mRNA_H-elongata_contig8829.16357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8829.16357.1
Unique NamemRNA_H-elongata_contig8829.16357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A6H5L390_9PHAE (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L390_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.800e-33
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 1
Query:   31 KEENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGR---QVSEFHLDQLSRLLLPTLTTRACMHALLQ 300
            +EENL+LRLQL+VGDEAEDAEN+EI EIK  L D VSRGV EGQILQTMDLL ER+ADYG      ++FHL QLSRLLLPTLTTR CMHA+LQ
Sbjct:  107 EEENLNLRLQLRVGDEAEDAENAEILEIKKGLHDQVSRGVGEGQILQTMDLLTERFADYGSAHTSAADFHLAQLSRLLLPTLTTRVCMHAVLQ 199          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A3S7YS51_9STRA (Fructose-bisphosphatase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A3S7YS51_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.020e-18
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYG---RQVSEFHLDQLSRLLLPTLTTRACM 285
            ENL L+LQLKVG+E++  E  E   I  +LDDMV  G SE  I QT+D+LKERY+DYG   R   EFH +QL +LLLPT  T+ CM
Sbjct:  534 ENLKLKLQLKVGEESQAQERQEKGRITKKLDDMVKTGASESDIWQTIDMLKERYSDYGSDRRSAIEFHTNQLEKLLLPTKLTKLCM 619          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A6U3ZZX6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZZX6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.540e-13
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRG-VSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHAL 294
            ENL LRLQL++G+EAE + N E + +   LDD++  G  SE  I  T++  KE++ADYGR      EFHL  L+RLL+PT TT   + AL
Sbjct:  328 ENLRLRLQLQIGEEAEKSSNLEQERLMEGLDDLLKSGSASESDIYATIEQYKEKFADYGRNRRSAIEFHLRNLARLLMPTTTTSVAIRAL 417          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A7S1YBV2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBV2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.250e-13
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHAL 294
            ENL LRLQL++G EAED+   E   +   LD ++  G SE  I  T++  KE++ADYGR       FHL  + RLL+PT TT   M+A+
Sbjct:   77 ENLRLRLQLQIGQEAEDSLQDEQGRVTTELDALLKSGASEADIFSTIEAFKEKFADYGRDRRSAIAFHLQNVERLLMPTQTTSVVMNAI 165          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A7S4IY02_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IY02_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.090e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHAL 294
            ENL LRLQL++G+EAE +   E ++I   LD ++  G SE +I   ++  KE++ADYGR      EFHL  ++RLL+PT TT   M AL
Sbjct:   95 ENLRLRLQLQIGEEAEKSSCKEQEKITTGLDSLLKSGASESEIYGQIEEFKEKFADYGRDRRTAIEFHLRNVARLLMPTTTTSVAMRAL 183          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A7S2PBD8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PBD8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-12
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHAL 294
            ENL LRLQLK+G+EAED + SE +++   L  ++S G SE ++ +++    E++ADYGR      +FHL  ++RLL PT TT   M AL
Sbjct:   73 ENLRLRLQLKIGEEAEDLDKSEEEKVTRELASLISSGASEKEVDESIIYYTEKFADYGRDRRSAIDFHLRNVARLLQPTTTTSVAMRAL 161          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A7R9YDU8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.670e-12
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHALLQ 300
            ENL LRL+LKVG +AE  E  +  ++   +  M+  G SE QI+  M  ++E+++DYGR      EFHL +L RLLLPT+TT+  +  LLQ
Sbjct:   24 ENLQLRLKLKVGRDAELKEEEDSTQVTQSVAKMLEEGASEQQIILMMKEMQEKFSDYGRDRISAIEFHLRELRRLLLPTMTTKVAVWVLLQ 114          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A835YXR1_9STRA (BZIP domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.740e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   16 LVGYEKEENLSLRLQLKVGDEAEDAE-NSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQVSE---FHLDQL 243
            L G E + NL LRL+LK+GDEA + E + EI  +K RL +MVS+G  EG IL  MD+LK ++ADYGR  +    FHLD+L
Sbjct:   69 LAGLEAD-NLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDEL 147          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A1Z5JPY7_FISSO (BZIP domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPY7_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 3.400e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYG---RQVSEFHLDQLSRLLLPTLTTRACMHAL 294
            ENL LRLQL++G+EAED+   + +++   +DD++  G SE  I   ++  KE++ADYG   R   EFHL  + RLL+PT TT   + A+
Sbjct:  155 ENLRLRLQLQIGEEAEDSRLRDQEKLTQDIDDLLKSGASEADIYAQLEEFKEKHADYGKSRRSAIEFHLKNIERLLMPTQTTSLVLQAM 243          
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Match: A0A7R9YDX1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDX1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.560e-12
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   37 ENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGVSEGQILQTMDLLKERYADYGRQ---VSEFHLDQLSRLLLPTLTTRACMHALLQ 300
            ENL LRL+LKVG +AE  E  +  ++   +  M+  G SE QI+  M  ++E+++DYGR      EFHL +L RLLLPT+TT+  +  LLQ
Sbjct:  203 ENLQLRLKLKVGRDAELKEEEDSTQVTQSVAKMLEEGASEQQIILMMKEMQEKFSDYGRDRISAIEFHLRELRRLLLPTMTTKVAVWVLLQ 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8829.16357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L390_9PHAE2.800e-3375.27BZIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A3S7YS51_9STRA3.020e-1855.81Fructose-bisphosphatase n=1 Tax=Nannochloropsis oc... [more]
A0A6U3ZZX6_9STRA7.540e-1347.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1YBV2_9STRA8.250e-1344.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4IY02_9STRA1.090e-1246.07Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2PBD8_9STRA1.100e-1244.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9YDU8_9STRA1.670e-1245.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YXR1_9STRA2.740e-1252.50BZIP domain-containing protein n=2 Tax=Tribonema m... [more]
A0A1Z5JPY7_FISSO3.400e-1242.70BZIP domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7R9YDX1_9STRA4.560e-1245.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8829contigH-elongata_contig8829:8236..9384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue6e-27
Seed eggNOG ortholog2880.D7G5J2
EggNOG free text desc.basic region leucin zipper
EggNOG OGs29I2I@1,2RR9D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.5697339-CDS-H-elongata_contig8829:8235..83121622931284.5697339-CDS-H-elongata_contig8829:8235..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8829 8236..8312 -
1691679773.1231434-CDS-H-elongata_contig8829:8235..83121691679773.1231434-CDS-H-elongata_contig8829:8235..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8829 8236..8312 -
1622931284.5853615-CDS-H-elongata_contig8829:9161..93841622931284.5853615-CDS-H-elongata_contig8829:9161..9384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8829 9162..9384 -
1691679773.1427927-CDS-H-elongata_contig8829:9161..93841691679773.1427927-CDS-H-elongata_contig8829:9161..9384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8829 9162..9384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8829.16357.1prot_H-elongata_contig8829.16357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8829 8236..9384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8829.16357.1

>prot_H-elongata_contig8829.16357.1 ID=prot_H-elongata_contig8829.16357.1|Name=mRNA_H-elongata_contig8829.16357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MRCDILVGYEKEENLSLRLQLKVGDEAEDAENSEIKEIKGRLDDMVSRGV
SEGQILQTMDLLKERYADYGRQVSEFHLDQLSRLLLPTLTTRACMHALLQ
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mRNA from alignment at H-elongata_contig8829:8236..9384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8829.16357.1 ID=mRNA_H-elongata_contig8829.16357.1|Name=mRNA_H-elongata_contig8829.16357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig8829:8236..9384- (Himanthalia elongata Himel1 dioecious)
ATGCGCTGTGATATCTTGGTTGGTTATGAAAAGGAAGAGAACCTGAGCTT GCGACTGCAGCTGAAGGTCGGAGACGAAGCGGAAGACGCAGAGAACTCGG AGATTAAGGAGATCAAGGGTCGCCTGGACGATATGGTATCAAGAGGGGTA TCGGAGGGGCAGATTCTTCAAACCATGGATCTCTTGAAGGAGCGCTACGC GGACTACGGCAGGCAAGTTTCAGGTCGAATTCATTTTGGCGACACGCTTC GTTGAGAGGCTCGGTAAGGGAGTTCGATAATACGCAAAGCCGTTCAGACG CGGGGTGGGGGGAAGAGGGGGGGTTGGCGATCGTGGCGAGGGGTAGAGTC GTGGAACCCGCTGTTTCCTTACATAAGATCGGTGGTTTTTGTAGGGTTAA GTTCCGTTTTACGTACCCTGAGATGTTGTCAACTTGACATTCGTGGAGAA AGGTCGTTACAGATCTAGACTAGCGCTATATCTCCTCTCACTATGCCTAG AGGTTGTTGGTGGGGTAAACAAATCGGGCGGGGACGCATATTTACCATTC CCGGTAAACGTGTGGTGGTAGTGTTAGATCCACCACCACACCGCACTCCA ATCAGACAGACATACACATGCACACATACACACAAACAAATCAAACCCGT GCGCATTTCGTCAATGCGTCCAACCTCTCTGGTCTCTCTCGATGTAACCT CTATATATAGTTACACAGCCGAGGGTGCAACACTTCTTTATCCGGGGTTT CTAAATAACACATGGCGTGTCTGGTTTGGCGTACCAAATACGAGGATGAC GACCAAAAGATGGCATCATTCTTGTATCACGCCACCCGGCCATCGAAAAC TCAGTATATCGCTCCGTCCGGGCATGGTTAGGATACGATATGCGTTTAAC ACAAGTACTCCCCCTCCTTCCGGGTTTCCTATTCTTGAAGGCATTTCGAC TGCTGACAGGCAGTTCACCCCCCCCCCTCTCCATTACCCATGCATACGTG ATGATTCAACACACTCCATCCACACACTTTTCTTGCTCGAACACTCGCGC AGCGTCCACACCTCGGCGGCAGAATTCCACCTCGACCAGCTCTCGCGGCT GCTCCTCCCGACCCTGACGACACGGGCCTGCATGCATGCTCTTCTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig8829:8236..9384-

>mRNA_H-elongata_contig8829.16357.1 ID=mRNA_H-elongata_contig8829.16357.1|Name=mRNA_H-elongata_contig8829.16357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig8829:8236..9384- (Himanthalia elongata Himel1 dioecious)
ATGCGCTGTGATATCTTGGTTGGTTATGAAAAGGAAGAGAACCTGAGCTT
GCGACTGCAGCTGAAGGTCGGAGACGAAGCGGAAGACGCAGAGAACTCGG
AGATTAAGGAGATCAAGGGTCGCCTGGACGATATGGTATCAAGAGGGGTA
TCGGAGGGGCAGATTCTTCAAACCATGGATCTCTTGAAGGAGCGCTACGC
GGACTACGGCAGGCAAGTTTCAGATGCGCTGTGATATCTTGGTTGGTTAT
GAAAAGGAAGAGAACCTGAGCTTGCGACTGCAGCTGAAGGTCGGAGACGA
AGCGGAAGACGCAGAGAACTCGGAGATTAAGGAGATCAAGGGTCGCCTGG
ACGATATGGTATCAAGAGGGGTATCGGAGGGGCAGATTCTTCAAACCATG
GATCTCTTGAAGGAGCGCTACGCGGACTACGGCAGGCAAGTTTCAGAATT
CCACCTCGACCAGCTCTCGCGGCTGCTCCTCCCGACCCTGACGACACGGG
CCTGCATGCATGCTCTTCTGCAGAATTCCACCTCGACCAGCTCTCGCGGC
TGCTCCTCCCGACCCTGACGACACGGGCCTGCATGCATGCTCTTCTGCAG
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