mRNA_H-elongata_contig883.16358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig883.16358.1
Unique NamemRNA_H-elongata_contig883.16358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 862 bits (2227), Expect = 2.230e-290
Identity = 552/1023 (53.96%), Postives = 630/1023 (61.58%), Query Frame = 2 
Query:  437 TTMPSGPSTLPLELSDISDDRREQLELRRRREMVRLEEENEARAGTGNFRWSPIAMIPAHLCVLIFLIFLLEKLEDNIDWPWAAVLSPLWITDTLFIVVKSKELRKIMRTMVHAPSEVHALFPPVRGIIDHLGVAAAKVTLAYRLEGKVDWSLLLLFTPMWLCVLLSGALRCMTPPPPQVMGEQQIVLHRMGSFMTGLFHLVARGAQPMLIVLKVDGQVDGPWASVFIPLWMFMGAIAVGGFALCCCAPMVSRGVIPEIRPLLIRGMRLCSVGTFSLAICALLFLVFLTLELDGNENMPPRTILAPLIALYAMILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNAVAG----TPVFG---DVGPGEGARGNE--GFAQPAAEGRRRPRGRPS--------MTPTILMRESSTLFRRASVSFCRRLGEANSAAVDSDVISFE-------LWDWSLR--RSSSRNSD-----EVGGTSGGVERGPRRSSRSFH---DFLRHPPGPNSMGGQRFTAAEAGTANREKARSRFKASTERQRAGAEKEASPRQRGSGEVASKASPEASECFCKDERHDRALLPGDSGTHSVTDSYDLNSYGSYVDSDEENHEVGLSIDGDEDEDGQD--ELGVGLRGSSSHSAXXXXXXXXXXXXXXXXXXSQHSMTTSTSQSPEILLAFGSTHGAAAYSLHGG-GSGHGM-------------------------SGNRWSVGREXXXXXXXXXXXAPRGGIMPRRVSWPSGMSTADFGMDSGNGXXXXXXXXXXXXXIEAGLGEGXXAGG----------------HRQTTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVLM------FGGVLTVPTGGSLGAPLPSGGSGNAQTPDTHQPASLGMSGPPPAPRVAGXXXXXXXXXXXXXXXXXRGVVGSLRRFAE-PDVGRALSAGVSAQGGV-TQPSRGAGDACGTSAAAQGEAPPPPARDPT---RRELEAQGLSEEGGWLDPV 3238
            TT  +  + LPLEL DISD+RREQLELRR+REM R   + E+R+GTG+FRWSPIAMIPAHLCVL+FL+FLLEKLE  I WPWAAVLSPLWITD +FIV+KSKELRKI+RT VH PSE +ALFPP+ GIIDHLGVAAAKVTLAYRLEGKVDWSLLLLFTPMW CVLL+G LRC+TPP PQV+ E    LHR G+F TGLFHLVARGAQP+LIVLKVDGQ++GPW+SVFIPLWMFMGAIA+GG ALCCCAP VSRGVIPEIRPLLIRGM LCSVGTFSLA CALLFLVFLTLELD NEN  PRTILAPLIALYA+ILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPN   G    +  FG   DV  G G RG+   G A+                      M PTILMRESS LFRRAS SFCRRLGEA+ + ++ DV +FE       L DW  R  R  SR+SD     + GG+    ER P+RSSRSFH   D   H  G    GGQRFTAA  G+++RE    RF  S+ RQ AGAEKE SPR RG     SK +PE       D+RHD+ LLPGDSGTHSVTDSYDLNS+GS+VDSDE++HEVGLSIDGDE+++ +D       + GSS H                       S+  +T++ PEILL FGS HGAAA+SLHGG GSGHG+                         S +RWS  R                G MPRR+SWP  +S A  G D                  EAG G G   GG                   +TCYICC R+ADAV+MECGHGG+CF CA  LA++PP  CPVCR  IQEV        FG V+ VP       P   G    A       P   G+ G    P   G                  G  G L      P    A ++ +   GGV  Q S  A     +S A +G +P  P   P    R  LEAQG+ +E  WLDPV
Sbjct:    3 TTTRAATTILPLELGDISDERREQLELRRQREMAR---QQESRSGTGSFRWSPIAMIPAHLCVLVFLVFLLEKLEGGIGWPWAAVLSPLWITDAVFIVIKSKELRKILRTTVHVPSETYALFPPLGGIIDHLGVAAAKVTLAYRLEGKVDWSLLLLFTPMWACVLLAGTLRCITPPHPQVIAEHAS-LHRAGAFFTGLFHLVARGAQPVLIVLKVDGQLEGPWSSVFIPLWMFMGAIALGGSALCCCAPTVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLELDNNENFSPRTILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGGGGMDASSTAFGGVDDVEAGRGVRGSPPIGGAEXXXXXXXXXXXXXXXXXXXXXVMAPTILMRESSMLFRRASASFCRRLGEADGSLMNPDVTAFEVRFRAVELADWGRRGGRFRSRDSDIAAIDDGGGSEERGERVPQRSSRSFHVLQDCFPHARGAVRRGGQRFTAAVTGSSSRE-GHERFSVSSGRQLAGAEKEGSPRPRGEDGATSKRTPE-------DDRHDQCLLPGDSGTHSVTDSYDLNSFGSFVDSDEDSHEVGLSIDGDEEDEPRDGXXXXXAIDGSSFHE----------------------SLPATTTEPPEILLGFGSAHGAAAFSLHGGSGSGHGLCHGSXXXXXXXXXXXXXXXXXXLATSRHRWSAERGTSSRRGAGSSIHGGAGGMPRRLSWPGELSLASVGGDE------VDVAAVTASDAEAGRG-GVATGGSSGPLXXXXXXXXXXXREHSTCYICCERRADAVMMECGHGGVCFTCATTLADSPPHLCPVCRKVIQEVFKLHEIREFGRVVVVP-------PASGGEVAVATAATAATPRRGGIGGELKVPESEGDPPTASNAAV--------GAAGLLTPSTSVPAPPSASASSMPVPGGVYVQRSGDAPAGVASSTARRGFSPSGPVSSPESGPRNTLEAQGMCDESNWLDPV 969
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S2USS3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USS3_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.280e-46
Identity = 114/309 (36.89%), Postives = 169/309 (54.69%), Query Frame = 2 
Query:  569 GTGNFRWSPIAMIP---AHLCVLIFLIFLLEKLEDNIDWPWAAVLSPLWITDTLFIVVKSKELRKIMRTMVHAPSE-----VHALFPPVRGIIDHLGVAAAKVTLAYRLE---GKVDWSLLLLFTPMWLCVLLSGALRCMTPPPPQVMGE--QQIVLHRMGSFMTGLFHLVARGAQPMLIVLKVDGQVDGPWASVFIPLWMFMGAIAVGGFALCCCAPMVSRGVIP--EIRPLLIRGMRLCSVGTFSLAICALLFLVFLTLELDGNENMPPRT-ILAPLIALYAMILVFLPLLLLVTRHYVR-TMRTAE 1444
            G+ N    P+ M P    HL  L+F+I +L KLE+ +DW WAAV +PLW TD  F+ +K  E+++    +     +     + A+  P  G+++H  VA  K+ L   LE   G   + L LLF P+W  V  S  +RC  P P Q      Q   LHR  + + G FH ++R  QP+LI  K+D  + G W SVF P W+ +  +      +   AP++SR  +   E+R LL+R M LCS+ TF++AI   +FL  L  +L+G  +    T IL P+I LY++I+VFLP+L+L ++ Y R T R  E
Sbjct:   20 GSRNIADDPLRMPPIIAGHLLDLVFVIIILLKLEEILDWNWAAVFAPLWGTDVCFMFIKIVEVKRSASALARHSGDGVGDKLGAILIPAFGMLEHAAVAVTKILLVMFLEDQGGVSKYPLTLLFLPIWASVTSSSFIRCCLPSPAQRQNRTAQPAALHRCSALVAGTFHFLSRALQPLLITTKIDNFLSGDWWSVFTPAWILLCVMLCISVIVGNTAPLISRHQLEATEVRILLVRMMFLCSLVTFTVAIFGFMFLYNLCRKLEGGRDTASITQILIPVIILYSLIMVFLPMLILASQRYHRATQRLVE 328
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S2XWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWW7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.760e-10
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 2 
Query: 2651 QTTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVL 2803
            +T+C +C   +++AVL+ECGH G+CF CAQ LA   P QCP+CR +I ++L
Sbjct:   30 ETSCLVCWNARSNAVLLECGHSGLCFPCAQALAQRYPQQCPMCRQNIVQIL 80
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S0I1C8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I1C8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-9
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 2 
Query: 2651 QTTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVLMFG 2812
            + TC+ICC    DAVLMECGHGG+C  CA Q A   P  CP+CR  I  V+  G
Sbjct:   43 EPTCWICCSGPCDAVLMECGHGGICMDCATQCAKKRPPLCPLCRARILVVVKVG 96
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.230e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 2 
Query: 2660 CYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVL 2803
            CY+CCV + +AV+MECGHGG+CF C + LA+  P  CP+CR  I  VL
Sbjct:  540 CYVCCVSRKNAVIMECGHGGICFECGKSLASRHPRNCPICRAPISAVL 587
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S4F120_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F120_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 1.430e-8
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 2 
Query: 2654 TTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEV 2800
            +TC+ICC+  ADAVL++CGHGG+C+ACA++     P  CP+CR SI+ V
Sbjct:  243 STCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVV 291
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.820e-8
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 2 
Query: 2660 CYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVL 2803
            CYIC V   DAVLMECGH G+CF+CAQ+LA   P  CP+CR  I  VL
Sbjct:  430 CYICYVAPRDAVLMECGHAGVCFSCAQKLAVRHPRSCPICRQPISTVL 477
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S4BGL3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGL3_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 2.170e-8
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 2 
Query: 2654 TTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEV 2800
            +TC+ICC+  ADAVL++CGHGG+C+ACA++     P  CP+CR SI+ V
Sbjct:  293 STCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVV 341
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A7S4BGL5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGL5_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 4.770e-8
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 2 
Query: 2654 TTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEV 2800
            +TC+ICC+  ADAVL++CGHGG+C+ACA++     P  CP+CR SI+ V
Sbjct:  531 STCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVV 579
[Close]
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Match: A0A6U5ESI1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5ESI1_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 6.520e-7
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 2 
Query: 2639 GGHRQTTCYICCVRKADAVLMECGHGGMCFACAQQLANTPPAQ--CPVCRHSIQEVL 2803
            GG R+T C+IC     DAV++ECGHGG+C  CA++L         CP+CR  I +V+
Sbjct:   35 GGGRETACWICFEGPRDAVMLECGHGGICMGCAKRLLKKKGRGKGCPMCRQPISQVV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig883.16358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FJ86_ECTSI2.230e-29053.96RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2USS3_9STRA2.280e-4636.89Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S2XWW7_9STRA8.760e-1050.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0I1C8_9EUKA1.720e-953.70Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3ZTM6_9STRA9.230e-956.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4F120_CHRCT1.430e-855.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3JUI3_9STRA1.820e-862.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4BGL3_CHRCT2.170e-855.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BGL5_CHRCT4.770e-855.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6U5ESI1_9EUKA6.520e-745.61Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig883contigH-elongata_contig883:3552..16226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5.8e-07
Seed eggNOG ortholog157072.XP_008865213.1
KEGG rclassRC00052
KEGG koko:K07512
KEGG ReactionR01278,R03776,R03856,R03989,R04753,R06985,R07162
KEGG Pathwayko00062,ko01100,ko01212,map00062,map01100,map01212
KEGG ModuleM00085
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
Ec32 ortholog descriptionTransmembrane Fragile-X-F-associated protein
Ec32 orthologEc-12_008460.1
EC1.3.1.38
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons11
Model size4774
Cds size2799
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.631127-UTR-H-elongata_contig883:3551..50841622931284.631127-UTR-H-elongata_contig883:3551..5084Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig883 3552..5084 -
1691679773.1537077-UTR-H-elongata_contig883:3551..50841691679773.1537077-UTR-H-elongata_contig883:3551..5084Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig883 3552..5084 -
1622931284.871555-UTR-H-elongata_contig883:15784..162261622931284.871555-UTR-H-elongata_contig883:15784..16226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig883 15785..16226 -
1691679773.27892-UTR-H-elongata_contig883:15784..162261691679773.27892-UTR-H-elongata_contig883:15784..16226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig883 15785..16226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.6615603-CDS-H-elongata_contig883:5084..61671622931284.6615603-CDS-H-elongata_contig883:5084..6167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 5085..6167 -
1691679773.1690814-CDS-H-elongata_contig883:5084..61671691679773.1690814-CDS-H-elongata_contig883:5084..6167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 5085..6167 -
1622931284.6847985-CDS-H-elongata_contig883:6478..65951622931284.6847985-CDS-H-elongata_contig883:6478..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 6479..6595 -
1691679773.1780715-CDS-H-elongata_contig883:6478..65951691679773.1780715-CDS-H-elongata_contig883:6478..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 6479..6595 -
1622931284.6978965-CDS-H-elongata_contig883:6889..70241622931284.6978965-CDS-H-elongata_contig883:6889..7024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 6890..7024 -
1691679773.1857085-CDS-H-elongata_contig883:6889..70241691679773.1857085-CDS-H-elongata_contig883:6889..7024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 6890..7024 -
1622931284.7142406-CDS-H-elongata_contig883:7378..75701622931284.7142406-CDS-H-elongata_contig883:7378..7570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 7379..7570 -
1691679773.1944635-CDS-H-elongata_contig883:7378..75701691679773.1944635-CDS-H-elongata_contig883:7378..7570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 7379..7570 -
1622931284.7277682-CDS-H-elongata_contig883:8715..90031622931284.7277682-CDS-H-elongata_contig883:8715..9003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 8716..9003 -
1691679773.2041998-CDS-H-elongata_contig883:8715..90031691679773.2041998-CDS-H-elongata_contig883:8715..9003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 8716..9003 -
1622931284.741705-CDS-H-elongata_contig883:9283..94461622931284.741705-CDS-H-elongata_contig883:9283..9446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 9284..9446 -
1691679773.2179039-CDS-H-elongata_contig883:9283..94461691679773.2179039-CDS-H-elongata_contig883:9283..9446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 9284..9446 -
1622931284.7582722-CDS-H-elongata_contig883:9733..99471622931284.7582722-CDS-H-elongata_contig883:9733..9947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 9734..9947 -
1691679773.2274816-CDS-H-elongata_contig883:9733..99471691679773.2274816-CDS-H-elongata_contig883:9733..9947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 9734..9947 -
1622931284.771283-CDS-H-elongata_contig883:10750..108261622931284.771283-CDS-H-elongata_contig883:10750..10826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 10751..10826 -
1691679773.2362442-CDS-H-elongata_contig883:10750..108261691679773.2362442-CDS-H-elongata_contig883:10750..10826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 10751..10826 -
1622931284.8038867-CDS-H-elongata_contig883:11514..116131622931284.8038867-CDS-H-elongata_contig883:11514..11613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 11515..11613 -
1691679773.244365-CDS-H-elongata_contig883:11514..116131691679773.244365-CDS-H-elongata_contig883:11514..11613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 11515..11613 -
1622931284.8241186-CDS-H-elongata_contig883:13945..140831622931284.8241186-CDS-H-elongata_contig883:13945..14083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 13946..14083 -
1691679773.2533696-CDS-H-elongata_contig883:13945..140831691679773.2533696-CDS-H-elongata_contig883:13945..14083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 13946..14083 -
1622931284.8529441-CDS-H-elongata_contig883:15490..157841622931284.8529441-CDS-H-elongata_contig883:15490..15784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 15491..15784 -
1691679773.2703443-CDS-H-elongata_contig883:15490..157841691679773.2703443-CDS-H-elongata_contig883:15490..15784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig883 15491..15784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig883.16358.1prot_H-elongata_contig883.16358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig883 5085..15784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig883.16358.1

>prot_H-elongata_contig883.16358.1 ID=prot_H-elongata_contig883.16358.1|Name=mRNA_H-elongata_contig883.16358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=933bp
MPSGPSTLPLELSDISDDRREQLELRRRREMVRLEEENEARAGTGNFRWS
PIAMIPAHLCVLIFLIFLLEKLEDNIDWPWAAVLSPLWITDTLFIVVKSK
ELRKIMRTMVHAPSEVHALFPPVRGIIDHLGVAAAKVTLAYRLEGKVDWS
LLLLFTPMWLCVLLSGALRCMTPPPPQVMGEQQIVLHRMGSFMTGLFHLV
ARGAQPMLIVLKVDGQVDGPWASVFIPLWMFMGAIAVGGFALCCCAPMVS
RGVIPEIRPLLIRGMRLCSVGTFSLAICALLFLVFLTLELDGNENMPPRT
ILAPLIALYAMILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNAVAGTP
VFGDVGPGEGARGNEGFAQPAAEGRRRPRGRPSMTPTILMRESSTLFRRA
SVSFCRRLGEANSAAVDSDVISFELWDWSLRRSSSRNSDEVGGTSGGVER
GPRRSSRSFHDFLRHPPGPNSMGGQRFTAAEAGTANREKARSRFKASTER
QRAGAEKEASPRQRGSGEVASKASPEASECFCKDERHDRALLPGDSGTHS
VTDSYDLNSYGSYVDSDEENHEVGLSIDGDEDEDGQDELGVGLRGSSSHS
AASTAACAAVAASAAPPVPSQHSMTTSTSQSPEILLAFGSTHGAAAYSLH
GGGSGHGMSGNRWSVGREGGSRHGSSLHGAPRGGIMPRRVSWPSGMSTAD
FGMDSGNGEGDANGDDDGARDIEAGLGEGGGAGGHRQTTCYICCVRKADA
VLMECGHGGMCFACAQQLANTPPAQCPVCRHSIQEVLMFGGVLTVPTGGS
LGAPLPSGGSGNAQTPDTHQPASLGMSGPPPAPRVAGSSSSTTQSTTSGP
PPPPRGVVGSLRRFAEPDVGRALSAGVSAQGGVTQPSRGAGDACGTSAAA
QGEAPPPPARDPTRRELEAQGLSEEGGWLDPV*
back to top

mRNA from alignment at H-elongata_contig883:3552..16226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig883.16358.1 ID=mRNA_H-elongata_contig883.16358.1|Name=mRNA_H-elongata_contig883.16358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=12675bp|location=Sequence derived from alignment at H-elongata_contig883:3552..16226- (Himanthalia elongata Himel1 dioecious)
AACGGAAAAGACCATTCCCTGTAAAGGAGTGTGATTCCCTGCTCCGATTG
CTTGGACTCCCGCCGTCGTCACTTTTTTTTGTACGGACGGAAGTCATCTA
CGCGGCAGAAGGGATACAAAAGTAAACCAAACAGCCCCTTGAGAGAGGGT
TTGGGTCGAATTTTCATTAGGCTCTCTTCGTATACTTAAGCCGCTTCGCG
TTGAATTTGGGATGCGTGTCGGATTTTAGGCACCCACCCTCACTATATTT
GGCCTGTGATCAAAGTAGCCGACTGCCGAAGGCGCAACAGTGCTCTTGGT
GAGACGTCGGAGGAGGCTTCGATCTTTCCGAGCTTCTGGTGGGGGCGGAG
CATCTGCTTGAGGGCTGTAGGGCACCTGCTGTCTGACCGGCTTCAGCAAA
AACATAACCTTGAACAACGATTTTTCATCCTTTTAAACTACCATGCCTTC
GGGGCCATCCACGCTTCCGCTCGAGCTCAGCGACATCTCTGACGATAGGA
GGGAACAGCTGGAGCTTCGGCGGCGACGGGAGATGGTGAGGCTAGAGGAG
GAGAATGAGGCTCGCGCTGGGACGGGCAACTTCAGATGGTCCCCGATCGC
GATGATCCCCGCGCACTTGTGCGTCTTGATTTTCCTGATTTTTCTTTTGG
AAAAGCTTGAAGACAACATCGACTGGCCGTGGGCGGCGGTGCTTTCGCCG
CTGTGGATTACAGATACGCTGTTTATCGTCGTCAAGGTAAGCACTGGATT
GAGACAACCAACCCTTGGTTCTGACTTGAATGGTTACCTTGAGACCTACA
AGCCATGGCGGATGTTTCAAAACGACCTGCCTTTTTGAAAGAATAATTTG
CTGCTGCCACCTATATTTAGCACTCATCTTTTCGACGGCCCGATGTCACT
GATGACATGCCGCTTCGTTTCCGGGGAATCGCGGCCCCAGTTACGTGGAT
CGCCTTGCCACCTCATCCCTCCTGCCCTTCCCCACAGACAACGGCAATGA
TCGTCGTGAACTATGTACTGATGTCGCAGATATTCACACAGAAATAGTCT
TGAAATAGTTTAGTTTTTATGATGCTCTCCAAGCGAGCGCTTGCAGCACT
TGCGCTGTTGGATTGATAGTGTTTCTGGTTGGCACGCCCATGTCCACCTC
CGTCCAACGCGGTACGTACTGTAACCAGGAAAATAATGCAAGTTATCACT
GGGTTGTAGTTCGAAGTTGACCTGGGATGTAGAGGGAGTTGAAAGTGGAG
AATTACATAAACCAATCTCTTAACTTCACTGCGGCCCATGCGGAAGACAG
TTAATGCGTCTTTTCATAAGAGAGCCACCGGGCACAGCGGCCCCTCTGCG
TGGTCGGTTGGTTGTGCTCCTACGTACCCCCCGCCCAAAACGCAGTCATT
AGACTAACTCATGAAAAGTACTCGTAGGGTGGAACACACATTCGCTGTTG
CTCATTGCTCAGTCCCAATCTTTCGGCCGTGGCGATTTGCGTCAATTTCG
TCGATACCAAGTCTGCTCTAGACGTTAAGCACTATTTCGTTAGGCGCCAC
TGAGGGCATAACCTCTTCAAAAGCAGTCGTACAAAGCCATTTATTTTCCA
TTCAAGGGAGGCACACTCAATCATAACCAATACCTTCGGGAAATGGAATT
TTAAATTTTTCAAATTACACACTGCCGTATATATCTTGATCGAAAGGGTT
GAAAAACGTAAAGCTCCGCCGAATGGTCCTCTTCGCAAGTCGACCTATTG
TACGCTACGGTACGGTCCCCACGATCCACGACATAGTATAATACTATATT
ATAATAATATATAGTCGTGAAGTACTGTACAGTACGTGAGGGCGAGGGTT
CGAATGAAATCGTATTTTTTTGAATAAGACACAGTCAACACCGTATTTTC
TTTTTTCCTACTATAATATTAAGACTGTAATAACAGTCTATTATAGCATT
ACTCGTATAATAATATTAATATATTATCTCTTCTTCGGTGATCCTTTATT
CTTCTCTGTTCAAATTTTTGATATTTTGCGCCATTTTCCGCCCCCTTCCC
CCCCCCCCGCCCTTCCTTGTACCCTCCTCTCCTTCCCCCGTCCCCTGTCC
CTGTCCCTTGTCCCCTGTCCCCTCACTCCACGTATAACAACAGTCCAAGG
AGCTTCGTAAAATCATGCGCACGATGGTGCACGCCCCTAGCGAGGTTCAC
GCGCTCTTTCCTCCAGTAAGAGGCATCATCGACCACTTGGGTGTCGCCGC
CGCGAAAGTGACCCTAGCTTACCGATTGGAGGTGAGAGGGAAAATTCACA
TTCATTCATTCATTCATTCATTCATTACTACAGTATTACTCTTAATATTA
CTATTACTATTATCATCAGACTATTAATTAGTCTCTAATGATATAGTAGT
AGTAGATAGCATAATCGATATTTCGAGCGAAATATTTCAAAACAACCCCA
CCTGCCCTATACCCTTGTCAAGGAGCTCCCGTATCTAATCTTCTACTAGG
AGCGCTAAAATATTTCCAGTCTGGAGGGTTGACTCATCTAATTACAGTAC
TAATAACTGTAGAGACAGCTATTATATTTAAGTCGAGTAGGTAGCACTTG
AATATTTTCCATACGTGCCTTGAACAATACTAACGGTATCCATCCGGGAA
GTTGACATAATTACAGTCTACAGAAGACAGTCTACAGTAGCTTTTCTATT
CGAGGCGTCAGCTACACGCACCGAAATTCGAATTTGAAAAGTTGTTCATG
CCGACAGTTACTTGTGGTTTATACAGTATTGTATACAGTATATAGTACTC
TATGTAATAGCTGTCATCCGTTCAGTCCGATTGTCAAAATGTCTCGGTAG
GAGTTTTTTGCCATGGTTTGTGCCACTCTCTGCCTCTCGTTTCCTTCCCT
TTTGGTCTCTTATTGGTCAACGAAGAGCGACACTTTACAGTATTGTATTA
TAGAAATATCTTGAATTATTTAGACCGGTCTTAATAGACCTTTTCGACAA
AAGACGTACTACAGGGATGATTAGGGACGAGTGGCGATTCCTTTGCGGAA
GAGCAAAAGCCACGATATCATTGATATAATTCGACGGATTTTTTAACCCA
TGCATCCCGGGAACACGGGACACGATTGTGTCAGGCTCAACCCCAGATTA
GAGGGAAGCGCGTTTGTTTCAGCTTCGGGTTAGGGGATAACATAGGGGCG
TCAGAGGAGTTCAGCGGTAGTTCAGCGGTTGAAAATGTGACGAGATTGTG
TATCCGTTTACCCTTTAGGGTGAGACAGCCTATTGAGGGTAGTGAGAGGA
TGGGCAATGGTTTAATAGATGGGATCGGTAACATATCATAGGACGTGGGA
TGGTTTCGTATATACTTTACTCCACGGGAGGAAGTGTGATAAACAAACAA
CACCTCACGGTACCGATTGGGGCAATCGCAAGCCATTTGTGGCTTACAAA
AATGGACAACTCCCTTAAAACGAAGGTAGAGGAAAAACAAACCTCTCGTT
GTGTTCTGAGGGTTTGATTAAGTTCATGGCATGTTTTTAAAGAAGAAAAA
ATAAAGCCCTGTTAAATACTACAACCACTGTCTGTAGTGTAATATTTCAA
ATAAAAGTAATATAGGTTTTCTTCTGTGGTGGCGTGCTTCGTGGGTCTGT
AAGGGGGGAATGGAGCCAACTACGGCGCCAAGTTGGCCTTCCTTTACCAC
GCGTTTTCATTATATTAATAATACAACACTTACTACGATTTATCATGTGT
GAAGATTTTATACTCAAGGCTAGTATTGTACACATTCGAACCTGACGATA
GTTGGTCCCCTGGATTGCACCTCTCATGGTGCTAAGAAGGCGTGGATGTT
CGGAGGGTTGGAATGAGTTCATATGTTTAAAAATAAATAAAATAATCTAT
GAATAATGAATAGGATAGTTGCACCCCACTTTATACACTTTCTACTTATG
GCTGTAGGTTGGACCTGCTCTTGGTGCTCTTGGGTCGGAGTCCAACACTT
TCCATTTCAAGCTTGAGTTACTTGAGCTGCATGGGGTCGGGATGACGACG
GGAAATATACTACTCTGTAATACAGTAGGCGTGTTCTGGGCATAAAGGAA
GTGCATATTTGATTCGCCGGCGGTGCCACGGATGCTCAGAGATCGTTTCT
GTTGAGCTACAATACCAAAGTGACCCGCGATTTTTGTGCGAGAGGCATCG
AGAGCAAAAGCCTTAGGTTTTTTCCTAAAGCCGTAGCCTTTCCTCTAGCC
CTTCCACCGAGCTGCAGGATCGCAGGATCACAATTTCAAGCGTCATACTA
CTTTAGGTTGACAACCCATTGTTACTATTTTGCTGTCAATAGGGCGAGGA
TTGATCCCAGCGTGGTTTCTCTCTCCCATCTGCGCCTGCACCAGAGAAAA
CGAGCACCTAGAATATCACCACTTGTCGACGTCGCCGCCGCTTTATCTGA
TTTTTATTCGTTGACGGAGTTGACGGGTCCGCGTTTTCCTGTCCCCTCTT
AGGATAAACGCATTCGATTTGTAAATATAACTCTATAATAGAAAGATATA
AACATTCCCTTGCTTGCGCCGACAATCATCTCCCGATGAACGAACCACCC
GTGTGCCTTGCAGGGCAAGGTGGATTGGTCGCTGCTTCTTCTGTTTACGC
CTATGTGGCTGTGCGTCCTTCTCTCCGGTGCGCTGCGGTGCATGACGCCC
CCCCCTCCTCAGGTTAGTCACGTCAATATACTAAATATTACTTATATACT
ATATACTCCATAGAGTGCCGTCATTATCTGAGAAAGACAGACAGCGAGGA
TATAAAACAGAAACACGCCTACGCCAGCATGCCTGGTAGCATGGTCTATG
TTCCTTGTACAGTAATTCAGATTCCGGATTAACAACAGCTCGTCAGGCAG
TACAGCATACGTTGTAGTTCCTACTCAAGGTTATATAGGTTATATGTCGT
GACGCGGGTAGGAATTTCAGCGTTTCCGGGGCGATAGAACCTGAAAATAT
TTTTGCTGTTAATGGACAGATCGTTATCTCTCCCGGTAAGGCTTTTCATT
GAAAATATTCAAGAGTTTGTCAAATATGGTATATAATTGGTAGCCACAAT
TCTGCTTAGAATGTGATACTAATATAGTATATATTTTAATATATTTCAAT
ATATATACATTGAAATTTACCTCATCCTCCTCCCCCCTCTTCGCAACCGT
ATAGTGGCGGCGAAGGTGGCAGTGGCAGTGTCCGTGCCATCTCTTTTTCC
TGTCGCGTCCGTTCAGCGCTATCTTCTCTACCTTAACTAAACTAAACTGA
ACTAAAGTGAAACACTTGGCTGAACAAGGACACGCATTCGCTCTTGCACT
CGTTGTTGGGGACGATTGATCCCGTCCCCTATGTTTGCTTCCCGGTGCAG
GTAATGGGGGAGCAGCAGATCGTGCTCCACCGGATGGGGTCGTTCATGAC
GGGCCTTTTTCACCTGGTCGCGAGAGGTTAGACTCAGCGTGTCATGTTTG
TTGTATGGTGTAGTATTTACGGGTGTCGTGCGACGTTCAGAGCCAATTCG
CCGCGCGGCCGATCGGATATGGTCATACACAGAGAATTACACTTTTTTTA
AATGGAATGGGGGGAGGAAGAGAGGGGGAAGAACGCCGAGGGCCGAGGCC
CGAATGGATAGGGTGGCTCGTGTACTGAGTCAAGCTAGAAGGCAATGTTT
TTTGGGGGTGTAAGGTGTTTTTACCGGACGACGGACAGCCACCCTCTCGA
GGACATCTTGCAGAGGACGGAGTAATGACGTATTGCTCATCTTCGAGAAA
GCACTTGAACGGGGTCCATCCCAGGGATGACCCCGAGGGTAAAATGTGAC
TACCGTATTATTTTTTACCTCGTTTTCTGGGGGGTGGGGGGGAGAAGGAG
CTTTTCGTTTGGTGTCTCTGAGAGTCCATCTTGCTCGTGTGCGTCTGGAG
TGTGTCGCGTGTACGAGTCGACAGCGTTTCGTGGGCTTACTGAGTTGTCC
ATTGAGCCAGACAGGGTTGTTGCATGTCTCCGCCTTGGAGCTGGTAGACG
TTACCGCGATCTATCCATCAGGGACGTTACAATGTCTGACGTGCCGTGCC
GCGCTCTCCCCATCGGCAAGAGAAATTAACCGCAATATGCCGGGTGACCC
ATTGCCGTAACATCACATCCAACTGCGACATAGTGTGAGGCCAACACCAC
CACCAACAACAACAATTTGAAGAGTGCCAGGTTTCTCGACGCCTTTTAAA
AGTGTAATTCTCTGTGTATGACCAAACAGGAGCACAGCCGATGCTGATCG
TCCTGAAGGTCGATGGGCAAGTGGATGGGCCATGGGCATCCGTGTTCATC
CCCCTGTGGATGTTTATGGGGGCGATCGCGGTTGGTGGGTTTGCGCTTTG
CTGCTGCGCGCCCATGGTGTCACGGGGCGTTATTCCCGAGATCAGGCCGC
TGCTTATTCGAGGGATGCGGCTCTGCAGCGTTGGAACTTTCAGGTATTAT
CCTTGTTTCGGGGGATACCGTTTAGTTTTTAGGGCTAGGACTTTTACAAA
AAGGGGCTAGTGGGTAAGGTGCAGGGCAGAGTACTGGCCTTCTCTACTCC
TCGGATAAGTTAAAAAGAGACAAGTGGATGCTGGAACCAAGCAAATAGGT
AATTAAACCCGCCTCAAATATATCGATTGATCATGCAAACAGTCCCGTCC
GAAAGTTCGAAAACCCAAACAAAAACGCCTGCGCGGGGTTTCCTGGGTAC
TCTCTTTCTCTATACTCGTCATTTCCGCAGTTTGGCGATCTGTGCGCTTC
TGTTCCTAGTCTTCTTAACCCTTGAGCTGGACGGCAACGAAAACATGCCG
CCAAGAACGATCCTGGCGCCCCTCATTGCGCTGTACGCGATGATACTGGT
ATTTCTGCCGCTTCTGCTCTTGGTGACGCGACATTACGTCAGGGTGAGAC
TCACGAACAAACCAAATACTAGAGTCTTCAACGCGATCATTGTTCGCGTG
TAAGATTACTTCAGTCGTCATTACATTAATCAATCTCGCACTCTGGATGG
GCGTATTACTATCGTTAGCTCTTCGTGTGTAGAGGAGCGTATTTTAGAGA
CTAAGCTGGCGGCGTGTGGCCTTCGTAGAAAGTAGTTTTAGTTCACTAGC
GTAGTACTAGGTGTATATGTATATACCACCCTTTCATATGTCCTTTTCTC
CGGAATGGCGCCGCTGCCGACAGACAATGCGTACGGCTGAGGAGCAGTTC
CGACAAGCGAACGATCCCAACGCCGTGGCTGGAACTCCCGTGTTCGGAGA
CGTTGGCCCCGGGGAAGGGGCGAGGGGTAACGAAGGGTTTGCGCAACCGG
CCGCAGAGGGACGCCGTCGGCCAAGAGGACGACCCTCGATGACGCCGACG
ATTCTGATGCGAGAAAGTTCCACCCTTTTTCGCCGGGCGTCGGTGTCCTT
TTGCCGGCGGCTGGGGGAGGCTAACAGCGCCGCAGTGGATTCAGACGTCA
TTTCTTTTGAGGTGTGGCTAGCGAGGAAAGCTGGGGCTGTTGGGCTGTAG
TAGGGTTCAAGACAGGTCGACTTCGCTTCTGTAAGACGACGTGTTGTCAT
CGCGCCGGATTTTTTCTATTTTGCCGACCTGGTGGACACAAGCCTAACTG
TAGATCACGTAGCCCACAAATGGTTTTACGGGGAAAGTGTCCCCTCGGTA
GATGTTTAATATTATAGTCAATATTATAGTAAAAATAGACACACATAGTT
TAATATACAATGTCAAGCACCGAACGAACGGCACGGGGCTAACCACTACC
CCAACAGAAGAGGTATCGAAACCGACCCACCGACTTCAGCGTTTGCTCTC
CTCTCTGCCATGATGAGTCAAAAGACTTGAGTTTTTCTTCGTGGCGAATG
TTTGAGGTCGGTGGGTTTCGGTATATCTGCCGAGGGTGTAGTGGTCCGCC
CGTGCCGTTCGTTCGGTGCTTGAATTCCCCAAATAAATCAGTGGCCACGA
GTACAGTTTCCCCGTAGAAAAACATGTGCGGCTAGGTGTGCAGAAAAAAC
TACGATGCTGCGTTGCGCACAACTGGGAATCTCCGCCACAAAAAATCGCC
GAGCAGAGCCCCTCTCCGCATGCCAGCCCCAGCGTCTAGTAGATCTTCAC
CGCCAATTATTTTTTCTCGCGATATTTTTTCTGGCACCGTGGGGGGTTTT
TCCATCAGGTTTTATTCTTAGCATGGCTGGAATCGAACTAAATCGACCGC
TCGATCGAAAGCGTTTGTAGTCGCTGACCCGTCTAGCTGACTGATCTAAG
CGGTTAATTTCCATTCAAAAATCCACGACCATCACACTGAGTTTGGAACA
ATTGTTTTGGAAAGACCGTGGACCAAAGCAGCAAGAATATGCTGGCACGC
GCTACCACACGGTGTTATCCTTGTTCCCGGATACGCCTTATCTAAAAAAA
CTTTTGCCGTGCGGCGAGCTGCTCGAGTCATGTTTCCCCCGCTCGAGAGA
GCAGTTCCGCTCCTTTTTCTCGCTTTCCAGTCAACCATCCCTCCTCCCGT
GCTCTATCTGTGACTGCAATCTACCTCTATACCTCCACCCCCGCCTCCTC
GCTTGTTTGACTTCACCGCGCCTTTACCGCCTCCACCATCATCGCTGAAC
GTACAGCTATGGGACTGGAGTCTTCGTAGAAGCTCTTCGCGCAACTCAGA
CGAGGTCGGCGGTACGAGCGGGGGAGTAGAGAGAGGTCCAAGAAGATCAT
CCAGAAGCTTCCACGACTTCTTGCGGCATCCCCCGGGGCCGAACTCGATG
GGCGGCCAGCGATTCACGGCCGCGGAGGCAGGCACGGCGAATCGAGAGGT
GAAGTACGGACCGTGCATGTGTGTTTAGTGGTGTGTTGTTTGTTGTGTGT
TCGAAGCGCTACGCTGCGCCGTTCACTCCCGCGCGTCCCTCGCATTAGTT
ACCCTGCTGCAGTTTCTCCCAAGGGGCCTGTTCATTTCAGTATTCCTCCC
CGGGGGATGGATGGGGGTTGCTTGAAGCGACCCCATCGGATAATTTTCGT
GATCGTTGTTGGGAGAACCAACAATAAAATCAAGGGCAGCTGCGATGGTC
GTCCACGAGTTTTCAGGTTCCTTGCGGTTTTGCCTGTCTGTTTTCTCTGT
GTCCTTTTTGTTCCCAGAACTAACTGGACACGTGTGTTTCGCTTGCCCAC
AGAAAGCTCGCTCGAGGTTTAAGGCGTCGACGGAGAGGCAGCGGGCAGGG
GCGGAAAAAGAGGCATCTCCGAGGCAGCGGGGCAGCGGAGAGGTCGCGTC
AAAAGCAAGCCCCGAGGCGAGCGAATGTTTTTGTAAGGTCGTTGGAAAGC
GTCGTTTCGTCTCCAGACGCAAGCTACGTAGCGTCATGCCGTTCGTCCCG
TGGCCGCGCAATGGTTGTAACGCAACATATTTTGGCGCGCCGAAGCAAAC
CTCGCGACCTTTCCTGTGTCAATTGTGGACGCTGCGTTTCTGGCACGAGC
TTCTTTCTCCTCCTCCACAGTTTATCACGTATTTTGCTGCAAGCTTGTTT
GCGACACCTTTCCTAATCCATAATTCCACGCTTTCGTTTGTCCGCTGGGC
GCGCTGGTGATGCGGGGCCTCAAAACATCAGGACGAGCGGCACGACCGCG
CTCTGCTCCCGGGGGACTCTGGGACCCATTCCGTCACGGACAGCTACGAC
CTCAACAGCTACGGTAGTTACGTGGACTCCGACGAAGAGAATCACGAGGT
GAGACGGTAGCTGTCCCTGTTCCTCCTAACCCTAGGGTATGCGTAGTTTC
TGTTCTGGAAGGAGACACGGGCGACCGACCATCCTTGCCCAACCCCGCTG
TCCTGTGCTAGGCGACCCAAAAAGCAACCGTTCCGATATCTTTGGTTGAT
GAGCGCGGTGAGGGTGATGTAAACATTACATCGCCTTATCGTACTGTGGC
CAGTCGGCCAAAGCCGAAAATAACTTTGAGCTTTAGGTTGATCTGAGAAG
GCGTGCATGAGCCCAATACACATACATGAAACACTGAAGCAGTCTGTCAT
GGGCAGCAGGTGGGTTTGTCAATCGATGGAGACGAGGACGAGGACGGTCA
AGACGAGCTCGGTGTAGGCTTGCGAGGGAGCTCCTCTCACTCGGCTGCTA
GCACCGCCGCATGTGCTGCTGTTGCTGCCTCTGCAGCCCCTCCCGTCCCT
TCTCAACATTCGATGACGACCTCGACGTCACAATCTCCAGAGATTTTGTT
GGCATTTGGCAGTACCCACGGCGCGGCGGCATACTCTTTGCATGGTGGTG
GAAGTGGACACGGAATGAGTGGGAACCGCTGGAGCGTCGGCCGAGAGGGG
GGCAGCAGGCACGGCTCAAGTCTCCACGGTGCGCCCAGAGGCGGTATCAT
GCCGAGGAGGGTCAGCTGGCCGTCGGGGATGTCCACTGCCGATTTTGGGA
TGGACTCAGGGAATGGGGAGGGCGATGCTAATGGTGACGACGATGGGGCC
CGAGATATCGAGGCGGGGTTGGGGGAAGGTGGCGGAGCTGGTGGCCACCG
CCAGACAACGTGTTACATCTGCTGCGTGCGGAAAGCAGACGCGGTTTTGA
TGGAGTGCGGACACGGAGGCATGTGCTTCGCGTGCGCACAGCAGCTAGCC
AACACGCCCCCTGCCCAGTGCCCCGTATGTCGGCACAGCATCCAGGAAGT
GCTGATGTTCGGTGGTGTTCTAACTGTTCCCACCGGTGGAAGCTTAGGCG
CGCCGCTACCGAGCGGAGGTAGCGGTAATGCTCAGACGCCTGATACCCAC
CAACCCGCCAGCCTAGGCATGAGCGGTCCTCCGCCTGCCCCGCGAGTGGC
TGGGTCTTCCTCGTCAACTACGCAAAGCACTACTTCCGGCCCACCGCCGC
CGCCTCGCGGGGTCGTAGGGTCGTTGCGAAGATTCGCGGAACCGGACGTG
GGCAGAGCTCTTTCGGCTGGCGTCTCGGCGCAAGGTGGTGTTACACAGCC
GAGCAGGGGGGCAGGGGATGCGTGCGGGACCTCGGCGGCAGCGCAAGGGG
AAGCGCCTCCTCCACCTGCACGAGATCCTACACGAAGAGAACTCGAAGCG
CAAGGCTTGTCAGAAGAGGGGGGTTGGTTGGACCCAGTCTGAAGTTGTCG
CAACTGAAAAATGTGTGTTGCCTCAACGGCGCGAGAGATACTGAAGTAAT
TTTTGTGCGTTGAGGGTGAAGTTGGGGAGCATACGGTAGGAATTCGTTTT
TTGTTGGCGAAGCGCGCGCGCCGCGTATCCATTGCGGTCATTTGGGTTCG
CTGTCAGTTGTAGAGCCGCACCACCCCTCTCGGGATGGACGTCTAATCAT
TTCCCCTTGTTTGATCTTATAATGGTTACAGGTTCACAATCCAATCGCTG
GTTCAAATTACCTAGTCAAGTGAGATTTTGTTTCTTTGTGCACTTGATCA
GTGTTGGCTTGATAGATGCGATGTTACAGATCCTTTGTCGAGCAGAAGAG
GGAGGCAAACCAAGGAGAGGGAAAGGGGACCGCAAGCTACAGGTTACATG
AGCGTCCATCCTCCACTCCCCGTCCCACTGAGATACTGGTATCATTTTTT
ATTTTGCTTGACCGTTGCCTCACGACTGTTGAACATACTGTGTTACTATC
AAGGCTGAGGACCACCAAAATATCCCGAGCTCCCTATAGGGGCGTGGGGG
GGAGGGGGACAGTGGTCAAGATTCATTCGTTCGTTACGTTTCACCTTCAG
CCGTGAGGCGGGGAAAATGTTGTTTTTTTGACTGAGCTGGAGTGTACATC
CACCGCACAGCCACGTCATGCTTGTAAGCCTCTAGTCGTGGTGGGTAGTC
TCATCGGGGGAGGGGCAGTAAACACTTTTGCGCTTACCACGACTATGCTT
CTAGCCGGTGCGTGGGGGAGAGAGAACACGATGGGGGTCATCAAAAGCGC
GCAATAGGCCCGGTACTTTACCCTGTTTGCCCCTCTTCCCTGTTGACTGC
ACTACACGGCTTAGACCTCGGGGATGGCAGATTTAGACAAGAGGGGTTTA
AAAGGAAAATGACGATGCTGGCGAATCGCTAGACGGCGAGTCTTGAGTGC
AAGAGCTCCCAGGCGCACCAACGAGGGTCTCCGTTTGAATCTTGCGCGAA
GCAGCTGCGCAGAAAAGAGAGGCTGGGTGACAAACTTGACTATGACAATA
CGTGTAGGTCTCGCTTGAATTTAATTAACACACGTGAGAAGTCGTGCAGC
GACGTGGCTTGCGCGTTTGGTGTATATTTGTGTGTGAGATAGCAGACTTT
GGTTCGAGCTGCTTAGATAAGGAACCTGTGCGATGGAATCGTTTAAAGTT
TGACATCCCTGTCCATATCCGTGTGGGTGTTTATTGGCGACCGAGAACAC
TCGCTCTGTCAGTGGAAATACTGTGGTTACACCTAAAAACCCCCAAGTGG
GCAACGGATTTTTCGGAACAGGAACAGCCTGGCGATCCTCGGCCGCGAGT
AGACTGGTGTTTCGAATATAACTCAAGAAACGCACCTTAATAAACACGGC
TTTTTGTTGTTGTTGTTACTTTATTTGTGAACAGCATAGCCCACTCTCCG
GGTGGTGGGTATTTAGTATGGTAAGCATTCACCCTCTGCTGCGCTCGCTG
GTGCCTATTTGGAGAAGATAACTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig883:3552..16226-

>mRNA_H-elongata_contig883.16358.1 ID=mRNA_H-elongata_contig883.16358.1|Name=mRNA_H-elongata_contig883.16358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5598bp|location=Sequence derived from alignment at H-elongata_contig883:3552..16226- (Himanthalia elongata Himel1 dioecious)
ATGCCTTCGGGGCCATCCACGCTTCCGCTCGAGCTCAGCGACATCTCTGA
CGATAGGAGGGAACAGCTGGAGCTTCGGCGGCGACGGGAGATGGTGAGGC
TAGAGGAGGAGAATGAGGCTCGCGCTGGGACGGGCAACTTCAGATGGTCC
CCGATCGCGATGATCCCCGCGCACTTGTGCGTCTTGATTTTCCTGATTTT
TCTTTTGGAAAAGCTTGAAGACAACATCGACTGGCCGTGGGCGGCGGTGC
TTTCGCCGCTGTGGATTACAGATACGCTGTTTATCGTCGTCAAGATGCCT
TCGGGGCCATCCACGCTTCCGCTCGAGCTCAGCGACATCTCTGACGATAG
GAGGGAACAGCTGGAGCTTCGGCGGCGACGGGAGATGGTGAGGCTAGAGG
AGGAGAATGAGGCTCGCGCTGGGACGGGCAACTTCAGATGGTCCCCGATC
GCGATGATCCCCGCGCACTTGTGCGTCTTGATTTTCCTGATTTTTCTTTT
GGAAAAGCTTGAAGACAACATCGACTGGCCGTGGGCGGCGGTGCTTTCGC
CGCTGTGGATTACAGATACGCTGTTTATCGTCGTCAAGTCCAAGGAGCTT
CGTAAAATCATGCGCACGATGGTGCACGCCCCTAGCGAGGTTCACGCGCT
CTTTCCTCCAGTAAGAGGCATCATCGACCACTTGGGTGTCGCCGCCGCGA
AAGTGACCCTAGCTTACCGATTGGAGTCCAAGGAGCTTCGTAAAATCATG
CGCACGATGGTGCACGCCCCTAGCGAGGTTCACGCGCTCTTTCCTCCAGT
AAGAGGCATCATCGACCACTTGGGTGTCGCCGCCGCGAAAGTGACCCTAG
CTTACCGATTGGAGGGCAAGGTGGATTGGTCGCTGCTTCTTCTGTTTACG
CCTATGTGGCTGTGCGTCCTTCTCTCCGGTGCGCTGCGGTGCATGACGCC
CCCCCCTCCTCAGGGCAAGGTGGATTGGTCGCTGCTTCTTCTGTTTACGC
CTATGTGGCTGTGCGTCCTTCTCTCCGGTGCGCTGCGGTGCATGACGCCC
CCCCCTCCTCAGGTAATGGGGGAGCAGCAGATCGTGCTCCACCGGATGGG
GTCGTTCATGACGGGCCTTTTTCACCTGGTCGCGAGAGGTAATGGGGGAG
CAGCAGATCGTGCTCCACCGGATGGGGTCGTTCATGACGGGCCTTTTTCA
CCTGGTCGCGAGAGGAGCACAGCCGATGCTGATCGTCCTGAAGGTCGATG
GGCAAGTGGATGGGCCATGGGCATCCGTGTTCATCCCCCTGTGGATGTTT
ATGGGGGCGATCGCGGTTGGTGGGTTTGCGCTTTGCTGCTGCGCGCCCAT
GGTGTCACGGGGCGTTATTCCCGAGATCAGGCCGCTGCTTATTCGAGGGA
TGCGGCTCTGCAGCGTTGGAACTTTCAGGAGCACAGCCGATGCTGATCGT
CCTGAAGGTCGATGGGCAAGTGGATGGGCCATGGGCATCCGTGTTCATCC
CCCTGTGGATGTTTATGGGGGCGATCGCGGTTGGTGGGTTTGCGCTTTGC
TGCTGCGCGCCCATGGTGTCACGGGGCGTTATTCCCGAGATCAGGCCGCT
GCTTATTCGAGGGATGCGGCTCTGCAGCGTTGGAACTTTCAGTTTGGCGA
TCTGTGCGCTTCTGTTCCTAGTCTTCTTAACCCTTGAGCTGGACGGCAAC
GAAAACATGCCGCCAAGAACGATCCTGGCGCCCCTCATTGCGCTGTACGC
GATGATACTGGTATTTCTGCCGCTTCTGCTCTTGGTGACGCGACATTACG
TCAGGTTTGGCGATCTGTGCGCTTCTGTTCCTAGTCTTCTTAACCCTTGA
GCTGGACGGCAACGAAAACATGCCGCCAAGAACGATCCTGGCGCCCCTCA
TTGCGCTGTACGCGATGATACTGGTATTTCTGCCGCTTCTGCTCTTGGTG
ACGCGACATTACGTCAGGACAATGCGTACGGCTGAGGAGCAGTTCCGACA
AGCGAACGATCCCAACGCCGTGGCTGGAACTCCCGTGTTCGGAGACGTTG
GCCCCGGGGAAGGGGCGAGGGGTAACGAAGGGTTTGCGCAACCGGCCGCA
GAGGGACGCCGTCGGCCAAGAGGACGACCCTCGATGACGCCGACGATTCT
GATGCGAGAAAGTTCCACCCTTTTTCGCCGGGCGTCGGTGTCCTTTTGCC
GGCGGCTGGGGGAGGCTAACAGCGCCGCAGTGGATTCAGACGTCATTTCT
TTTGAGACAATGCGTACGGCTGAGGAGCAGTTCCGACAAGCGAACGATCC
CAACGCCGTGGCTGGAACTCCCGTGTTCGGAGACGTTGGCCCCGGGGAAG
GGGCGAGGGGTAACGAAGGGTTTGCGCAACCGGCCGCAGAGGGACGCCGT
CGGCCAAGAGGACGACCCTCGATGACGCCGACGATTCTGATGCGAGAAAG
TTCCACCCTTTTTCGCCGGGCGTCGGTGTCCTTTTGCCGGCGGCTGGGGG
AGGCTAACAGCGCCGCAGTGGATTCAGACGTCATTTCTTTTGAGCTATGG
GACTGGAGTCTTCGTAGAAGCTCTTCGCGCAACTCAGACGAGGTCGGCGG
TACGAGCGGGGGAGTAGAGAGAGGTCCAAGAAGATCATCCAGAAGCTTCC
ACGACTTCTTGCGGCATCCCCCGGGGCCGAACTCGATGGGCGGCCAGCGA
TTCACGGCCGCGGAGGCAGGCACGGCGAATCGAGAGCTATGGGACTGGAG
TCTTCGTAGAAGCTCTTCGCGCAACTCAGACGAGGTCGGCGGTACGAGCG
GGGGAGTAGAGAGAGGTCCAAGAAGATCATCCAGAAGCTTCCACGACTTC
TTGCGGCATCCCCCGGGGCCGAACTCGATGGGCGGCCAGCGATTCACGGC
CGCGGAGGCAGGCACGGCGAATCGAGAGAAAGCTCGCTCGAGGTTTAAGG
CGTCGACGGAGAGGCAGCGGGCAGGGGCGGAAAAAGAGGCATCTCCGAGG
CAGCGGGGCAGCGGAGAGGTCGCGTCAAAAGCAAGCCCCGAGGCGAGCGA
ATGTTTTTGTAAGAAAGCTCGCTCGAGGTTTAAGGCGTCGACGGAGAGGC
AGCGGGCAGGGGCGGAAAAAGAGGCATCTCCGAGGCAGCGGGGCAGCGGA
GAGGTCGCGTCAAAAGCAAGCCCCGAGGCGAGCGAATGTTTTTGTAAGGA
CGAGCGGCACGACCGCGCTCTGCTCCCGGGGGACTCTGGGACCCATTCCG
TCACGGACAGCTACGACCTCAACAGCTACGGTAGTTACGTGGACTCCGAC
GAAGAGAATCACGAGGACGAGCGGCACGACCGCGCTCTGCTCCCGGGGGA
CTCTGGGACCCATTCCGTCACGGACAGCTACGACCTCAACAGCTACGGTA
GTTACGTGGACTCCGACGAAGAGAATCACGAGGTGGGTTTGTCAATCGAT
GGAGACGAGGACGAGGACGGTCAAGACGAGCTCGGTGTAGGCTTGCGAGG
GAGCTCCTCTCACTCGGCTGCTAGCACCGCCGCATGTGCTGCTGTTGCTG
CCTCTGCAGCCCCTCCCGTCCCTTCTCAACATTCGATGACGACCTCGACG
TCACAATCTCCAGAGATTTTGTTGGCATTTGGCAGTACCCACGGCGCGGC
GGCATACTCTTTGCATGGTGGTGGAAGTGGACACGGAATGAGTGGGAACC
GCTGGAGCGTCGGCCGAGAGGGGGGCAGCAGGCACGGCTCAAGTCTCCAC
GGTGCGCCCAGAGGCGGTATCATGCCGAGGAGGGTCAGCTGGCCGTCGGG
GATGTCCACTGCCGATTTTGGGATGGACTCAGGGAATGGGGAGGGCGATG
CTAATGGTGACGACGATGGGGCCCGAGATATCGAGGCGGGGTTGGGGGAA
GGTGGCGGAGCTGGTGGCCACCGCCAGACAACGTGTTACATCTGCTGCGT
GCGGAAAGCAGACGCGGTTTTGATGGAGTGCGGACACGGAGGCATGTGCT
TCGCGTGCGCACAGCAGCTAGCCAACACGCCCCCTGCCCAGTGCCCCGTA
TGTCGGCACAGCATCCAGGAAGTGCTGATGTTCGGTGGTGTTCTAACTGT
TCCCACCGGTGGAAGCTTAGGCGCGCCGCTACCGAGCGGAGGTAGCGGTA
ATGCTCAGACGCCTGATACCCACCAACCCGCCAGCCTAGGCATGAGCGGT
CCTCCGCCTGCCCCGCGAGTGGCTGGGTCTTCCTCGTCAACTACGCAAAG
CACTACTTCCGGCCCACCGCCGCCGCCTCGCGGGGTCGTAGGGTCGTTGC
GAAGATTCGCGGAACCGGACGTGGGCAGAGCTCTTTCGGCTGGCGTCTCG
GCGCAAGGTGGTGTTACACAGCCGAGCAGGGGGGCAGGGGATGCGTGCGG
GACCTCGGCGGCAGCGCAAGGGGAAGCGCCTCCTCCACCTGCACGAGATC
CTACACGAAGAGAACTCGAAGCGCAAGGCTTGTCAGAAGAGGGGGGTTGG
TTGGACCCAGTCTGAGTGGGTTTGTCAATCGATGGAGACGAGGACGAGGA
CGGTCAAGACGAGCTCGGTGTAGGCTTGCGAGGGAGCTCCTCTCACTCGG
CTGCTAGCACCGCCGCATGTGCTGCTGTTGCTGCCTCTGCAGCCCCTCCC
GTCCCTTCTCAACATTCGATGACGACCTCGACGTCACAATCTCCAGAGAT
TTTGTTGGCATTTGGCAGTACCCACGGCGCGGCGGCATACTCTTTGCATG
GTGGTGGAAGTGGACACGGAATGAGTGGGAACCGCTGGAGCGTCGGCCGA
GAGGGGGGCAGCAGGCACGGCTCAAGTCTCCACGGTGCGCCCAGAGGCGG
TATCATGCCGAGGAGGGTCAGCTGGCCGTCGGGGATGTCCACTGCCGATT
TTGGGATGGACTCAGGGAATGGGGAGGGCGATGCTAATGGTGACGACGAT
GGGGCCCGAGATATCGAGGCGGGGTTGGGGGAAGGTGGCGGAGCTGGTGG
CCACCGCCAGACAACGTGTTACATCTGCTGCGTGCGGAAAGCAGACGCGG
TTTTGATGGAGTGCGGACACGGAGGCATGTGCTTCGCGTGCGCACAGCAG
CTAGCCAACACGCCCCCTGCCCAGTGCCCCGTATGTCGGCACAGCATCCA
GGAAGTGCTGATGTTCGGTGGTGTTCTAACTGTTCCCACCGGTGGAAGCT
TAGGCGCGCCGCTACCGAGCGGAGGTAGCGGTAATGCTCAGACGCCTGAT
ACCCACCAACCCGCCAGCCTAGGCATGAGCGGTCCTCCGCCTGCCCCGCG
AGTGGCTGGGTCTTCCTCGTCAACTACGCAAAGCACTACTTCCGGCCCAC
CGCCGCCGCCTCGCGGGGTCGTAGGGTCGTTGCGAAGATTCGCGGAACCG
GACGTGGGCAGAGCTCTTTCGGCTGGCGTCTCGGCGCAAGGTGGTGTTAC
ACAGCCGAGCAGGGGGGCAGGGGATGCGTGCGGGACCTCGGCGGCAGCGC
AAGGGGAAGCGCCTCCTCCACCTGCACGAGATCCTACACGAAGAGAACTC
GAAGCGCAAGGCTTGTCAGAAGAGGGGGGTTGGTTGGACCCAGTCTGA
back to top