mRNA_H-elongata_contig8868.16384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8868.16384.1
Unique NamemRNA_H-elongata_contig8868.16384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8868.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8868contigH-elongata_contig8868:2259..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size860
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8868.16384.1prot_H-elongata_contig8868.16384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8868 2401..3063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.9645736-UTR-H-elongata_contig8868:2258..24001622931287.9645736-UTR-H-elongata_contig8868:2258..2400Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8868 2259..2400 +
1691679774.6454668-UTR-H-elongata_contig8868:2258..24001691679774.6454668-UTR-H-elongata_contig8868:2258..2400Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8868 2259..2400 +
1622931288.0868444-UTR-H-elongata_contig8868:3063..32861622931288.0868444-UTR-H-elongata_contig8868:3063..3286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8868 3064..3286 +
1691679774.6751509-UTR-H-elongata_contig8868:3063..32861691679774.6751509-UTR-H-elongata_contig8868:3063..3286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8868 3064..3286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931288.0377111-CDS-H-elongata_contig8868:2400..28531622931288.0377111-CDS-H-elongata_contig8868:2400..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8868 2401..2853 +
1691679774.6555147-CDS-H-elongata_contig8868:2400..28531691679774.6555147-CDS-H-elongata_contig8868:2400..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8868 2401..2853 +
1622931288.0687547-CDS-H-elongata_contig8868:3021..30631622931288.0687547-CDS-H-elongata_contig8868:3021..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8868 3022..3063 +
1691679774.6649024-CDS-H-elongata_contig8868:3021..30631691679774.6649024-CDS-H-elongata_contig8868:3021..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8868 3022..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8868.16384.1

>prot_H-elongata_contig8868.16384.1 ID=prot_H-elongata_contig8868.16384.1|Name=mRNA_H-elongata_contig8868.16384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MIVVRALPASGPFLIFRALPAPGPFLLRYGPGCFLYFKYFLPILRKNTVD
GWKVKLYQFSQQSRVPLLSYSAMRHFFFSAMRRNVSSSASVHPSIWFKKL
SSIFRIFSSLTSMPSSSERFYSRPGRSSAATPLLSVLLGVGSGAVLFRIA
PEAGDISRHKHCTY*
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mRNA from alignment at H-elongata_contig8868:2259..3286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8868.16384.1 ID=mRNA_H-elongata_contig8868.16384.1|Name=mRNA_H-elongata_contig8868.16384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-elongata_contig8868:2259..3286+ (Himanthalia elongata Himel1 dioecious)
AGCTCGTCCGGGGAGAAAATATTTCGTTGTGTCTCCCAGTTTGAGGGACG
CTGCTGTCCTGGTGTTTCAGCTGCCGCAGCGGATGATTGTTCAAGTTGAC
TTGTGCCAGTCGACGACTTTTTGAGCTGACTTGTATCAGCCGATGATTGT
TGTTCGAGCTCTTCCAGCTTCCGGTCCATTCCTGATTTTTCGAGCTCTTC
CAGCTCCGGGTCCATTCCTTCTTCGTTATGGCCCTGGGTGTTTCCTTTAT
TTTAAATATTTTCTTCCGATCCTTCGGAAAAATACGGTCGATGGTTGGAA
AGTCAAGCTGTACCAATTTTCCCAACAATCACGTGTGCCGCTTCTCTCCT
ACTCGGCCATGCGGCATTTCTTCTTCTCTGCTATGCGTAGAAATGTCTCG
AGTTCAGCATCTGTACATCCCTCGATCTGGTTTAAGAAACTCTCGTCCAT
TTTTCGTATTTTCTCTTCTTTGACATCGATGCCTTCGAGTTCAGAACGTT
TTTACTCACGGCCTGGGAGGAGCTCTGCTGCCACTCCTTTGCTCAGCGTC
CTTCTCGGCGTTGGCTCTGGTGCTGTACTCTTCCGTATCGCTCCTGCGAC
CAGCCTCGTCAGTCTTGCTATTATTTCAGCGGCGACGCTTCGCCCTCGGG
CGGTCTTCGATCTCTCGGTAGGTCCTCTACCTATGCTTTGCCGAATTCTT
CGGCGTGGCCCTCGCTCAAGGAAATTCTCTGAATCTTTTTACTTGTTGAG
TAAATCTCACGAGGAGGCAGGAGATATAAGTAGACATAAACATTGTACTT
ATTAATGGAGCATGGTCGAGTCCCGACCACCAACTCACATACCGAAGACT
AACACTCACGACGACTACTTGCGTCCACTCGCACTTGTCTTATTACAAGA
CGTACTCCAACCACACAAACTGAACACGTGTGTATGTAATATGTTGAGAC
AGGGGAGTATTAAAACCATTTCCCTGTGATGTAACTAATATACCAAGATC
AACTCCTACATATATGTAACGGTTTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig8868:2259..3286+

>mRNA_H-elongata_contig8868.16384.1 ID=mRNA_H-elongata_contig8868.16384.1|Name=mRNA_H-elongata_contig8868.16384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig8868:2259..3286+ (Himanthalia elongata Himel1 dioecious)
ATGATTGTTGTTCGAGCTCTTCCAGCTTCCGGTCCATTCCTGATTTTTCG
AGCTCTTCCAGCTCCGGGTCCATTCCTTCTTCGTTATGGCCCTGGGTGTT
TCCTTTATTTTAAATATTTTCTTCCGATCCTTCGGAAAAATACGGTCGAT
GGTTGGAAAGTCAAGCTGTACCAATTTTCCCAACAATCACGTGTGCCGCT
TCTCTCCTACTCGGCCATGCGGCATTTCTTCTTCTCTGCTATGCGTAGAA
ATGTCTCGAGTTCAGCATCTGTACATCCCTCGATCTGGTTTAAGAAACTC
TCGTCCATTTTTCGTATTTTCTCTTCTTTGACATCGATGCCTTCGAGTTC
AGAACGTTTTTACTCACGGCCTGGGAGGAGCTCTGCTGCCACTCCTTTGC
TCAGCGTCCTTCTCGGCGTTGGCTCTGGTGCTGTACTCTTCCGTATCGCT
CCTATGATTGTTGTTCGAGCTCTTCCAGCTTCCGGTCCATTCCTGATTTT
TCGAGCTCTTCCAGCTCCGGGTCCATTCCTTCTTCGTTATGGCCCTGGGT
GTTTCCTTTATTTTAAATATTTTCTTCCGATCCTTCGGAAAAATACGGTC
GATGGTTGGAAAGTCAAGCTGTACCAATTTTCCCAACAATCACGTGTGCC
GCTTCTCTCCTACTCGGCCATGCGGCATTTCTTCTTCTCTGCTATGCGTA
GAAATGTCTCGAGTTCAGCATCTGTACATCCCTCGATCTGGTTTAAGAAA
CTCTCGTCCATTTTTCGTATTTTCTCTTCTTTGACATCGATGCCTTCGAG
TTCAGAACGTTTTTACTCACGGCCTGGGAGGAGCTCTGCTGCCACTCCTT
TGCTCAGCGTCCTTCTCGGCGTTGGCTCTGGTGCTGTACTCTTCCGTATC
GCTCCTGAGGCAGGAGATATAAGTAGACATAAACATTGTACTTATTAAGA
GGCAGGAGATATAAGTAGACATAAACATTGTACTTATTAA
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