mRNA_H-elongata_contig8897.16405.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: D7FLE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE7_ECTSI) HSP 1 Score: 217 bits (553), Expect = 6.460e-62 Identity = 127/192 (66.15%), Postives = 144/192 (75.00%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRNLLLLRRTSNASSEGEGGTPRGTSA-GACGSATAEQTKLPPPMPSPQHSPAIPSTAC------TMDMPPTSKSPGGRGRSPAGGSP 728
+ES+NIL+AI AVN+F++AG+EKGGVLVHCAGGRSRSAAFVVAFIMSTQ C YD A++QVRRARPV S+NRGFEQQLRAYGAAQCDVFAAHQ++LRIRAA LLDRRNLLLLRR+S G TP T GA G AE T+ P PS QH A T +PPT +SP GRGRSPAG +P
Sbjct: 73 KESSNILTAIGAVNIFVEAGIEKGGVLVHCAGGRSRSAAFVVAFIMSTQGCSYDAAYAQVRRARPVASVNRGFEQQLRAYGAAQCDVFAAHQMMLRIRAAALLDRRNLLLLRRSS-------GVTPSETVGDGAAGGEAAEHTRTSPTRPSAQHQLGATGAAXXXXSVSTAGIPPTPRSPRGRGRSPAGINP 257
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A836CLF0_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF0_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.770e-30 Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDR 488
+E +IL A+ A +VFI+AG EKGGVLVHCAGGRSRSAAF+ A++M Q+ +D A Q++ ARPVV++NRGFE QLRAY A DVF +HQL+LR R + +R
Sbjct: 58 KEEADILGALGAASVFIEAGTEKGGVLVHCAGGRSRSAAFIAAYLMMKQDFTFDQAVEQLKAARPVVAINRGFELQLRAYEATGYDVFQSHQLMLRARVSQNTER 162
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A1V9ZRS5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRS5_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.950e-26 Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRNLLL 503
+E TNILS I VF++AGM+ GGVLVHCAGGRSRS A +A+IMST YD A +++R RPVVSLN GFE+QL+ + A+ DVF AHQ++L+ + +RR+ L
Sbjct: 458 KEYTNILSCIPVATVFLEAGMQNGGVLVHCAGGRSRSPAIAIAYIMSTLGFSYDDALAKLRSIRPVVSLNSGFEEQLQCFEKAKLDVFKAHQMLLQSKIVRARNRRSQCL 567
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A0A7CLY8_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CLY8_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.930e-26 Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRNLLL 503
+E TNILS I VF++AGM+ GGVLVHCAGGRSRS A +A+IMST YD A +++R RPVVSLN GFE+QL+ + A+ DVF AHQ++L+ + +RR+ L
Sbjct: 499 KEYTNILSCIPVATVFLEAGMQNGGVLVHCAGGRSRSPAIAIAYIMSTLGFSYDDALAKLRSIRPVVSLNSGFEEQLQCFEKAKLDVFKAHQMLLQSKIVRARNRRSQCL 608
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A485LIB3_9STRA (Aste57867_21739 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIB3_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.910e-25 Identity = 61/122 (50.00%), Postives = 81/122 (66.39%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRNLLLLRRTSNASSEGE 539
+E TNILS + VF++ GM++GGVLVHCAGGRSRS A +A IMST YD A ++VR ARPVVSLN GFE QLR + A+ D++ AHQ++L+ + RR+ L +AS + E
Sbjct: 78 KEYTNILSCVPITTVFLETGMQQGGVLVHCAGGRSRSPAIAIAHIMSTLGLSYDDALTKVRTARPVVSLNTGFEDQLRCFEKAKRDIYGAHQMLLQTKLVRARMRRSQNLPHELDHASKKPE 199
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: K8YQU6_NANGC (Slingshot (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQU6_NANGC) HSP 1 Score: 107 bits (266), Expect = 3.900e-25 Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 3
Query: 177 ESTNILSAIDAVNVFIQAGMEKG-GVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRR 491
ES N+L+ + A FI+ +E+G GVLVHC+GGRSRSA+ V+A++MS ++ AF++VR ARPV+ LN+GFE QL+AY CDV+ AHQ +LRIR + + R
Sbjct: 25 ESANLLACLPAAFTFIETALEEGTGVLVHCSGGRSRSASLVIAYLMSKLKLTFEDAFARVRAARPVIQLNQGFEMQLQAYEDQACDVYRAHQQVLRIRLHSFAELR 130
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A024UED3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UED3_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.260e-25 Identity = 58/110 (52.73%), Postives = 79/110 (71.82%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRNLLL 503
++ TN+LS I VF+++GM++GG+LVHCAGGRSRS A V+A++MS +D A S+VR ARPVV LN GFE QLR + A+ DV+AAHQL+L+ + RR+ LL
Sbjct: 92 KDYTNLLSCIPIATVFLESGMQQGGILVHCAGGRSRSPAIVIAYLMSALGHSFDDAISKVRIARPVVQLNSGFEDQLRCFEKAKRDVYAAHQLLLQTKIVRARLRRSQLL 201
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A835Z9L3_9STRA (MAP kinase phosphatase with leucine-rich repeats protein 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L3_9STRA) HSP 1 Score: 106 bits (265), Expect = 5.780e-25 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAAT 476
RE IL A+ A VFI AG+EKGGVLVHCAGGRSRSAA + ++M+ +D A +R RPVV++N+GFEQQLRA+ A + D+F ++Q++LR R T
Sbjct: 72 REDAAILGALGATAVFIDAGVEKGGVLVHCAGGRSRSAAIIAGYLMAKHAYTFDRALEALRVVRPVVAINKGFEQQLRAFEATRFDLFKSNQMMLRARVRT 172
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: W4G0P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0P6_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.870e-24 Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRRN 494
++ TN+LS + VF+++GM+ GGVLVHCAGGRSRS A VVA++MST +D A +VR ARPV SLN GFE QLR + A+ DV+ AHQL+L+ + RR+
Sbjct: 91 KDYTNLLSCVPIATVFLESGMQHGGVLVHCAGGRSRSPAIVVAYLMSTLGTSFDEALIKVRTARPVASLNSGFEDQLRCFEKAKRDVYVAHQLLLQTKIVRARLRRS 197
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Match: A0A067CFV7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFV7_SAPPC) HSP 1 Score: 107 bits (267), Expect = 4.720e-23 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 3
Query: 174 RESTNILSAIDAVNVFIQAGMEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNRGFEQQLRAYGAAQCDVFAAHQLILRIRAATLLDRR 491
+E TN+LS + VF++AGM+ GGVLVHCAGGRSRS A +A+IM TQ Y AF+++R R VV+LN GFE QL+ AQ DVF AHQL+L+ + RR
Sbjct: 74 KEYTNLLSCLPITTVFLEAGMQNGGVLVHCAGGRSRSPAIAMAYIMLTQGFPYAEAFAKLRSVRSVVALNTGFEDQLQCLEKAQLDVFKAHQLLLQTKMVRARARR 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8897.16405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8897.16405.1 >prot_H-elongata_contig8897.16405.1 ID=prot_H-elongata_contig8897.16405.1|Name=mRNA_H-elongata_contig8897.16405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp MEKGGVLVHCAGGRSRSAAFVVAFIMSTQNCGYDVAFSQVRRARPVVSLNback to top mRNA from alignment at H-elongata_contig8897:673..3145+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8897.16405.1 ID=mRNA_H-elongata_contig8897.16405.1|Name=mRNA_H-elongata_contig8897.16405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2473bp|location=Sequence derived from alignment at H-elongata_contig8897:673..3145+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8897:673..3145+ >mRNA_H-elongata_contig8897.16405.1 ID=mRNA_H-elongata_contig8897.16405.1|Name=mRNA_H-elongata_contig8897.16405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig8897:673..3145+ (Himanthalia elongata Himel1 dioecious)back to top |