mRNA_H-elongata_contig88606.16379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88606.16379.1
Unique NamemRNA_H-elongata_contig88606.16379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: D7G4F2_ECTSI (5'-3' exoribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.360e-55
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 318
            RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAA+L EE RQ+MKEMG+KVPPK+KPAWDSNIITPGT FMHKLS YLRFYVQDRVNRDKAWQNIKV
Sbjct:   87 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGVKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKV 192          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.780e-55
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 318
            RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAA+L EE RQ+MKEMGMKVPPK+KPAWDSNIITPGT FMHKLS YLRFYVQDRVNRDKAWQNIKV
Sbjct:   87 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGMKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKV 192          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7R9VJU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJU7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.490e-43
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RLF AVRPR+LLYLAIDGVAPRAKMNQQRSRRFRSAQEA E  ++ E+IR++M ++G KVPPK   AWDSN+ITPGT FM  LS ++RFY++ R++ D AW NIKV +
Sbjct:   43 RLFRAVRPRKLLYLAIDGVAPRAKMNQQRSRRFRSAQEAREGREVEEQIRKTMADVGQKVPPKGGDAWDSNVITPGTKFMLGLSDFIRFYIRKRISTDPAWSNIKVIF 150          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7S1UB78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB78_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.270e-42
Identity = 73/108 (67.59%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RLF+AVRPR+LL+LAIDGVAPRAKMNQQRSRRF+S +E  E  +  EE+RQ M  MG+KVPPK+KP WDSN+ITPGT FM KL+I+LR+Y+ DR N++ AW+NIKV +
Sbjct:  100 RLFAAVRPRKLLFLAIDGVAPRAKMNQQRSRRFKSVKEMREGQEAMEEVRQDMMAMGLKVPPKAKPGWDSNVITPGTQFMDKLAIFLRYYILDRCNKNPAWKNIKVVF 207          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A8K1CPD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPD8_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 5.450e-38
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RLF+AVRPRR+LYLAIDGVAPRAKMNQQR+RRFRSAQEAE+  ++ +E    M+ MG KVP K    WDSN+ITPGT FM KL+ Y+RFY++DR+N + AW++IKV +
Sbjct:   89 RLFAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRSAQEAEQRKEIEKEALDYMRAMGHKVPEKQSEGWDSNVITPGTKFMSKLAKYMRFYIRDRINNNPAWKSIKVIF 196          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A5D6XP65_9STRA (5'-3' exoribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP65_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.570e-37
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RL +AVRPRR+LYLAIDGVAPRAKMNQQR+RRFR+AQEAE+  ++ +E  + M+ +G KVP K + AWDSN+ITPGT FM KL+ YLRFYV+DR+N + AW++IKV +
Sbjct:   69 RLVAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRAAQEAEQRQEVEKEALEYMRALGHKVPGKQEKAWDSNVITPGTKFMSKLAKYLRFYVRDRINNNPAWKSIKVIF 176          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7S0A1E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A1E8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.800e-37
Identity = 69/108 (63.89%), Postives = 87/108 (80.56%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RLF A RPR+LLYLAIDGVAPRAKMNQQRSRRFRSAQEA+E  ++ + ++++M   GM +P  S  AWDSN+ITPGT FM KLS YL+FY++ R++ DKAW+ IKV +
Sbjct:   89 RLFRAARPRKLLYLAIDGVAPRAKMNQQRSRRFRSAQEADEKKEIEDRVKKNMSNEGMSLPSSSGDAWDSNVITPGTKFMLKLSEYLKFYIRKRMSEDKAWKTIKVIF 196          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A1W0A9W7_9STRA (5'-3' exoribonuclease (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9W7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.890e-37
Identity = 71/108 (65.74%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RL + VRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQ+A+E  ++ EE R+ MK MG ++PPK+ P WDSN+ITPGT FM KL+ ++RFYV+DR+N   AW++IKV +
Sbjct:  856 RLVACVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQDAKERLEIEEEAREYMKLMGHEIPPKTTP-WDSNVITPGTKFMAKLAKFMRFYVRDRINSCPAWKDIKVLF 962          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A3R7HZP6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HZP6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.590e-37
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 318
            RL +AVRPRR+LYLAIDGVAPRAKMNQQR+RRFR+AQEAE+  ++ +E  + M  MG KVP K + AWDSN+ITPGT FM KL+ YLRFY++DRVN + AW++IK+
Sbjct:   89 RLVAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRAAQEAEQRMEVEKEALEYMSAMGHKVPSKQEKAWDSNVITPGTKFMAKLAKYLRFYIRDRVNNNAAWKSIKI 194          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A3R6WQE1_9STRA (5'-3' exoribonuclease n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WQE1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.010e-37
Identity = 71/108 (65.74%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 324
            RL + VRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQEA++ A++ +E+R+ M+ +G K PPK  P WDSN+ITPGT FM KLS Y+RFYV+DR+N   AW++ KV +
Sbjct:   89 RLVACVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAKQHAEVDKEVREYMETLGQKPPPKQTP-WDSNVITPGTKFMAKLSKYMRFYVRDRMNNCPAWKHFKVVF 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4F2_ECTSI2.360e-5592.455'-3' exoribonuclease n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JF35_9PHAE5.780e-5593.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VJU7_9STRA1.490e-4367.59Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1UB78_9STRA1.270e-4267.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8K1CPD8_PYTOL5.450e-3864.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XP65_9STRA2.570e-3764.815'-3' exoribonuclease n=1 Tax=Pythium brassicum Ta... [more]
A0A7S0A1E8_9STRA4.800e-3763.89Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
A0A1W0A9W7_9STRA4.890e-3765.745'-3' exoribonuclease (Fragment) n=1 Tax=Thraustot... [more]
A0A3R7HZP6_9STRA6.590e-3766.04Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3R6WQE1_9STRA8.010e-3765.745'-3' exoribonuclease n=1 Tax=Aphanomyces invadans... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88606contigH-elongata_contig88606:375..2092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.7e-47
Seed eggNOG ortholog2880.D7G4F2
KEGG koko:K12619
KEGG Pathwayko03008,ko03018,map03008,map03018
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2044@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.4515605-CDS-H-elongata_contig88606:374..5361622931287.4515605-CDS-H-elongata_contig88606:374..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88606 375..536 -
1691679774.4781191-CDS-H-elongata_contig88606:374..5361691679774.4781191-CDS-H-elongata_contig88606:374..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88606 375..536 -
1622931287.4708636-CDS-H-elongata_contig88606:1915..20921622931287.4708636-CDS-H-elongata_contig88606:1915..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88606 1916..2092 -
1691679774.4926693-CDS-H-elongata_contig88606:1915..20921691679774.4926693-CDS-H-elongata_contig88606:1915..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88606 1916..2092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88606.16379.1prot_H-elongata_contig88606.16379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88606 375..2092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88606.16379.1

>prot_H-elongata_contig88606.16379.1 ID=prot_H-elongata_contig88606.16379.1|Name=mRNA_H-elongata_contig88606.16379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIR
QSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKA
WQNIKVCYRQPL*
back to top

mRNA from alignment at H-elongata_contig88606:375..2092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88606.16379.1 ID=mRNA_H-elongata_contig88606.16379.1|Name=mRNA_H-elongata_contig88606.16379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1718bp|location=Sequence derived from alignment at H-elongata_contig88606:375..2092- (Himanthalia elongata Himel1 dioecious)
AGGCTTTTCTCGGCTGTGCGACCCAGACGCTTGCTTTACCTAGCCATCGA CGGAGTTGCGCCAAGGGCGAAGATGAACCAACAGCGGTCCAGGAGGTTTC GATCAGCCCAGGAGGCCGAGGAGGCCGCAGACCTTCGAGAAGAAATCCGC CAGTCCATGAAAGAAATGGGGATGAAGGTAGGTAAATAGTACTAGTAAAT TGTTCAACGTGGTGCTCCAGGTTTTGCGTTAATTTGTACGCGCGCCCCCC TCCCCCTTGCCCCGGCGAAGGCGAAGGCTGATTTGATCGCCTTACGGTTT AAGTTTCTGCTCTTCTCTTTCCTCTATCCTTCTGTGTGTGTGTCTTTTGG TTTTTTAATCGCCTACCGCCTACCGATCATGACATTAATAGTGTTCCTCG ACCGAGGAGCCACACAAGTAACCGCGCACCGTTGCAAGTTGGACTCTTAG CTAAGATAAGGATGACTGGATTTTGGTTTCTGTGTGAGGAAGGCGGAAGG GGGAAAGGGTATAGCAGACGTTTAGCCCTACCAGGTACCAAGGTAGGTTT TACCGATAGTCAAACGTCATCTTTACGCCATTGCGTGACCTGATGAATTC AGGATTTGTCCGATATTCAGGATTTTTCCGATGACGGTTGATGGTAGATA TAGATTGACACCGTCGCGGAAAGCGGGAGGAACGAGAGGATCCCGGGAGT ACGCACCATATTCAGTCTGGGTTGAGAAAATGAGCAGGCTGACGCGGGAC AGGCGAACCCGTCTCGCGAAACCAAATTCTCAGGCGCGAACGGGGACAGA AACAAAAAAAACCCCTGTTCAGCTGACCACAAGCAGTAGGCAACCATACC CGGTTGATCCATCCTATAGGCTACATAGAATATGCGATGAACACACACAA GATGGAGGTGGAGGGATGCTGGACTGACTGAGCTTGCGTCGCGATAAAAA TTCGTCCATAGGCGTGTTTGAACCGGTGAAATATTGGGTAGGCAGGATGA GGAGCCTTGCGGTAATAATAACATAATACTAGAACATAAAGGTTGCTGTT GTTGTTTAAGCACAAGCTCAGAGCAAGCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCAAAAAAACACAGCGGGCCCCCTTTTTTTTTCTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTGGTCNNNNNNNNNNGTAATAAAAACAAAATA ACAAACCAAAACGGTTCTTGTTTTTTTTTTAACACCACCTCAGAGACCGC CCCCCCCCCCCCCCCCCCAAACCTGCCAAACGGAAGCAGCGTGCCGCCCT TTTTTTCTCTCTATTTTTCTTTTCTTTTTTGTTTTATCGGCAGGACGAAA AACGATTAGGTATGAGATAACACCAGCATATAGAGATCGGGGAAAGGGGG GCGAGGAGAGGTTTTCCTTCACCTTTCGTTTTGTTATTTTTTCGGAGCGG GGGTTGGAGGGGGGGGGACGTCGGGTTATATGTTCGTCTTAGCTTACTAT TATTTTTTCATTTTATTTTACATCTGTTGGTACGCCTTTTTTTCTCAAAA ACCCAGGTGCCCCCCAAGTCGAAGCCTGCCTGGGACAGCAACATCATCAC CCCTGGCACGCTGTTCATGCACAAGCTTTCCATCTACCTGCGCTTCTACG TCCAAGACAGGGTCAATCGTGACAAGGCCTGGCAAAACATCAAGGTGTGC TACCGCCAACCGCTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88606:375..2092-

>mRNA_H-elongata_contig88606.16379.1 ID=mRNA_H-elongata_contig88606.16379.1|Name=mRNA_H-elongata_contig88606.16379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig88606:375..2092- (Himanthalia elongata Himel1 dioecious)
AGGCTTTTCTCGGCTGTGCGACCCAGACGCTTGCTTTACCTAGCCATCGA
CGGAGTTGCGCCAAGGGCGAAGATGAACCAACAGCGGTCCAGGAGGTTTC
GATCAGCCCAGGAGGCCGAGGAGGCCGCAGACCTTCGAGAAGAAATCCGC
CAGTCCATGAAAGAAATGGGGATGAAGAGGCTTTTCTCGGCTGTGCGACC
CAGACGCTTGCTTTACCTAGCCATCGACGGAGTTGCGCCAAGGGCGAAGA
TGAACCAACAGCGGTCCAGGAGGTTTCGATCAGCCCAGGAGGCCGAGGAG
GCCGCAGACCTTCGAGAAGAAATCCGCCAGTCCATGAAAGAAATGGGGAT
GAAGGTGCCCCCCAAGTCGAAGCCTGCCTGGGACAGCAACATCATCACCC
CTGGCACGCTGTTCATGCACAAGCTTTCCATCTACCTGCGCTTCTACGTC
CAAGACAGGGTCAATCGTGACAAGGCCTGGCAAAACATCAAGGTGTGCTA
CCGCCAACCGCTGTAAGTGCCCCCCAAGTCGAAGCCTGCCTGGGACAGCA
ACATCATCACCCCTGGCACGCTGTTCATGCACAAGCTTTCCATCTACCTG
CGCTTCTACGTCCAAGACAGGGTCAATCGTGACAAGGCCTGGCAAAACAT
CAAGGTGTGCTACCGCCAACCGCTGTAA
back to top