mRNA_H-elongata_contig88215.16351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88215.16351.1
Unique NamemRNA_H-elongata_contig88215.16351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: D7FI80_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI80_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 5.620e-68
Identity = 107/132 (81.06%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:    1 TKLTIRVRMTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 396
            T+LT+RVRM+DGSVKRVQ   RDTVEDVCERLGC+ +AGVA+E +PE AVE S TLKELSVGHGGWLYMLRDP   G DTAAAIRRM+EAR RA +GGGVKEVKTL ALQQE+KAAKGMLVVVDFYADWCGP
Sbjct:   37 TELTVRVRMSDGSVKRVQAQARDTVEDVCERLGCEPEAGVAIEEDPEAAVEVSSTLKELSVGHGGWLYMLRDPDDPGADTAAAIRRMKEARTRAIKGGGVKEVKTLKALQQELKAAKGMLVVVDFYADWCGP 168
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: A0A836CNH4_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.190e-40
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:    7 LTIRVRMTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 396
            L +RVR+ DGSVKRV  +P D+V DVCE++ CD + GVA +A+    VE + ++KEL + +G WLY+ RDPA AG   A AI RM++ R+R  +GGGV E  T+A L QE+K A  MLVVVDF+ADWCGP
Sbjct:   45 LVLRVRLPDGSVKRVDASPSDSVADVCEKIDCDYEHGVATDADFANCVEGTSSVKELKLANGAWLYLRRDPAEAGRSNAEAIMRMKKRRERELKGGGVVECLTVAKLDQEIKEAGNMLVVVDFFADWCGP 174
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: A0A7S2UWJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWJ8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.080e-14
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:    4 KLTIRVRMTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYM-LRDPAGAGVDTAAAIRRMREARKRAARGG-GVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 396
            KL +RV+M +G +KRV+  P  T+ D+ +  G + +  ++++ E  E  + S  +K + V HG  LY  + D  G+  D+A+   R+   + R  R G  V     +      VK A   L+VVDFYADWCGP
Sbjct:   37 KLIVRVKMPNGVIKRVEAKPSHTINDIKDMAGLERKKRLSLDEERTELTQGSDVIKRIGVKHGDILYAKMADMDGS--DSASLQARLASTKTRRNRAGTSVPHADNMKDFDMAVKRAGSRLLVVDFYADWCGP 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI80_ECTSI5.620e-6881.06Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A836CNH4_9STRA1.190e-4054.62Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2UWJ8_9STRA6.080e-1434.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88215contigH-elongata_contig88215:320..2538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2.2e-50
Seed eggNOG ortholog2880.D7FI80
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009314,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019220,GO:0019222,GO:0019725,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032879,GO:0032880,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033674,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043549,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045859,GO:0045860,GO:0045937,GO:0046822,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051223,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051896,GO:0051897,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097237,GO:0098754,GO:0098869,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902531,GO:1902533,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903827,GO:1904589,GO:1990748,GO:2001023,GO:2001024,GO:2001038,GO:2001039
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-23_003730.1
Exons5
Model size402
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88215.16351.1prot_H-elongata_contig88215.16351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88215 344..2538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.8593743-UTR-H-elongata_contig88215:319..3431622931283.8593743-UTR-H-elongata_contig88215:319..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88215 320..343 +
1691679772.801527-UTR-H-elongata_contig88215:319..3431691679772.801527-UTR-H-elongata_contig88215:319..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88215 320..343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.8792703-CDS-H-elongata_contig88215:343..4121622931283.8792703-CDS-H-elongata_contig88215:343..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 344..412 +
1691679772.8147385-CDS-H-elongata_contig88215:343..4121691679772.8147385-CDS-H-elongata_contig88215:343..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 344..412 +
1622931283.903151-CDS-H-elongata_contig88215:887..9481622931283.903151-CDS-H-elongata_contig88215:887..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 888..948 +
1691679772.82404-CDS-H-elongata_contig88215:887..9481691679772.82404-CDS-H-elongata_contig88215:887..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 888..948 +
1622931283.9291909-CDS-H-elongata_contig88215:1356..14141622931283.9291909-CDS-H-elongata_contig88215:1356..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 1357..1414 +
1691679772.8337553-CDS-H-elongata_contig88215:1356..14141691679772.8337553-CDS-H-elongata_contig88215:1356..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 1357..1414 +
1622931283.9524395-CDS-H-elongata_contig88215:1700..18301622931283.9524395-CDS-H-elongata_contig88215:1700..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 1701..1830 +
1691679772.844013-CDS-H-elongata_contig88215:1700..18301691679772.844013-CDS-H-elongata_contig88215:1700..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 1701..1830 +
1622931283.972715-CDS-H-elongata_contig88215:2478..25381622931283.972715-CDS-H-elongata_contig88215:2478..2538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 2479..2538 +
1691679772.8564243-CDS-H-elongata_contig88215:2478..25381691679772.8564243-CDS-H-elongata_contig88215:2478..2538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88215 2479..2538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88215.16351.1

>prot_H-elongata_contig88215.16351.1 ID=prot_H-elongata_contig88215.16351.1|Name=mRNA_H-elongata_contig88215.16351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKE
LSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAA
LQQEVKAAKGMLVVVDFYADWCGPW*
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mRNA from alignment at H-elongata_contig88215:320..2538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88215.16351.1 ID=mRNA_H-elongata_contig88215.16351.1|Name=mRNA_H-elongata_contig88215.16351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2219bp|location=Sequence derived from alignment at H-elongata_contig88215:320..2538+ (Himanthalia elongata Himel1 dioecious)
ACCAAGCTCACCATACGCGTTCGAATGACGGATGGGTCGGTCAAGCGTGT
TCAGGTGACTCCGAGGGACACGGTTGAAGACGTCTGCGAGCGGGTGTGTG
TATGGTATTTTTCTTAAACAAAACATGAACTAATTCCAACCCTCCTCCGA
ACATCCACGCCTTCTTTAGCACCGTGAGAGGTGCAGTCCAGGGGACTAAC
TTGTTTCTTCCGGAATTTTGTCTTGAGTAATTGTACATGAAAGTACTCCT
GGTGTCTTAACTGCTTCCGGGGGATTTGGAGATGAGTGGGGAACGGGGGG
GGGTCGCGGTTTTCGTGATACTTAGAGCCGTTTGAGACGCTGTTTGGTCA
CGGCCCACTCGAAGCAGTCTTATGTATGCAGGAGGCAACTCAGCCCGGTT
GCTCTTCCGAGAAACGCAACTCGCCCAAAACAAAGCATTGCACCCGTTCC
CTCCCAAGGTGTGGGCTTGAGTGGTCCACCATATTGCAAGCATACGCATA
CGAATATAGATACGCCTGAGAGGCGATCCCGATCTCGCGTGCCTCGTGGT
TTCCCGCGCTGGTGGCAGTTGGGGTGTGATGTCCAGGCCGGCGTTGCGGT
AGAAGCAGAGCCGGAGGAGGCCGTCGAAGGTGATTGGATGGGTGCCCGAG
CGAGCAGGCCGTCGTCTTGCACGATGATGTCATGATGACGTCATGTAGTG
GACCCATCAGAAGAGTCGACACAAGATATTTTTTCATAAGTAGTCAAGTG
ATAAAGCCGGGGCGTTTCTGGGTTCGTTGTGCCAAGGACCCGAGAACTCG
TCTCATTATATCCTTACTGTTTTATGTGCGTTTTTCTATCTAACTGTTTT
TGTGTATATGTTTTTATGAAAGCTTCCTGTAAGAAGCGATGCGCATCTCG
ACATCGATAACGGCCAAGCGAGCTAGGCGAGCACCGCCGTGGGTCTCTAT
CTCTATATATCTCTCTTTCTCTGTCATAGTCTCTCTCCAACCGCTGCTTG
TTTGCTGGACGTTTGCGCTTTGAATTGACGACGACAGCGTCTTGTACGCT
GAAGGAGTTGTCCGTGGGACACGGAGGGTGGCTTTACATGCTCAGGTGAA
GAGGGCGGCGAAGGTGCCAAAGGGGGAGGAGGAGGGGGGGAGGGCACGCG
AACGATCGACAGTCTGTCACGCGAAAAAAAGCCTCGTGCGTCATCCCTGT
TTTTTTTGTTTCCCCTTGTGCAGCCTTAATCTAGAGTGCACTACCTCACA
CGTTAGCGTCTTCTCGAAACGCTCCGTGTAATCTCTCTTGAAAATGACCA
ACCACGAAACGGCGTTTCGCCTTCTCGCCCGTAAGTATGTCTGGACGGCG
ATAATAACAGCAGTAATCATAAACGTTTCAGGGATCCGGCCGGGGCGGGA
GTCGACACCGCGGCGGCGATTCGGAGGATGAGGGAGGCAAGAAAGAGGGC
GGCGAGGGGTGGAGGCGTAAAGGAAGTGAAGACGTTAGCCGCGCTGCAGC
AAGAGGTCAAGGTACGAGTGTAGTATAATAGTAAGTAATAATAGCGTAGT
GTCTTTTTTGTATTTTGTGTCTATAATAGTACGGTACCCAGTTTTTTTTG
TTTGTTTCTTGTTGTCCCCCCCCCCCCTCTATATTTCACCCTTTTCTCTT
GTCACAGTCTTTCTACCCCTGTCATAATATATATATCCCTGCTATAGTAT
CTCTATCCTTGTCATAGCCTCTCTATCCCTGTCATATAGTATCTTTATCC
CTGTCATAATATATGTATCCCTGTCATAGTCTCTCTCCCGACGGAGAGGC
CTTTCCCCCGCTCTGATCGATTCCATCTGCTTTACTTGAACAGCAATGTA
GTTTTCCTGGATAGATCGATCTGCGCACCGACGGCGCTCGATTCCCCCCC
GGCATTTCCGCCTTTTCTGTTGGATGTTTCTTTGTCTGTCCCTCTATGTC
ATAGTCTCTCCCCTTTCCTCCTCTTGGAATGTCTCGTGAAAGCTTATTTT
GGCAAAGTTCACAGTTCTAGAGCTAAACGTCTTGCGGGCGATGCCTCGAC
ATAGAGATGTACGAACGCCTCCCTTTCGCCCGTTTTTATTTGCCTCGATA
TATATTTATTATTTTTGTTTTACTATTTTTGTTCCCTTTCGTCCTATCGC
TGCTCCAAGGCGGCCAAGGGGATGCTGGTAGTGGTGGATTTCTACGCGGA
TTGGTGCGGGCCATGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig88215:320..2538+

>mRNA_H-elongata_contig88215.16351.1 ID=mRNA_H-elongata_contig88215.16351.1|Name=mRNA_H-elongata_contig88215.16351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig88215:320..2538+ (Himanthalia elongata Himel1 dioecious)
ATGACGGATGGGTCGGTCAAGCGTGTTCAGGTGACTCCGAGGGACACGGT
TGAAGACGTCTGCGAGCGGATGACGGATGGGTCGGTCAAGCGTGTTCAGG
TGACTCCGAGGGACACGGTTGAAGACGTCTGCGAGCGGTTGGGGTGTGAT
GTCCAGGCCGGCGTTGCGGTAGAAGCAGAGCCGGAGGAGGCCGTCGAAGT
TGGGGTGTGATGTCCAGGCCGGCGTTGCGGTAGAAGCAGAGCCGGAGGAG
GCCGTCGAAGCGTCTTGTACGCTGAAGGAGTTGTCCGTGGGACACGGAGG
GTGGCTTTACATGCTCAGCGTCTTGTACGCTGAAGGAGTTGTCCGTGGGA
CACGGAGGGTGGCTTTACATGCTCAGGGATCCGGCCGGGGCGGGAGTCGA
CACCGCGGCGGCGATTCGGAGGATGAGGGAGGCAAGAAAGAGGGCGGCGA
GGGGTGGAGGCGTAAAGGAAGTGAAGACGTTAGCCGCGCTGCAGCAAGAG
GTCAAGGGATCCGGCCGGGGCGGGAGTCGACACCGCGGCGGCGATTCGGA
GGATGAGGGAGGCAAGAAAGAGGGCGGCGAGGGGTGGAGGCGTAAAGGAA
GTGAAGACGTTAGCCGCGCTGCAGCAAGAGGTCAAGGCGGCCAAGGGGAT
GCTGGTAGTGGTGGATTTCTACGCGGATTGGTGCGGGCCATGGTGAGCGG
CCAAGGGGATGCTGGTAGTGGTGGATTTCTACGCGGATTGGTGCGGGCCA
TGGTGA
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