mRNA_H-elongata_contig88893.16398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88893.16398.1
Unique NamemRNA_H-elongata_contig88893.16398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88893.16398.1 vs. uniprot
Match: D7FQI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 8.290e-53
Identity = 94/131 (71.76%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:   19 DLFDDSE-EVSLVEFDPNHLDMA-EEAGISIKKVDAEGYGVEVEVLSDDVSTVLILSPEEECIGAKLQGFIPREDGGPSALEMHGQLVEGDVLTHLNGSNARLVEFSDILKACRSPDRGGLPRPLVMKFSR 405
            D+ DDS+ EVSL+  D + L+    EAGI +K VDAEG  VEV VLS+DVST L+ +PEEE +GAK+ GF+PREDGG SALEMHGQL+EGDVLTHLNGSNARL++F+DILKACR PDRGGLPRPLVMKFSR
Sbjct:   13 DMDDDSDDEVSLLVVDEDELNTTLNEAGIQVK-VDAEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSR 142
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BLAST of mRNA_H-elongata_contig88893.16398.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.020e-48
Identity = 93/134 (69.40%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:   10 ISEDLFDDSE-EVSLVEFDPNHLDMA-EEAGISIKKVDAEGYGVEVEVLSDDVSTVLILSPEEECIGAKLQGFIPREDGGPSALEMHGQLVEGDVLTHLNGSNARLVEFSDILKACRSPDRGGLPRPLVMKFSR 405
            +  D+ DDS+ EVSL+  D + L+    EAGI +K VD EG  VEV VLS+DVST L+ +PEEE +GAK+ GF+PREDGG SALEMHGQL+EGDVLTHLNGSNARL++F+DILKACR PDRGGLPRPLVMKFSR
Sbjct:   10 VDPDMDDDSDDEVSLLVVDEDELNTTLNEAGIQVK-VDKEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSR 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88893.16398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQI4_ECTSI8.290e-5371.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZQ7_9PHAE3.020e-4869.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88893contigH-elongata_contig88893:386..2438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008780.1
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88893.16398.1prot_H-elongata_contig88893.16398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88893 386..2438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.844595-CDS-H-elongata_contig88893:385..4931622931289.844595-CDS-H-elongata_contig88893:385..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 386..493 +
1691679775.476312-CDS-H-elongata_contig88893:385..4931691679775.476312-CDS-H-elongata_contig88893:385..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 386..493 +
1622931289.8613544-CDS-H-elongata_contig88893:1068..12301622931289.8613544-CDS-H-elongata_contig88893:1068..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 1069..1230 +
1691679775.48772-CDS-H-elongata_contig88893:1068..12301691679775.48772-CDS-H-elongata_contig88893:1068..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 1069..1230 +
1622931289.875712-CDS-H-elongata_contig88893:2303..24381622931289.875712-CDS-H-elongata_contig88893:2303..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 2304..2438 +
1691679775.505583-CDS-H-elongata_contig88893:2303..24381691679775.505583-CDS-H-elongata_contig88893:2303..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88893 2304..2438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88893.16398.1

>prot_H-elongata_contig88893.16398.1 ID=prot_H-elongata_contig88893.16398.1|Name=mRNA_H-elongata_contig88893.16398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
NGDISEDLFDDSEEVSLVEFDPNHLDMAEEAGISIKKVDAEGYGVEVEVL
SDDVSTVLILSPEEECIGAKLQGFIPREDGGPSALEMHGQLVEGDVLTHL
NGSNARLVEFSDILKACRSPDRGGLPRPLVMKFSR
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mRNA from alignment at H-elongata_contig88893:386..2438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88893.16398.1 ID=mRNA_H-elongata_contig88893.16398.1|Name=mRNA_H-elongata_contig88893.16398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2053bp|location=Sequence derived from alignment at H-elongata_contig88893:386..2438+ (Himanthalia elongata Himel1 dioecious)
AATGGAGACATCAGTGAGGACCTTTTTGACGATTCCGAAGAGGTTTCTCT
CGTGGAGTTTGATCCGAATCACCTAGACATGGCGGAAGAAGCAGGCATCT
CCATCAAGGTGCTACTTAGAAGTGGACGTTCGTTCCCTTGCAGTAGGCCC
AAACAACGAAAGCCTCTCTGACATTCTCGGATGTTGGCGTTGTCATTGCC
TCATTTTGCAAGCTCGTGCTGTAGCGAGGACTTGCTCGGGCGTTCGTATG
CAGAAGACATATAGCGCCATAGCCCGTGTTCGCATTAGATTGTAGCTGCT
CATCACGCGTGGGCGGTCGACGTACGTTTTTGTACTACAGGCAGTACGCT
CGTGCTGCTGAGGACTGATAGCTTCGTACCAGGCAGCAAGTGCGCGCTTG
TGTGTATTACCCTGGTACTCCTGCTGAATGTTATTCTAGCTCTTATCAGT
GTTGAGAGCTTGACTCCCGAACATGTTCCGACCGAGGTTCCAAAATCGAA
TAAAGGAAAGAATTTACGAACAACAGTACCCTAGTACGATTTGTAATAGA
ACAGTAATAAGAATATATATTTTAGGCGGAATTTATATCAAAAGAACTTC
CGACAAAAGGGTCACTCCAGAGGCTCTTTCCTCCTTCCCCGCTCCTCTGA
CCAAACGCGCTGCGTCCGCTCCGATCGATGAAGAAGGTGGATGCGGAAGG
CTACGGGGTCGAGGTCGAAGTTCTGAGCGATGATGTGTCAACGGTTTTGA
TTCTATCTCCAGAAGAGGAGTGCATCGGCGCCAAGCTCCAGGGTTTCATC
CCTCGGGAAGACGGGGGGCCGAGCGCTCTCGAGATGCACGGGCAGGTCAA
AAATTAAACGAATAGAGCTAGTCGTACAGTCGTTGGTTGTCATTGTTTTG
TGTGTTTATTCACCTCCTACAGTCACCAACCTTTACCACGAGACTATTAA
TAGACATTTTGGGTCGCTTTCACCCTACCTGAGTTTTTGCTGTTCATGTG
AAGCAGATCAACAATTTTTTCTTAAAAAAAATATATATGAACTCATTCCA
GCCCTCCGAATATCTACGATTCAAACCCTCCGATCATCCACAGGTTACTG
GCCTCGCCCTTCCCATGTCCAGCGCTTGAACCCGTGAACTTCCTTTGCTG
AAAATCCAACGTCGTACATACCGCCCTTTGTACCCTGTTTTCTTTGGTTC
TATCCCAACATCGCGGTGCGTCCACCGTTCGATGCTTGATTTCCCAAACG
TTGCTGTTGGAAGGAGCTCTAAACGTGCTGCTGTCGCAGCTGAAGCCGTA
CCGTATTATCGTATAATGCCACCATCCATAGTCAAGGTACGTCATAATAT
ACCTATACTCACTAAATACTACTATAGCTTCTATGGAGAATGTTCAATGT
ACCCCATAGCTCACGAGAGTCACTCATACTTCCAACGCATCTAGGCAGAG
AATGATCAATGTACCCCATAGCTCACAGAGTCACTCATCCCACCCCCCCT
CTCTCTCTATAGCCCACAGTCCGAAATTAAACGATATATATGCAGAATGC
AACCATGTCCTTTACTAACCTACTATATCCTTTTAAAAAATATACTCACG
TGTGACGATTTTGTGCTCAAAGGTAGTACTGTACACATTCGAACCTGACG
ATAGTTGGTCCCCTGGATGGTACCTCTCACGGCGCTAAGAAGGTGTGGAT
GTTCGAAGGGTTGGAATGAGTTCAAGTTTTTTTAAAATAATAATCTCACA
GAACCCCGACGGGCTTAGAACGCCCTCACTCGTGCCTACAGCAAATGCAA
TTGCAGCTTTTGTCGCAGAAGCTTTGTCATTCGCTCGAAAAGGTCGCGTG
TCTCATGACGACCGAACCCCCTCCCCACCCTCCTTTCTGTCGCGTTCGTG
CATATAACGCGGTTTCAGCTGGTGGAAGGTGACGTACTCACGCACCTCAA
CGGGAGCAACGCGAGGCTGGTCGAGTTCTCCGACATACTCAAGGCCTGTA
GAAGTCCAGATAGAGGGGGCTTGCCACGGCCACTGGTCATGAAGTTTTCG
AGG
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Coding sequence (CDS) from alignment at H-elongata_contig88893:386..2438+

>mRNA_H-elongata_contig88893.16398.1 ID=mRNA_H-elongata_contig88893.16398.1|Name=mRNA_H-elongata_contig88893.16398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig88893:386..2438+ (Himanthalia elongata Himel1 dioecious)
AATGGAGACATCAGTGAGGACCTTTTTGACGATTCCGAAGAGGTTTCTCT
CGTGGAGTTTGATCCGAATCACCTAGACATGGCGGAAGAAGCAGGCATCT
CCATCAAGAATGGAGACATCAGTGAGGACCTTTTTGACGATTCCGAAGAG
GTTTCTCTCGTGGAGTTTGATCCGAATCACCTAGACATGGCGGAAGAAGC
AGGCATCTCCATCAAGAAGGTGGATGCGGAAGGCTACGGGGTCGAGGTCG
AAGTTCTGAGCGATGATGTGTCAACGGTTTTGATTCTATCTCCAGAAGAG
GAGTGCATCGGCGCCAAGCTCCAGGGTTTCATCCCTCGGGAAGACGGGGG
GCCGAGCGCTCTCGAGATGCACGGGCAGAAGGTGGATGCGGAAGGCTACG
GGGTCGAGGTCGAAGTTCTGAGCGATGATGTGTCAACGGTTTTGATTCTA
TCTCCAGAAGAGGAGTGCATCGGCGCCAAGCTCCAGGGTTTCATCCCTCG
GGAAGACGGGGGGCCGAGCGCTCTCGAGATGCACGGGCAGCTGGTGGAAG
GTGACGTACTCACGCACCTCAACGGGAGCAACGCGAGGCTGGTCGAGTTC
TCCGACATACTCAAGGCCTGTAGAAGTCCAGATAGAGGGGGCTTGCCACG
GCCACTGGTCATGAAGTTTTCGAGGCTGGTGGAAGGTGACGTACTCACGC
ACCTCAACGGGAGCAACGCGAGGCTGGTCGAGTTCTCCGACATACTCAAG
GCCTGTAGAAGTCCAGATAGAGGGGGCTTGCCACGGCCACTGGTCATGAA
GTTTTCGAGG
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