mRNA_H-elongata_contig88666.16380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88666.16380.1
Unique NamemRNA_H-elongata_contig88666.16380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.410e-41
Identity = 86/209 (41.15%), Postives = 132/209 (63.16%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
            FNV T A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G   I   GY + +SG  +G K ++G H VG+AIK+ I   V +    +ECIS  L+K R+ +     VTFVV YAPTE  ++T G     K      L+  +  V +R+++ +L+ ANARTG+   G  +A+  ++G  GRD++N NG+ +L  A DN+L+L NT+F
Sbjct:   14 FNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGCCDAK--IMGANGRDIMNNNGERLLELASDNQLSLTNTYF 220          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.880e-41
Identity = 88/210 (41.90%), Postives = 135/210 (64.29%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G   I   GY + +SG  +G K ++G H VG+AIK+ +   V +    +ECIS  L+K R+ +     VTF+V YAPTE  + TEG     K      L+  +  V +R+++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A DN+L+L NT+FR
Sbjct:  180 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 387          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.970e-40
Identity = 90/210 (42.86%), Postives = 136/210 (64.76%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTEQA--TEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNVRT A +G N IGH + ++++ CAA+ CD+IGLQ+T+R G   IT  GY + +SG  +G K ++G H VG+AIK+ + + V +    +ECIS  L+K R+ +     VTFVV YAPTE A  T G     K      L+  +  V +R+++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A DN+L+L+NT+FR
Sbjct:   95 FNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFR 302          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 5.310e-40
Identity = 84/210 (40.00%), Postives = 133/210 (63.33%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G   I   GY + +SG  +G K ++G H VG+AIK+ +   V +    +ECI   L+K R+ +     +TFVV YAPTE  + T G     K      L+  +  V + +++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A +N+L+L NT+FR
Sbjct:  153 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCCDAK--IMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFR 360          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.860e-39
Identity = 85/210 (40.48%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G   I   GY + +SG  +G K ++G H VG+ IK+ +   V +    +ECI   L+K R+ +     V FVV YAPTE  + T G     K      L+  +  V +R+++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A DN+L+L NT+FR
Sbjct:   86 FNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 293          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.100e-39
Identity = 87/210 (41.43%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNV T A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G   I   GY + +SG  +G K ++G H VG+AIK+ +   V +    +ECIS  L+K R+ +     VTFVV YAPTE  + T G     K      L+  +  V +R+++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A DN+L+L NT+FR
Sbjct:  662 FNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 869          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.100e-39
Identity = 86/208 (41.35%), Postives = 132/208 (63.46%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTF 600
            FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G   I   GY + +SG  +G K ++G H VG+AIK+ +   V +    +ECIS  L+K R+ +     VTFVV YAPTE  + T G     K      L+  +  V +R+++ +L++ANARTG+   G  +A+  ++G YGRD++N NG+ +L  A DN+L+L NT+
Sbjct:   91 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 296          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.960e-38
Identity = 84/210 (40.00%), Postives = 133/210 (63.33%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
            FNVRT A +G N IGH + ++++ C+A+GCD++GL +T+R+G   I   GY + +SG  +G K ++G H +G+AIK+ +   V +    +ECIS  L+K R+ +     VTFVV YAPTE  + T G     K      L+  +  V +R+++ +L++ANARTG+   G   A+  ++G YGRD++N +G+ +L  A DN+L+L NT+FR
Sbjct:   42 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDGYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCNAK--IMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFR 249          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.090e-38
Identity = 88/203 (43.35%), Postives = 125/203 (61.58%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSN--LVTFVVAYAPTEQATEGQKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
            +NVRT AVNG NG G  DS+L   A  G   +GLQ+ +R G ++  ASG+R++  G   G     G H VG+A+++ +      +    E +   L+  R  M  +   VTFV AYAPT+ AT   K      L++ V  + A+EY+F+L++ANA+TG  GG + E E T +GEYGR+ LNENG+L+L+FA DN+LA+LNTFF
Sbjct:  311 YNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKS---SQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG--GGIAGENEGT-MGEYGRNELNENGELLLTFATDNRLAVLNTFF 502          
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.740e-37
Identity = 88/203 (43.35%), Postives = 124/203 (61.08%), Query Frame = 1
Query:    1 FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSN--LVTFVVAYAPTEQATEGQKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
            +NVRT AVNG NG G  DS+L   A  G   +GLQ+ +R G ++  ASG+R++  G   G     G H VG+A+++ +      +    E +   L+  R  M  +   VTFV AYAPT+ AT   K      L++ V    A+EY+F+L++ANA+TG  GG + E E T +GEYGR+ LNENG+L+L+FA DN+LA+LNTFF
Sbjct:   24 YNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKS---SQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG--GGIAGENEGT-MGEYGRNELNENGELLLTFATDNRLAVLNTFF 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE5.410e-4141.15Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE7.880e-4141.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQH5_9PHAE1.970e-4042.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L660_9PHAE5.310e-4040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE2.860e-3940.48Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K1H7_9PHAE3.100e-3941.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB4_9PHAE8.100e-3941.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J6W7_9PHAE3.960e-3840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K319_9PHAE7.090e-3843.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE1.740e-3743.35Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88666contigH-elongata_contig88666:1999..2604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score69.3
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog13037.EHJ73827
KEGG rclassRC00063
KEGG koko:K15407
KEGG ReactionR03789,R10209
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,3SQX5@50557,420TT@6656,449FF@7088,KOG1075@1,KOG1075@2759
EC2.4.2.29
COG Functional cat.J
Best tax levelLepidoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.5192482-CDS-H-elongata_contig88666:1998..26041622931287.5192482-CDS-H-elongata_contig88666:1998..2604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88666 1999..2604 -
1691679774.5056393-CDS-H-elongata_contig88666:1998..26041691679774.5056393-CDS-H-elongata_contig88666:1998..2604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88666 1999..2604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88666.16380.1prot_H-elongata_contig88666.16380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88666 1999..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88666.16380.1

>prot_H-elongata_contig88666.16380.1 ID=prot_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGY
RLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKAR
ISMKSNLVTFVVAYAPTEQATEGQKAKHIATLNNTVSSVSAREYVFILIN
ANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTF
FR
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mRNA from alignment at H-elongata_contig88666:1999..2604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88666.16380.1 ID=mRNA_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig88666:1999..2604- (Himanthalia elongata Himel1 dioecious)
TTCAACGTTCGCACAGCAGCTGTTAACGGCGTCAACGGCATCGGTCATAT CGACTCCCTCCTTAGACCCTGTGCTGCAAGTGGTTGTGATATTATTGGAC TGCAGAAGACAAAACGGGACGGAGCATCTGACATAACTGCATCTGGATAC CGGCTCTACTTCAGTGGTGACTTCAGTGGAGCCAAAGGGGAAAAGGGGCA ACATAGGGTGGGACTAGCGATAAAGGATGAGATCGTTAACAAGGTCAGCA AGAACGACATTGCAATCGAGTGCATCAGCGCAAGTCTCCTGAAGGCTCGA ATATCGATGAAATCAAATTTAGTTACGTTTGTGGTAGCCTACGCTCCGAC TGAGCAAGCGACGGAGGGGCAGAAGGCCAAGCACATCGCAACCCTAAACA ACACCGTATCATCAGTGTCCGCTCGGGAATACGTCTTCATTTTGATCAAC GCGAATGCCAGGACAGGGAAAATGGGTGGGGGAAGCGAGGAAGCAGAAAG CACGGTATTGGGCGAATATGGCCGAGACGTACTCAACGAAAACGGCAAAC TAATGCTGAGTTTCGCAGAAGACAATAAGCTCGCTCTTCTGAACACCTTT TTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig88666:1999..2604-

>mRNA_H-elongata_contig88666.16380.1 ID=mRNA_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig88666:1999..2604- (Himanthalia elongata Himel1 dioecious)
TTCAACGTTCGCACAGCAGCTGTTAACGGCGTCAACGGCATCGGTCATAT
CGACTCCCTCCTTAGACCCTGTGCTGCAAGTGGTTGTGATATTATTGGAC
TGCAGAAGACAAAACGGGACGGAGCATCTGACATAACTGCATCTGGATAC
CGGCTCTACTTCAGTGGTGACTTCAGTGGAGCCAAAGGGGAAAAGGGGCA
ACATAGGGTGGGACTAGCGATAAAGGATGAGATCGTTAACAAGGTCAGCA
AGAACGACATTGCAATCGAGTGCATCAGCGCAAGTCTCCTGAAGGCTCGA
ATATCGATGAAATCAAATTTAGTTACGTTTGTGGTAGCCTACGCTCCGAC
TGAGCAAGCGACGGAGGGGCAGAAGGCCAAGCACATCGCAACCCTAAACA
ACACCGTATCATCAGTGTCCGCTCGGGAATACGTCTTCATTTTGATCAAC
GCGAATGCCAGGACAGGGAAAATGGGTGGGGGAAGCGAGGAAGCAGAAAG
CACGGTATTGGGCGAATATGGCCGAGACGTACTCAACGAAAACGGCAAAC
TAATGCTGAGTTTCGCAGAAGACAATAAGCTCGCTCTTCTGAACACCTTT
TTTCGCTTCAACGTTCGCACAGCAGCTGTTAACGGCGTCAACGGCATCGG
TCATATCGACTCCCTCCTTAGACCCTGTGCTGCAAGTGGTTGTGATATTA
TTGGACTGCAGAAGACAAAACGGGACGGAGCATCTGACATAACTGCATCT
GGATACCGGCTCTACTTCAGTGGTGACTTCAGTGGAGCCAAAGGGGAAAA
GGGGCAACATAGGGTGGGACTAGCGATAAAGGATGAGATCGTTAACAAGG
TCAGCAAGAACGACATTGCAATCGAGTGCATCAGCGCAAGTCTCCTGAAG
GCTCGAATATCGATGAAATCAAATTTAGTTACGTTTGTGGTAGCCTACGC
TCCGACTGAGCAAGCGACGGAGGGGCAGAAGGCCAAGCACATCGCAACCC
TAAACAACACCGTATCATCAGTGTCCGCTCGGGAATACGTCTTCATTTTG
ATCAACGCGAATGCCAGGACAGGGAAAATGGGTGGGGGAAGCGAGGAAGC
AGAAAGCACGGTATTGGGCGAATATGGCCGAGACGTACTCAACGAAAACG
GCAAACTAATGCTGAGTTTCGCAGAAGACAATAAGCTCGCTCTTCTGAAC
ACCTTTTTTCGC
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