mRNA_H-elongata_contig89006.16410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89006.16410.1
Unique NamemRNA_H-elongata_contig89006.16410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89006.16410.1 vs. uniprot
Match: A0A6H5K9J2_9PHAE (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.200e-14
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   13 ITMAGIYHEKQHLMHCAVHTLNNLFQEQWATASLLEDISKEL 138
            ++   ++HEKQ+LMHCAVHTLNNLFQE WATASL+EDI+KEL
Sbjct:    1 MSSVDMFHEKQYLMHCAVHTLNNLFQESWATASLMEDIAKEL 42
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BLAST of mRNA_H-elongata_contig89006.16410.1 vs. uniprot
Match: D7FI75_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI75_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   28 IYHEKQHLMHCAVHTLNNLFQEQWATASLLEDISKEL 138
            +YHE+Q LM CA+H LNNLFQE WA   L+E ++ EL
Sbjct:    1 MYHERQRLMQCAMHALNNLFQEPWANRELMERLALEL 37
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BLAST of mRNA_H-elongata_contig89006.16410.1 vs. uniprot
Match: A0A183J0H5_9BILA (NudC domain-containing protein 1 n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J0H5_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 NLSQITMAGIYHEKQHLMHCAVHTLNNLFQEQWATASLLEDISK 132
            N+ Q + + IYHEKQH   CAVHTLNNLFQE+  +   L++IS+
Sbjct:  598 NVDQESESKIYHEKQHFQFCAVHTLNNLFQERLFSKRCLDEISE 641
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89006.16410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9J2_9PHAE6.200e-1473.81Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI75_ECTSI1.310e-659.46Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A183J0H5_9BILA1.370e-654.55NudC domain-containing protein 1 n=1 Tax=Soboliphy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89006contigH-elongata_contig89006:477..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.395908-CDS-H-elongata_contig89006:476..5991622931291.395908-CDS-H-elongata_contig89006:476..599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89006 477..599 -
1691679776.0637324-CDS-H-elongata_contig89006:476..5991691679776.0637324-CDS-H-elongata_contig89006:476..599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89006 477..599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.4107368-UTR-H-elongata_contig89006:599..6171622931291.4107368-UTR-H-elongata_contig89006:599..617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89006 600..617 -
1691679776.0797038-UTR-H-elongata_contig89006:599..6171691679776.0797038-UTR-H-elongata_contig89006:599..617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89006 600..617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89006.16410.1prot_H-elongata_contig89006.16410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89006 477..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89006.16410.1

>prot_H-elongata_contig89006.16410.1 ID=prot_H-elongata_contig89006.16410.1|Name=mRNA_H-elongata_contig89006.16410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MAGIYHEKQHLMHCAVHTLNNLFQEQWATASLLEDISKEL*
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mRNA from alignment at H-elongata_contig89006:477..617-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89006.16410.1 ID=mRNA_H-elongata_contig89006.16410.1|Name=mRNA_H-elongata_contig89006.16410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig89006:477..617- (Himanthalia elongata Himel1 dioecious)
AATCTCTCACAAATCACCATGGCTGGCATCTATCATGAGAAGCAGCACCT
AATGCACTGTGCCGTGCATACGCTCAACAACTTGTTTCAAGAACAATGGG
CGACCGCTTCACTCCTCGAAGACATCTCGAAAGAGCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig89006:477..617-

>mRNA_H-elongata_contig89006.16410.1 ID=mRNA_H-elongata_contig89006.16410.1|Name=mRNA_H-elongata_contig89006.16410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig89006:477..617- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGCATCTATCATGAGAAGCAGCACCTAATGCACTGTGCCGTGCA
TACGCTCAACAACTTGTTTCAAGAACAATGGGCGACCGCTTCACTCCTCG
AAGACATCTCGAAAGAGCTGTGAATGGCTGGCATCTATCATGAGAAGCAG
CACCTAATGCACTGTGCCGTGCATACGCTCAACAACTTGTTTCAAGAACA
ATGGGCGACCGCTTCACTCCTCGAAGACATCTCGAAAGAGCTGTGA
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