mRNA_H-elongata_contig88997.16409.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 115 bits (288), Expect = 5.590e-29 Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR--DSRKKVGLLKKAMYGLVHAGLLW 429
W +A+ EM+ W++V++P+ K +G R +F K DG IE+YK RLVA+G + GI Y+E+ +P ++R+VL++ A GW+ QLDV ++ ++EEE+Y+E+P+ ++ + R KV LLKKA+YGL + W
Sbjct: 6 WTQAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 118 bits (295), Expect = 4.880e-28 Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
W+ A+A+E++ + W+VV+ P K +G + ++ K + DG IE+YK RLVAQG +I+GI Y+E SP S+R L+++ A WE Q+DVN ++ D+EEE+Y++LPE ++ + K KV L+K++YGL A W
Sbjct: 565 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 117 bits (293), Expect = 6.700e-28 Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
W+ A+A+E++ + W+VV+ P K +G + ++ K + DG IE+YK RLVAQG +I+GI Y+E+ SP S+R L++ A WE Q+DVN ++ D+EEE+Y++LPE ++ + K KV L+K++YGL A W
Sbjct: 96 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 116 bits (291), Expect = 1.710e-27 Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
W+ A+A+E++ + W+VV+ P K +G + ++ K + DG IE+YK RLVAQG +I+GI Y+E SP S+R L++ A WE Q+DVN ++ D+EEE+Y++LPE ++ + K KV L+K++YGL A W
Sbjct: 819 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 108 bits (271), Expect = 3.470e-27 Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAY--------RDSRKKVGLLKKAMYGLVHAGLLW 429
WK+A+ E + W +V+RP+ KTV+G+R VF K+ DG +E+ K RLVA+G +I G HY E+ + +SIR V+++ A E QLD Y+ ++EEEIY+E+P+ +D KV ++KA+YGL +G +W
Sbjct: 32 WKKAMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: W8BPA6_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BPA6_CERCA) HSP 1 Score: 110 bits (274), Expect = 2.760e-25 Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK--KVGLLKKAMYGLVHAGLLW 429
W+ A+ E D T G W + +RP K V+G R VF +K D+ GK+EKYK RLVAQGC + G +E + +P +IR++LS+ A +DV Y+ ++EEE+Y+ PE + D K KV L+K++YGL AG W
Sbjct: 316 WRVAMQAEYDSLTKSGAWTLTDRPHGKNVIGCRWVFVKKYDETGKLEKYKARLVAQGCSQKPGEDFELTYAPVVRHTTIRLILSLAAQQKLLVNHIDVVAAYLNGELEEELYMRQPEGFVDKTKPNKVCRLQKSLYGLKQAGRYW 460
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY) HSP 1 Score: 108 bits (270), Expect = 1.150e-24 Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKK--VGLLKKAMYGLVHAG 420
W AIA+EM S G + +VE PK ++G++ VF K + +G+IE YK RLVAQG ++ GI + E+ +P ASIR++L++ A WE Q+DV VY+ D+EEEIY+ P + K+ V LK+ +YGL +G
Sbjct: 760 WTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSG 901
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438I0K1_VITVI (Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I0K1_VITVI) HSP 1 Score: 107 bits (268), Expect = 1.860e-24 Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDS--RKKVGLLKKAMYGLVHAGLLW 429
W+ AI EM+ W++V+ PK K +G + VF K DG IE+YK RLVA+G + GI Y+E+ +P SIR++LS+ W QLDV ++ D+EEE++++LP + + +KKV LKK++YGL W
Sbjct: 108 WRSAIQEEMNALLKNRTWEIVDLPKEKKTMGCKWVFTIKCKPDGSIERYKVRLVAKGFTQTYGIDYQETFAPVAKINSIRILLSLTVHFNWPLHQLDVKNAFLNGDLEEEVFMDLPSGFEEKLEKKKVYRLKKSLYGLKQPPRAW 252
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 107 bits (268), Expect = 2.140e-24 Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR-DSRKKVGLLKKAMYGLVHAGLLW 429
W+ A+ EM W +V+ PK K V+G R +F K+ DGKI++YK RLVAQG + GI YEE+ +P SIR+++S+ A L W+ QLDV ++ +EEE+Y++LP + ++ V L K++YGL + W
Sbjct: 864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A5B683_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B683_VITVI) HSP 1 Score: 107 bits (266), Expect = 3.890e-24 Identity = 57/145 (39.31%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSR--KKVGLLKKAMYGLVHAGLLW 429
WK A+ EM+ G W+VV+ P+ K V+G + VF K DG +E+YK RLVA+G + GI Y+E+ +P SIR++LS+ W QLDV V++ D+EEE+++ P + +S +KV LKK++YGL + W
Sbjct: 501 WKLAVFEEMNALKKNGTWEVVDLPREKKVVGCKWVFTIKSKADGSVERYKARLVAKGFTQTYGIDYQETFAPVAKINSIRVLLSLTVNSNWPLHQLDVKNVFLNGDLEEEVFMSPPPGFEESFGVRKVCKLKKSLYGLKRSPRAW 645 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88997.16409.1 >prot_H-elongata_contig88997.16409.1 ID=prot_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLKback to top mRNA from alignment at H-elongata_contig88997:2122..2553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88997.16409.1 ID=mRNA_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig88997:2122..2553+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88997:2122..2553+ >mRNA_H-elongata_contig88997.16409.1 ID=mRNA_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig88997:2122..2553+ (Himanthalia elongata Himel1 dioecious)back to top |