mRNA_H-elongata_contig88425.16369.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88425.16369.1
Unique NamemRNA_H-elongata_contig88425.16369.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.650e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct:  186 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDF 252
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 70.9 bits (172), Expect = 7.910e-13
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFE 186
            DN+  I +A+NR +S+R +H+DIKHH +R+ VD GV+ + YV + EQ+ADILTK +D ++FE
Sbjct:  273 DNQSCIHLARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334
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BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.090e-13
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 204
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  313 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 204
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  423 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 490
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct:  888 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct: 1119 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDF 1185
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct: 1155 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 1221
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct: 1329 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDF 1395
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.730e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 201
            DNEGAI +A+N  SS R++H+D++HH +R+  + GV+ I +V S +QHADILTK++    FE H  F
Sbjct:  168 DNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALPRSIFEVHRDF 234
[Close]
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 DNEGAIKMAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEK 189
            DN  AI ++KN     RT+H+DI+HH +RD V+ GVV +E++ + EQ ADI TK++D   FEK
Sbjct:   14 DNLSAINISKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEK 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCG6_9PHAE5.650e-1349.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A9YPH4_LYGHE7.910e-1351.61Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A6H5JRE7_9PHAE9.090e-1348.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.030e-1248.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.410e-1249.25Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3I1_9PHAE1.410e-1249.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.410e-1249.25Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KZH7_9PHAE1.410e-1249.25Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8M4_9PHAE1.730e-1249.25Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A2K3K827_TRIPR2.900e-1249.21Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88425contigH-elongata_contig88425:1028..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931286.3849082-UTR-H-elongata_contig88425:1027..10481622931286.3849082-UTR-H-elongata_contig88425:1027..1048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88425 1028..1048 +
1691679774.0021312-UTR-H-elongata_contig88425:1027..10481691679774.0021312-UTR-H-elongata_contig88425:1027..1048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88425 1028..1048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931286.3992276-CDS-H-elongata_contig88425:1048..12311622931286.3992276-CDS-H-elongata_contig88425:1048..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88425 1049..1231 +
1691679774.0109081-CDS-H-elongata_contig88425:1048..12311691679774.0109081-CDS-H-elongata_contig88425:1048..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88425 1049..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88425.16369.1prot_H-elongata_contig88425.16369.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88425 1049..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88425.16369.1

>prot_H-elongata_contig88425.16369.1 ID=prot_H-elongata_contig88425.16369.1|Name=mRNA_H-elongata_contig88425.16369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVD
VKTFEKHAKFL
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mRNA from alignment at H-elongata_contig88425:1028..1231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88425.16369.1 ID=mRNA_H-elongata_contig88425.16369.1|Name=mRNA_H-elongata_contig88425.16369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig88425:1028..1231+ (Himanthalia elongata Himel1 dioecious)
GACAACGAAGGCGCAATCAAGATGGCGAAAAACCGCTTCAGCAGTCGACG
AACAAGGCACGTGGACATCAAGCATCACAATGTCCGCGACGCGGTCGATG
GGGGGGTAGTTCACATAGAATACGTTCTGTCCTGGGAACAGCACGCCGAC
ATCCTCACGAAGTCCGTAGACGTCAAGACATTTGAGAAGCACGCGAAATT
CCTT
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Coding sequence (CDS) from alignment at H-elongata_contig88425:1028..1231+

>mRNA_H-elongata_contig88425.16369.1 ID=mRNA_H-elongata_contig88425.16369.1|Name=mRNA_H-elongata_contig88425.16369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig88425:1028..1231+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAAAACCGCTTCAGCAGTCGACGAACAAGGCACGTGGACATCAA
GCATCACAATGTCCGCGACGCGGTCGATGGGGGGGTAGTTCACATAGAAT
ACGTTCTGTCCTGGGAACAGCACGCCGACATCCTCACGAAGTCCGTAGAC
GTCAAGACATTTGAGAAGCACGCGAAATTCCTTATGGCGAAAAACCGCTT
CAGCAGTCGACGAACAAGGCACGTGGACATCAAGCATCACAATGTCCGCG
ACGCGGTCGATGGGGGGGTAGTTCACATAGAATACGTTCTGTCCTGGGAA
CAGCACGCCGACATCCTCACGAAGTCCGTAGACGTCAAGACATTTGAGAA
GCACGCGAAATTCCTT
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