mRNA_H-elongata_contig88458.16370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88458.16370.1
Unique NamemRNA_H-elongata_contig88458.16370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: D7FIS1_ECTSI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.420e-46
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            +ALLS+WDGVVMGGGV IS+HG+FRVATETSLFAMPETVIG+FPDVG A+ LSRL GGLGQYLGLTGARLRG+DLL+CGLATHLVP DR
Sbjct:  125 QALLSLWDGVVMGGGVGISVHGTFRVATETSLFAMPETVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDR 213
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A7S2ECJ1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECJ1_TRICV)

HSP 1 Score: 134 bits (338), Expect = 6.430e-37
Identity = 58/86 (67.44%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   10 LSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            +S+WDGVVMGGGV IS+HG +RVAT+ +LFAMPET IG+FPDVG  ++L RL+GG+G+Y+ LTGARLR +DLLY G+ATH VP++R
Sbjct:   37 VSLWDGVVMGGGVGISVHGKYRVATDNTLFAMPETAIGLFPDVGGTWWLPRLSGGIGRYVALTGARLRAEDLLYAGIATHYVPSER 122
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A7S4QIR7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QIR7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.090e-36
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            K  +S+WDG+VMGGGV +SIHG +R+ATE +LFAMPET IG+FPDVG  Y+LSRL GGLG+Y+ LTG RL+ DDLLY G+ATH VP+++
Sbjct:  120 KPQVSLWDGIVMGGGVGLSIHGKYRIATENTLFAMPETGIGLFPDVGGMYWLSRLKGGLGKYIALTGCRLKADDLLYAGIATHFVPSNK 208
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A7S3XY16_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY16_HETAK)

HSP 1 Score: 133 bits (335), Expect = 2.520e-36
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   10 LSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            +SIWDG+VMGGGV +S+HG+FRVATE +LFAMPET IG+ PDVG ++FL RL GGLG YL LTGAR    DLLY G+ATH VP DR
Sbjct:   36 ISIWDGIVMGGGVGVSVHGNFRVATENTLFAMPETAIGLVPDVGGSWFLPRLPGGLGAYLALTGARCNAHDLLYSGIATHAVPADR 121
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A178UPH4_ARATH (CHY1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178UPH4_ARATH)

HSP 1 Score: 128 bits (322), Expect = 1.150e-35
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPT 261
            KA +SI +G+VMGGG  +S+HG FR+ATE ++FAMPET +G+FPDVGA+YFLSRL G  G+Y+GLTGARL G ++L CGLATH VP+
Sbjct:  106 KAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPS 192
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A7S2KI54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KI54_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.760e-35
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   10 LSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            +SIWDGVVMGGG  IS+HG +RVATE +LFAMPET IG+FPDVG+ Y+L RL GGLG Y+ LTGARL+ DDL+Y GLATH VP+ +
Sbjct:  169 ISIWDGVVMGGGAGISVHGKYRVATENTLFAMPETGIGLFPDVGSMYWLPRLEGGLGTYIALTGARLKADDLMYAGLATHYVPSSK 254
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A1J3GLL5_NOCCA (3-hydroxyisobutyryl-CoA hydrolase 1 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GLL5_NOCCA)

HSP 1 Score: 127 bits (319), Expect = 1.860e-35
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPT 261
            K  +SI +G+VMGGG  + IHG FRVATE ++FAMPET IG+FPDVGA+YFLSRL+G  G+Y+GLTGARL G ++L CGLATH VP+
Sbjct:   59 KPQVSIMNGIVMGGGAGVCIHGRFRVATENTVFAMPETAIGLFPDVGASYFLSRLSGFFGEYVGLTGARLDGAEMLACGLATHFVPS 145
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: UPI000CE19705 (probable 3-hydroxyisobutyryl-CoA hydrolase 3 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE19705)

HSP 1 Score: 128 bits (322), Expect = 2.510e-35
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            K  +SI +G+VMGGG   SIHG FRVATE S+FAMPETV+G FPDVGA+YFL RL G  G+YLGLTG RL G ++L CGLATH VP++R
Sbjct:   14 KPQVSILNGIVMGGGAGASIHGRFRVATENSVFAMPETVLGFFPDVGASYFLPRLPGFFGEYLGLTGTRLDGAEMLVCGLATHFVPSER 102
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: A0A540KA86_MALBA (ECH_2 domain-containing protein n=2 Tax=Malus TaxID=3749 RepID=A0A540KA86_MALBA)

HSP 1 Score: 127 bits (319), Expect = 2.920e-35
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    4 ALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPT 261
            A +SI +G+ MGGGV ISIHG FRVAT+ S+FAMPET +G+FPDVGA+YFLSRL G  G+YLGLTGARL G ++L CG ATH VP+
Sbjct:   37 AAVSILNGIAMGGGVGISIHGKFRVATDNSVFAMPETALGLFPDVGASYFLSRLPGFFGEYLGLTGARLNGAEMLACGRATHYVPS 122
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BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Match: R0GU36_9BRAS (ECH_2 domain-containing protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0GU36_9BRAS)

HSP 1 Score: 130 bits (327), Expect = 3.300e-35
Identity = 57/89 (64.04%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAYFLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR 267
            KA +SI +G+VMGGG  +S+HG FR+ATE+++FAMPET +G+FPD+GA+YFLSRL G  G+Y+GLTGARL G ++L CGLATH VP+ R
Sbjct:   79 KAQISILNGIVMGGGAGVSVHGRFRIATESTVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSKR 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88458.16370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS1_ECTSI1.420e-4685.39Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A7S2ECJ1_TRICV6.430e-3767.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4QIR7_9STRA1.090e-3666.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XY16_HETAK2.520e-3669.77Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A178UPH4_ARATH1.150e-3565.52CHY1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID... [more]
A0A7S2KI54_9STRA1.760e-3569.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1J3GLL5_NOCCA1.860e-3566.673-hydroxyisobutyryl-CoA hydrolase 1 (Fragment) n=3... [more]
UPI000CE197052.510e-3567.42probable 3-hydroxyisobutyryl-CoA hydrolase 3 n=1 T... [more]
A0A540KA86_MALBA2.920e-3568.60ECH_2 domain-containing protein n=2 Tax=Malus TaxI... [more]
R0GU36_9BRAS3.300e-3564.04ECH_2 domain-containing protein n=1 Tax=Capsella r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88458contigH-elongata_contig88458:748..2555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.2e-38
Seed eggNOG ortholog2880.D7FIS1
KEGG rclassRC00004,RC00014,RC00137
KEGG koko:K05605
KEGG ReactionR03158,R05064
KEGG Pathwayko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG ModuleM00013
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016020,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGsCOG1024@1,KOG1684@2759
Ec32 ortholog descriptionEnoyl-CoA hydratase/isomerase family protein
Ec32 orthologEc-20_003150.1
EC3.1.2.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931286.4415991-CDS-H-elongata_contig88458:747..9021622931286.4415991-CDS-H-elongata_contig88458:747..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88458 748..902 -
1691679774.0208194-CDS-H-elongata_contig88458:747..9021691679774.0208194-CDS-H-elongata_contig88458:747..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88458 748..902 -
1622931286.465094-CDS-H-elongata_contig88458:2440..25551622931286.465094-CDS-H-elongata_contig88458:2440..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88458 2441..2555 -
1691679774.0348046-CDS-H-elongata_contig88458:2440..25551691679774.0348046-CDS-H-elongata_contig88458:2440..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88458 2441..2555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88458.16370.1prot_H-elongata_contig88458.16370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88458 748..2555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88458.16370.1

>prot_H-elongata_contig88458.16370.1 ID=prot_H-elongata_contig88458.16370.1|Name=mRNA_H-elongata_contig88458.16370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
KALLSIWDGVVMGGGVRISIHGSFRVATETSLFAMPETVIGIFPDVGAAY
FLSRLTGGLGQYLGLTGARLRGDDLLYCGLATHLVPTDR*
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mRNA from alignment at H-elongata_contig88458:748..2555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88458.16370.1 ID=mRNA_H-elongata_contig88458.16370.1|Name=mRNA_H-elongata_contig88458.16370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1808bp|location=Sequence derived from alignment at H-elongata_contig88458:748..2555- (Himanthalia elongata Himel1 dioecious)
AAGGCGCTTTTGTCCATCTGGGACGGTGTCGTGATGGGTGGTGGTGTCCG
GATCTCCATCCACGGGAGCTTTCGAGTGGCGACGGAGACCTCGCTTTTCG
CCATGCCGGAAACAGGTAACGTCGCTTGCATGGGCTGCAACGCTGGCGAC
TGATGGAGCATGAGAGAGTTAGTTCATGTAATTTGTCCTGTGGGCTCAGA
GATCTCGGGTTGGAGAGGCTCGTCTCTCTCCCTAAAAGGATGAAACGCAT
TATATTCGGTAGGATGACACCTGCTGGACAACGGGCTGTTGGAAAGCCCT
ACAGCGATGACACCTACATCTATATATACCCGTGAGAGCACCCCGCCAGG
AGTAACCATTAGCGGATTGTATCCTGAGTTTATCAAACGTCTGCCGTTGT
CACTATGTGGAGTACATGCGGTGCTTATATGATAGTATACTATAGTATAC
TATACTATACTATACTATACTATACTATATCAGTACTATACTATACTATA
CTATACCAGTACTATACTATACTATACTATGCTATACTATGCTATACTAT
GCTATACTATACTATACTATACTATACTATATTATACTATACTATACTAT
ACTATACTATACTATATACTATACTATACTATACTATATACTATACTATA
CTATACTATACTATACTATACTATACTATACTATACTATATACTATACTA
TACTATATACTATACTATACTATACTATACTATACTATACTATACTATAC
TATACTATACTATATACTATACTATACTATACTATACCAGTACTATACTC
CACTATACTATACTATACCAGTACTATACTATGCTATACTATGCTATACT
ATACTATACTATACTATACTATACTATACTATACTGCTATGCTATACTAT
ACTATACTGCTATACTATACTATACTATACTATACTATAGTTCAGCATAG
TATAGTGTAGTATATTATATTATATTATGCGTTCGCTCGAAGATGAAGTC
CTTTACGGTACTGTACTTGGGAGTATAGTATAGTACTGGTATAGTACAGT
ACAGGAACGATAACGATAGCGCCCGTTGAACGCGGAAAATTTGATTACCC
GATGTATCCGGTGTTCCAATTAAACCCATGGCATGTCCGTTTTAGGGTAG
CAATCGCAAGGATTGTGCCTAAGAGCTGGTATCAGTCGTGTGAAGCGCAG
TCTAGTCGGCGAGAACCCGGTATGGCATGACATTACATATCGCTCCGTCC
CGGCAGTGTTGAGATACGACATTCGTTTAACATACTGGAAGTACCCCCTA
ATGGTCCAGCAACTAAGACATAAAACACTTGAGTACCTGGCCCCCTTACG
GAAACAAGCACTCGCGTCTTCGAAATTACCGATATGCAATTGACGCGAGG
GGTGCTCTTTAGTCGGGAGGCGTACTGAAGTGTTTCATGCATTAAGTGCT
GAACCATTGGAGGGGAGATGGGGGGGGGGTACTTCTAGCATGTTAAACGA
ATGTCGTATCCTAGCGAAAGCGGTACACGTGCGTCTTGCATGGCTGCCGG
TGTCCGTGAGGGTTCTTAACACGGTGACCACGAGATCGTTAAGAGCATCG
GGAGCTGGTGTAAGACGCCATCCACAACACCCCGTCCTGTATTACCTCGG
CAGTGATCGGCATCTTTCCCGACGTTGGCGCGGCGTACTTTCTGTCGAGG
CTTACCGGAGGGCTGGGGCAGTACCTGGGACTCACCGGGGCGAGGCTGAG
GGGAGACGACTTGCTTTACTGTGGACTGGCCACCCATCTGGTGCCGACGG
ACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig88458:748..2555-

>mRNA_H-elongata_contig88458.16370.1 ID=mRNA_H-elongata_contig88458.16370.1|Name=mRNA_H-elongata_contig88458.16370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig88458:748..2555- (Himanthalia elongata Himel1 dioecious)
AAGGCGCTTTTGTCCATCTGGGACGGTGTCGTGATGGGTGGTGGTGTCCG
GATCTCCATCCACGGGAGCTTTCGAGTGGCGACGGAGACCTCGCTTTTCG
CCATGCCGGAAACAGAAGGCGCTTTTGTCCATCTGGGACGGTGTCGTGAT
GGGTGGTGGTGTCCGGATCTCCATCCACGGGAGCTTTCGAGTGGCGACGG
AGACCTCGCTTTTCGCCATGCCGGAAACAGTGATCGGCATCTTTCCCGAC
GTTGGCGCGGCGTACTTTCTGTCGAGGCTTACCGGAGGGCTGGGGCAGTA
CCTGGGACTCACCGGGGCGAGGCTGAGGGGAGACGACTTGCTTTACTGTG
GACTGGCCACCCATCTGGTGCCGACGGACAGGTGATGATCGGCATCTTTC
CCGACGTTGGCGCGGCGTACTTTCTGTCGAGGCTTACCGGAGGGCTGGGG
CAGTACCTGGGACTCACCGGGGCGAGGCTGAGGGGAGACGACTTGCTTTA
CTGTGGACTGGCCACCCATCTGGTGCCGACGGACAGGTGA
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