mRNA_H-elongata_contig88149.16341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88149.16341.1
Unique NamemRNA_H-elongata_contig88149.16341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.990e-36
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKEWEASNNAAAAKRG 219
            DFPHLANLARRVLAIPATQAESERL SCAGNI TKNRNNLAPTTVELLVLLRHSW IV+EWE SN  AAAKRG
Sbjct:  233 DFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAKRG 305          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.780e-35
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKEWEASNNAAAAKRG 219
            DFPHLANLARRVLAIPATQA+SERL SCAGNI TKNRNNLAPTTVELLVLLRHSW IV+EWE SN  AAA RG
Sbjct:  153 DFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAMRG 225          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKEWEAS 192
            ++P LA LARRVLAIP++QA+SER+ S AG   T  R+ L    VELLV LR+ W +V EW+ S
Sbjct:  493 EYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 60.8 bits (146), Expect = 2.680e-9
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 FPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLL 153
            FPHL+++AR++L IPAT   SER+ S AG I TK R NL P  V++LV L
Sbjct:   79 FPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFL 128          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A094DPG2_9PEZI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094DPG2_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 2.970e-9
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKE 180
             +P +A++A+  LAIPAT A+SER+ S  G+I TK RN L+P+T+  L+ LR+ W I+ +
Sbjct:   22 QYPLIASIAKDYLAIPATSADSERVFSVGGDIITKKRNQLSPSTLRYLLCLRN-WGILSQ 80          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: R7TXQ1_CAPTE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TXQ1_CAPTE)

HSP 1 Score: 58.5 bits (140), Expect = 3.670e-9
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHS 162
            +FP +A LA++ LAIPAT A SER+ S AGNI T  R+ L P  V +LV L H+
Sbjct:    5 NFPRIALLAKKYLAIPATSAPSERVFSTAGNIVTPKRSRLNPEKVNMLVFLAHN 58          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A094G1R4_9PEZI (Uncharacterized protein n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094G1R4_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 4.280e-9
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKEWEAS 192
             +P LA +A+  LAIPAT AESER+ S  G+I TK RN LAP+T+  L+ LR+ W +V   E S
Sbjct:  748 QYPILAAIAKDHLAIPATSAESERVFSVGGDIITKKRNRLAPSTLRYLICLRN-WGVVSPGEDS 810          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: U9UJJ0_RHIID (Dimer_Tnp_hAT domain-containing protein (Fragment) n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9UJJ0_RHIID)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-8
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRH 159
            ++PHLAN+A+  L +PAT A SER+ S A ++ T +R +LAP TV  ++ L+H
Sbjct:    4 EYPHLANMAKDYLGVPATSAPSERIFSSAADVITYDRASLAPETVRSVMCLKH 56          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A2P6FGM7_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus destructans TaxID=655981 RepID=A0A2P6FGM7_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 1.680e-8
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKE 180
             +P +A++A+  LAIPAT A+SER+ S  G+I TK RN L+P+T+  L+ LR+ W I+ +
Sbjct:  108 QYPLIASIAKDHLAIPATSADSERVFSVGGDIITKKRNRLSPSTLRYLLCLRN-WGIISQ 166          
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Match: A0A094E365_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4516 (FW-969) TaxID=1420910 RepID=A0A094E365_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 2.090e-8
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVLLRHSWNIVKEWEASNNA 201
             +P LA + +  LAIPAT AES+RL S  G+I TK RN L+P+T+  L+ LR+ W ++      + A
Sbjct:   17 QYPILARIVKDHLAIPATSAESKRLFSIGGDIVTKKRNRLSPSTLRYLLCLRN-WGVLSPGNEEDGA 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88149.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE3.990e-3690.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE1.780e-3587.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI1.540e-1154.69Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1X7SR93_AMPQE2.680e-956.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A094DPG2_9PEZI2.970e-946.67Dimer_Tnp_hAT domain-containing protein n=3 Tax=un... [more]
R7TXQ1_CAPTE3.670e-953.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ca... [more]
A0A094G1R4_9PEZI4.280e-951.56Uncharacterized protein n=1 Tax=Pseudogymnoascus s... [more]
U9UJJ0_RHIID1.140e-847.17Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A2P6FGM7_9PEZI1.680e-846.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094E365_9PEZI2.090e-843.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88149contigH-elongata_contig88149:2279..2650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2.9e-10
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931282.5968132-CDS-H-elongata_contig88149:2278..25001622931282.5968132-CDS-H-elongata_contig88149:2278..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88149 2279..2500 +
1691679772.248555-CDS-H-elongata_contig88149:2278..25001691679772.248555-CDS-H-elongata_contig88149:2278..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88149 2279..2500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931282.6321316-UTR-H-elongata_contig88149:2500..26501622931282.6321316-UTR-H-elongata_contig88149:2500..2650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88149 2501..2650 +
1691679772.264595-UTR-H-elongata_contig88149:2500..26501691679772.264595-UTR-H-elongata_contig88149:2500..2650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88149 2501..2650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88149.16341.1prot_H-elongata_contig88149.16341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88149 2279..2500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88149.16341.1

>prot_H-elongata_contig88149.16341.1 ID=prot_H-elongata_contig88149.16341.1|Name=mRNA_H-elongata_contig88149.16341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
DFPHLANLARRVLAIPATQAESERLISCAGNIFTKNRNNLAPTTVELLVL
LRHSWNIVKEWEASNNAAAAKRG*
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mRNA from alignment at H-elongata_contig88149:2279..2650+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88149.16341.1 ID=mRNA_H-elongata_contig88149.16341.1|Name=mRNA_H-elongata_contig88149.16341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig88149:2279..2650+ (Himanthalia elongata Himel1 dioecious)
GACTTCCCGCACTTGGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGC CACTCAGGCAGAGTCCGAGCGTCTGATCTCCTGCGCTGGAAACATCTTCA CGAAGAATCGCAACAACTTGGCCCCCACCACCGTTGAGCTTCTCGTCCTC CTGCGCCACTCGTGGAATATAGTGAAGGAATGGGAAGCATCGAACAACGC CGCGGCCGCGAAGAGGGGCTAGGGTAGTGGCTGTCTTTGCTTGGGAGGAT TTCTGGGGGGTTTTCTCTCCTAAAGGGTGCTGATAGCGAAAAGAATCGCC ATCCAATGACTCTGCTTGTTGTGCTGGTACATAGCGGCTGTAATTTGTGC GCGGTGCAGGTTTCGGTTGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig88149:2279..2650+

>mRNA_H-elongata_contig88149.16341.1 ID=mRNA_H-elongata_contig88149.16341.1|Name=mRNA_H-elongata_contig88149.16341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig88149:2279..2650+ (Himanthalia elongata Himel1 dioecious)
GACTTCCCGCACTTGGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGC
CACTCAGGCAGAGTCCGAGCGTCTGATCTCCTGCGCTGGAAACATCTTCA
CGAAGAATCGCAACAACTTGGCCCCCACCACCGTTGAGCTTCTCGTCCTC
CTGCGCCACTCGTGGAATATAGTGAAGGAATGGGAAGCATCGAACAACGC
CGCGGCCGCGAAGAGGGGCTAGGACTTCCCGCACTTGGCCAACCTCGCCC
GCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGATC
TCCTGCGCTGGAAACATCTTCACGAAGAATCGCAACAACTTGGCCCCCAC
CACCGTTGAGCTTCTCGTCCTCCTGCGCCACTCGTGGAATATAGTGAAGG
AATGGGAAGCATCGAACAACGCCGCGGCCGCGAAGAGGGGCTAG
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