSNQKIRETLAKY 148
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: A0A8J2SSV4_9STRA (Protein xylosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-10
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEK-DISFHWLWILSGSTYPIASNDDIRARLASH 165
            R  V+WGGFNVVQA+LN +A AL+  D  F W+   SG TYP+ASN  IR  LA H
Sbjct:  189 RQSVSWGGFNVVQATLNGLAYALDVLDGKFDWIVTASGYTYPLASNRRIREELARH 244
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: W7U9L2_9STRA (Protein xylosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9L2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.290e-8
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARLASH 165
            R++V+WGGF+VVQA+LNA++      + F  +  LSG+TYP+A+   IRA LA H
Sbjct:  211 RVNVSWGGFSVVQATLNAISYGFYLKLPFDRVINLSGATYPLATPRQIRATLAQH 265
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: A0A1Z5KSA0_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSA0_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLN------AVALALEKDISFHWLWILSGSTYPIASNDDIRARLASH 165
            R+ V WGGF++V A+L       AVA    K + FH    LS S+YP+ASN +IR +LAS+
Sbjct:  256 RVRVNWGGFSMVNATLQMLQYALAVAETTRKPLEFHKFVHLSSSSYPLASNSEIRIQLASY 316
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: UPI001A97B0EF (hypothetical protein n=1 Tax=Segetibacter sp. SYSU D00508 TaxID=2810307 RepID=UPI001A97B0EF)

HSP 1 Score: 52.4 bits (124), Expect = 1.810e-6
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDI 144
            R+ + WGGF +V+A+LNA+       I+F+W+ +LSG  YPI  ND I
Sbjct:   59 RVPINWGGFGLVEATLNAMHDIKNHSINFNWISLLSGQDYPIKKNDFI 106
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BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: UPI0019B2B06D (Uncharacterized protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019B2B06D)

HSP 1 Score: 50.8 bits (120), Expect = 6.510e-6
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARLAS 162
            RL +AWG +N+VQA+L+ +  A ++  S H+  +LSG  YPI SN +I A+L+S
Sbjct:   58 RLPIAWGEWNMVQATLDLLRRAHQQSPSTHYQ-LLSGDCYPIKSNQEIAAKLSS 110
[Close]
BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: A0A1Z5KH39_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KH39_FISSO)

HSP 1 Score: 50.4 bits (119), Expect = 9.340e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKD------ISFHWLWILSGSTYPIASNDDIRARLASH 165
            R+ V WGGF++V A+L  +  +L  D      + FH    LS S+YP+ASN +IR +LAS+
Sbjct:  263 RVRVNWGGFSMVNATLQMLQYSLAVDDTTREPLEFHKFVHLSSSSYPLASNSEIRIQLASY 323
[Close]
BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Match: UPI0011402328 (beta-1,6-N-acetylglucosaminyltransferase n=4 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI0011402328)

HSP 1 Score: 48.9 bits (115), Expect = 1.090e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRARL 156
            R+DV WG ++ +QASLN    ALE D  F +L++LSG   P  SN+ I  +L
Sbjct:   34 RIDVTWGTYSQIQASLNLFNKALEYD--FDYLFLLSGDDIPCMSNEQINVQL 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89118.16415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K1Q4_9PHAE9.920e-2481.82Protein xylosyltransferase n=1 Tax=Ectocarpus sp. ... [more]
D8LMY0_ECTSI1.000e-2381.82Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A7S2AW29_9STRA2.290e-1356.36Protein xylosyltransferase n=1 Tax=Dictyocha specu... [more]
A0A8J2SSV4_9STRA2.220e-1057.14Protein xylosyltransferase n=1 Tax=Pelagomonas cal... [more]
W7U9L2_9STRA1.290e-849.09Protein xylosyltransferase n=2 Tax=Monodopsidaceae... [more]
A0A1Z5KSA0_FISSO1.420e-645.90Protein xylosyltransferase n=1 Tax=Fistulifera sol... [more]
UPI001A97B0EF1.810e-645.83hypothetical protein n=1 Tax=Segetibacter sp. SYSU... [more]
UPI0019B2B06D6.510e-646.30Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
A0A1Z5KH39_FISSO9.340e-642.62Protein xylosyltransferase n=1 Tax=Fistulifera sol... [more]
UPI00114023281.090e-546.15beta-1,6-N-acetylglucosaminyltransferase n=4 Tax=K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89118contigH-elongata_contig89118:185..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6.7e-20
Seed eggNOG ortholog2880.D8LMY0
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
Ec32 ortholog descriptionXylosyltransferase, family GT14
Ec32 orthologEc-02_004080.1
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.9382496-CDS-H-elongata_contig89118:184..3491622931291.9382496-CDS-H-elongata_contig89118:184..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89118 185..349 +
1691679776.34268-CDS-H-elongata_contig89118:184..3491691679776.34268-CDS-H-elongata_contig89118:184..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89118 185..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89118.16415.1prot_H-elongata_contig89118.16415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89118 185..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89118.16415.1

>prot_H-elongata_contig89118.16415.1 ID=prot_H-elongata_contig89118.16415.1|Name=mRNA_H-elongata_contig89118.16415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RLDVAWGGFNVVQASLNAVALALEKDISFHWLWILSGSTYPIASNDDIRA
RLASH
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mRNA from alignment at H-elongata_contig89118:185..349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89118.16415.1 ID=mRNA_H-elongata_contig89118.16415.1|Name=mRNA_H-elongata_contig89118.16415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig89118:185..349+ (Himanthalia elongata Himel1 dioecious)
AGGCTGGACGTGGCCTGGGGGGGGTTCAACGTGGTTCAGGCGTCGCTCAA
CGCCGTCGCGCTCGCCCTGGAGAAAGACATTTCTTTTCACTGGCTATGGA
TATTGAGCGGTTCCACGTATCCGATCGCCTCCAACGACGACATCCGGGCC
AGGCTTGCCTCTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig89118:185..349+

>mRNA_H-elongata_contig89118.16415.1 ID=mRNA_H-elongata_contig89118.16415.1|Name=mRNA_H-elongata_contig89118.16415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig89118:185..349+ (Himanthalia elongata Himel1 dioecious)
AGGCTGGACGTGGCCTGGGGGGGGTTCAACGTGGTTCAGGCGTCGCTCAA
CGCCGTCGCGCTCGCCCTGGAGAAAGACATTTCTTTTCACTGGCTATGGA
TATTGAGCGGTTCCACGTATCCGATCGCCTCCAACGACGACATCCGGGCC
AGGCTTGCCTCTCACAGGCTGGACGTGGCCTGGGGGGGGTTCAACGTGGT
TCAGGCGTCGCTCAACGCCGTCGCGCTCGCCCTGGAGAAAGACATTTCTT
TTCACTGGCTATGGATATTGAGCGGTTCCACGTATCCGATCGCCTCCAAC
GACGACATCCGGGCCAGGCTTGCCTCTCAC
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