mRNA_H-elongata_contig88241.16354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88241.16354.1
Unique NamemRNA_H-elongata_contig88241.16354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.670e-27
Identity = 74/188 (39.36%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FLKHKSDA  A R  +    A +G+   + ++R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:  730 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 915          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.680e-27
Identity = 74/188 (39.36%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FLKHKSDA  A R  +    A +G+   + ++R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:  437 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 622          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.020e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTD-GERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + ++  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R+D G +   G F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:   98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRP 283          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.910e-26
Identity = 70/173 (40.46%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPE-GLKIGVIRTDGERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTVVLLRGVME-----GKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPF 501
            +L G  Q   +GGN + ++  DD TR+  V FLKHKSDA  A    + D  A     ++ V RTDG  E  GQF    R  GIK+E  PP TP+YNGV ERALGLL D  +       E       S  LWAEA++ AC   N   ++      SP EL++G  P   +  PF
Sbjct:  200 NLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.310e-26
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGL--KIGVIRTDGERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV---VLLRGVMEGKSNR--LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPF 501
            DL G  +   +GGN + ++  DDF+R+  V FLKHKSDA       + D +  +G+  ++ + RTDG  E  GQF    R  GIK E  PP+TP+YNGV ERALGL+ D  +   +    +     N   LWAEA++ AC   N   + S + D S YE+++   P   +  PF
Sbjct:   27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLAD-YRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 199          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.510e-26
Identity = 73/188 (38.83%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLL-------RDKTVVLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FLK KSDA +A R  +    A +G+   + ++R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+       R +  VL   V   K++RLWAEAM +AC+  N    S+     SPYE+W+G   +     PF    Y R  +P
Sbjct:  636 DLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRP 821          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.660e-26
Identity = 72/188 (38.30%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:  251 DLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 436          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.860e-26
Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P
Sbjct:  196 DLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRP 381          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A5N6LHD7_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LHD7_9ASTR)

HSP 1 Score: 112 bits (281), Expect = 1.190e-25
Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLKIGVIRTD-GERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTVV-LLRGVMEGKS--NRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGY 516
            DL G  Q   LGGN +  L IDD+TR   V FL  KS   +  +          G KI V+RTD G      +F SF    GIKRE   PYTP++NGVVER     +++T++ + R +++ K   N LWAE +A +  + NR  + ++  DT+P+E WYG +PT  ++  FG + Y
Sbjct:  511 DLCGAMQTPSLGGNLYYFLLIDDYTRMCWVYFLSAKSQTFSKFKAFKAMVETESGYKIKVLRTDRGGEFCSNEFNSFCESNGIKRELTIPYTPEHNGVVER-----KNRTIMEMTRSMLKEKQLPNYLWAEGVATSIYLTNRTLTKAI-KDTTPFEAWYGEKPTVHHLRVFGCITY 680          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.210e-25
Identity = 73/189 (38.62%), Postives = 98/189 (51.85%), Query Frame = 1
Query:    1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFA---PEGLKIGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
            DL G      +GG  + M+  DDFTR   + FLK++SDA  A R  +    A   P  ++I  +R+D   E  G +F S   EL IK+E  P Y+PQYNGV ER LGL+ +  +       VL   V   K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:  318 DLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 503          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE1.670e-2739.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.680e-2739.36Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE3.020e-2737.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE1.910e-2640.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE2.310e-2637.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE3.510e-2638.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE3.660e-2638.30Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE8.860e-2637.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6LHD7_9ASTR1.190e-2538.64Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6H5JV76_9PHAE1.210e-2538.62Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88241contigH-elongata_contig88241:1357..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.1875331-UTR-H-elongata_contig88241:1356..17041622931284.1875331-UTR-H-elongata_contig88241:1356..1704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88241 1357..1704 +
1691679772.9394941-UTR-H-elongata_contig88241:1356..17041691679772.9394941-UTR-H-elongata_contig88241:1356..1704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88241 1357..1704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.2084563-CDS-H-elongata_contig88241:1704..18901622931284.2084563-CDS-H-elongata_contig88241:1704..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88241 1705..1890 +
1691679772.9480684-CDS-H-elongata_contig88241:1704..18901691679772.9480684-CDS-H-elongata_contig88241:1704..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88241 1705..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88241.16354.1prot_H-elongata_contig88241.16354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88241 1705..1890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88241.16354.1

>prot_H-elongata_contig88241.16354.1 ID=prot_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPP
FGTVGYLRRSKP
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mRNA from alignment at H-elongata_contig88241:1357..1890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88241.16354.1 ID=mRNA_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig88241:1357..1890+ (Himanthalia elongata Himel1 dioecious)
GATCTCTCAGGCCCCTTTCAAGAGACGCCTCTCGGAGGAAACAGATTCGT CATGCTGTGCATTGACGACTTCACCCGCTTTAAAATGGTCCGTTTCCTCA AGCACAAGAGCGACGCCACGAATGCGCTAAGAGACATAATCAACGACTGC TTCGCGCCGGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGAGAG AGAATGACACGGCCAGTTCCTATCTTTCCTGCGTGAGCTCGGAATCAAGC GCGAGTCCAAACCCCCATATACCCCCCAATACAATGGCGTCGTGGAGCGC GCTCTGGGGCTACTGCGCGACAAGACCGTGGTCCTGCTGCGAGGTGTAAT GGAGGGTAAAAGCAACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCG ATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGCGACACCTCGCCA TATGAGCTTTGGTACGGCCGACGTCCGACATTCGACAACATTCCCCCATT CGGGACCGTGGGATATCTACGACGGTCAAAGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig88241:1357..1890+

>mRNA_H-elongata_contig88241.16354.1 ID=mRNA_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig88241:1357..1890+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGTAAAAGCAACCGTCTATGGGCGGAAGCTATGGCGTACGCATG
CGATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGCGACACCTCGC
CATATGAGCTTTGGTACGGCCGACGTCCGACATTCGACAACATTCCCCCA
TTCGGGACCGTGGGATATCTACGACGGTCAAAGCCAATGGAGGGTAAAAG
CAACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAACC
GATGCACCTCCTCCTCCCTCGACAGCGACACCTCGCCATATGAGCTTTGG
TACGGCCGACGTCCGACATTCGACAACATTCCCCCATTCGGGACCGTGGG
ATATCTACGACGGTCAAAGCCA
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