mRNA_H-elongata_contig88177.16346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88177.16346.1
Unique NamemRNA_H-elongata_contig88177.16346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.970e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ GTFNV T A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  I    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:    3 KAREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.040e-23
Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAP-TEEATEGQKVKYIEAL 489
            + R D+++ GTFNVRT A +G N +GH + ++++ C+   CDVIGLQET+R+G   I    Y V + G  +G K K+G +GVG+AIK  + + AG++    ECI+ RL+  R+ I     VTFVV YAP T   T G  V   ++L
Sbjct:  117 KAREDDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSL 262          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.580e-23
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ GTFNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI  RL+  R+ I     +TFVV YAPTE
Sbjct:  142 KAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTE 272          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.400e-22
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ GTFNV T A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:  651 KAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTE 781          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.860e-22
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ G FNVRT A +G   +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:   53 KAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.900e-21
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   76 ELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE--EATEGQKV 471
            +L+ GTFNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    EC + RL+  R+ I     VTFVV YA TE    T G+ V
Sbjct:  819 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDV 954          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.320e-21
Identity = 61/153 (39.87%), Postives = 90/153 (58.82%), Query Frame = 1
Query:   16 EMRKATRMKHRTTRA-------RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R+A R +H T  A       + R  +L+ GTFNVRT A +G N +GH + ++++  +A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I +   V  VV YAPTE
Sbjct:  105 QQREADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTE 257          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.960e-21
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ GTFN+RT   +  N +GH + ++++ C+A  CDV+GLQE +RDG   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:   19 KAREGDLSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 149          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.400e-20
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
            + R  +L+ GTF+VRT   +G N +GH +  +++  +A  CDVIGLQET+R+G   I    Y + + G  +G K K+G  GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:  149 KAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KI90_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI90_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.220e-18
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISI 402
            + R  +L+ G FNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ +L+  R+ +
Sbjct:   82 KAREGDLSFGKFNVRTPAYSGRNPIGHKVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPKLMKVRLQV 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE2.970e-2444.27Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KDU4_9PHAE1.040e-2342.47Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L660_9PHAE2.580e-2343.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE4.400e-2243.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE5.860e-2242.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0W6_9PHAE3.900e-2142.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5A7_9PHAE5.320e-2139.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6P8_9PHAE5.960e-2141.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE2.400e-2041.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KI90_9PHAE7.220e-1839.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88177contigH-elongata_contig88177:1623..2114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.253409-CDS-H-elongata_contig88177:1622..20961622931283.253409-CDS-H-elongata_contig88177:1622..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88177 1623..2096 -
1691679772.4826677-CDS-H-elongata_contig88177:1622..20961691679772.4826677-CDS-H-elongata_contig88177:1622..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88177 1623..2096 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.2707489-UTR-H-elongata_contig88177:2096..21141622931283.2707489-UTR-H-elongata_contig88177:2096..2114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88177 2097..2114 -
1691679772.4981308-UTR-H-elongata_contig88177:2096..21141691679772.4981308-UTR-H-elongata_contig88177:2096..2114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88177 2097..2114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88177.16346.1prot_H-elongata_contig88177.16346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88177 1623..2096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88177.16346.1

>prot_H-elongata_contig88177.16346.1 ID=prot_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MRKATRMKHRTTRARCRLDELTVGTFNVRTEAVNGVNDMGHIDSLLRPCA
ARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIK
GEIVNKAGKDDIAFECINARLLNARISIKYNFVTFVVAYAPTEEATEGQK
VKYIEALN
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mRNA from alignment at H-elongata_contig88177:1623..2114-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88177.16346.1 ID=mRNA_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig88177:1623..2114- (Himanthalia elongata Himel1 dioecious)
CGACGGGGGAAGCGGGAGATGAGGAAGGCCACCCGCATGAAACACAGGAC GACCAGGGCAAGGTGTCGGCTGGACGAACTTACTGTCGGCACGTTCAACG TTCGCACAGAAGCTGTTAACGGCGTCAACGACATGGGTCATATCGATTCC CTCCTGAGACCCTGTGCTGCTAGAGTGTGTGATGTTATTGGACTGCAGGA GACAAAACGGGACGGAGCATCTGAAATAACTGCATCTGAATACAGAGTAT ATTTTTGTGGCGATTACAGCGGGGTCAAAGGAAAAAAGGGGCATTATGGG GTGGGACTAGCGATAAAGGGGGAGATCGTTAACAAGGCCGGCAAGGACGA CATCGCATTCGAGTGCATCAACGCACGTCTTCTGAATGCTCGAATATCGA TTAAATATAATTTTGTTACGTTTGTGGTAGCCTACGCTCCGACTGAGGAA GCGACGGAGGGGCAAAAGGTCAAGTACATTGAAGCCCTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig88177:1623..2114-

>mRNA_H-elongata_contig88177.16346.1 ID=mRNA_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig88177:1623..2114- (Himanthalia elongata Himel1 dioecious)
ATGAGGAAGGCCACCCGCATGAAACACAGGACGACCAGGGCAAGGTGTCG
GCTGGACGAACTTACTGTCGGCACGTTCAACGTTCGCACAGAAGCTGTTA
ACGGCGTCAACGACATGGGTCATATCGATTCCCTCCTGAGACCCTGTGCT
GCTAGAGTGTGTGATGTTATTGGACTGCAGGAGACAAAACGGGACGGAGC
ATCTGAAATAACTGCATCTGAATACAGAGTATATTTTTGTGGCGATTACA
GCGGGGTCAAAGGAAAAAAGGGGCATTATGGGGTGGGACTAGCGATAAAG
GGGGAGATCGTTAACAAGGCCGGCAAGGACGACATCGCATTCGAGTGCAT
CAACGCACGTCTTCTGAATGCTCGAATATCGATTAAATATAATTTTGTTA
CGTTTGTGGTAGCCTACGCTCCGACTGAGGAAGCGACGGAGGGGCAAAAG
GTCAAGTACATTGAAGCCCTCAACATGAGGAAGGCCACCCGCATGAAACA
CAGGACGACCAGGGCAAGGTGTCGGCTGGACGAACTTACTGTCGGCACGT
TCAACGTTCGCACAGAAGCTGTTAACGGCGTCAACGACATGGGTCATATC
GATTCCCTCCTGAGACCCTGTGCTGCTAGAGTGTGTGATGTTATTGGACT
GCAGGAGACAAAACGGGACGGAGCATCTGAAATAACTGCATCTGAATACA
GAGTATATTTTTGTGGCGATTACAGCGGGGTCAAAGGAAAAAAGGGGCAT
TATGGGGTGGGACTAGCGATAAAGGGGGAGATCGTTAACAAGGCCGGCAA
GGACGACATCGCATTCGAGTGCATCAACGCACGTCTTCTGAATGCTCGAA
TATCGATTAAATATAATTTTGTTACGTTTGTGGTAGCCTACGCTCCGACT
GAGGAAGCGACGGAGGGGCAAAAGGTCAAGTACATTGAAGCCCTCAAC
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