mRNA_H-elongata_contig88149.16339.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 269 bits (688), Expect = 2.520e-82 Identity = 150/193 (77.72%), Postives = 164/193 (84.97%), Query Frame = 3
Query: 27 AQVPVSQRRNCVTTMRTVKTAMMKKVSRLIKSEYVCITSDGWTSCANDTYMSLT----------VTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLE-EGDVCTQIGCCNHRLESTT-IVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMAT 569
A+VP ++++CVTTMRTVK MM+KVSRLI+ E VCITSDGWTSCANDTYMSLT VTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGK+TAVTTD EPSMVKMGRLL + V TQIGCCN+RLEST+ IVFNGP VKKV+ LARGLVTRY TSSQAAD LKQFVKTYLG +NKRVIQD+ T
Sbjct: 9 ARVP--EKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 164 bits (415), Expect = 7.830e-45 Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = 3
Query: 27 AQVPVSQRRNCVTTMRTVKTAMMKKVSRLIKSEYVCITSDGWTSCANDTYMSLTVT----------LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLES-TTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
++ V +R + +R +K + ++V + E+V +TSDGWTS +NDTYM T T L V+C K G TTG+ L +KA +A++GLT + A TTD EPSMVK GRLLEE + T +GC HRLES T+ F GPGV K + LAR +VTRY+ SSQA+D L+Q ++ + E K+V+QD+ TRWWST + + R
Sbjct: 16 SRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICR 217
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 158 bits (399), Expect = 5.020e-42 Identity = 101/204 (49.51%), Postives = 130/204 (63.73%), Query Frame = 3
Query: 27 AQVPVSQRRNCVTTMRTVKTAMMKKVSRLIKSEYVCITSDGWTSCANDTYMSLTVT----------LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLE-EGDVCTQIGCCNHRLESTTI-VFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
A+VP RR ++ MR VKTA+ +V+ ++ +E+V IT+DGWTS N++YMSLTV LS+DC+K GTTTG+ LAA + V +H LTG++ A TD EPSM+K GRLLE +G + IGC NHR+ESTT VFNG + + LAR LV RY SSQ A L Q L E V+QD+ TRWWST +MV R
Sbjct: 9 AKVP--SRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVR 208
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 154 bits (388), Expect = 1.110e-39 Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 3
Query: 123 EYVCITSDGWTSCANDTYMSLTVT----------LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLES-TTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
E+V +TSDGWT +NDTYMS T T L ++C K T G+ L +KA +A++GLTG+ A+TTD E SMVK GRLLEE + T +GC HRLES T+ F GPGV K + LARG+VTRY+ SSQA+D L+Q V + E K V+QD+ TRWWST + R
Sbjct: 4 EHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICR 173
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.000e-37 Identity = 92/204 (45.10%), Postives = 126/204 (61.76%), Query Frame = 3
Query: 27 AQVPVSQRRNCVTTMRTVKTAMMKKVSRLIKSEYVCITSDGWTSCANDTYMSLTVT----------LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQ-IGCCNHRLESTTI-VFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
A+ P+ RR V MR +K + +V+ ++ EYV IT+DGWTS +N++YMSLTV LS++C+K G+T G+ LA I + + +HGLTG++TA TD EPSMVK GRLLE G + IGC NHR+ESTT VFNG + + AR +V RY SSQ + L F+ L V+QD+ TRWWS+ +M+ R
Sbjct: 45 ARAPI--RRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIER 244
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.630e-32 Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 3
Query: 156 SCANDTYMSLTVT----------LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLES-TTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWST 584
S +NDTYM+ T T L ++ K G TTG+ L +KA +A++GLTG+ A TTD EP MVK GRLLEE + + +GC HR ES T+ F GPGV K + L RG+VTRY+ SSQA++ L+Q + E K+V+QD+ TRWWST
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWST 155
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6G0HG17_LARCR (DUF659 domain-containing protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HG17_LARCR) HSP 1 Score: 65.5 bits (158), Expect = 4.980e-9 Identity = 55/181 (30.39%), Postives = 90/181 (49.72%), Query Frame = 3
Query: 93 MKKVSRLIKSEYVCITSDGWTSCANDTYMSLT---VTLSVDCSKS-------EGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLE-STTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
M V + +++ V IT DGWTSCA D+Y+++T VT D + TG LAA ++ + + +T K A+ TD +MV G DV + C H L ++ V +++ R +VT + S QAA+ L++ +++ L N ++I D+ TRW S+ M+ R
Sbjct: 105 MDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLER 281
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: A0A6G0HEN4_LARCR (HECT domain-containing protein n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HEN4_LARCR) HSP 1 Score: 65.5 bits (158), Expect = 5.920e-9 Identity = 55/181 (30.39%), Postives = 90/181 (49.72%), Query Frame = 3
Query: 93 MKKVSRLIKSEYVCITSDGWTSCANDTYMSLT---VTLSVDCSKS-------EGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLE-STTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
M V + +++ V IT DGWTSCA D+Y+++T VT D + TG LAA ++ + + +T K A+ TD +MV G DV + C H L ++ V +++ R +VT + S QAA+ L++ +++ L N ++I D+ TRW S+ M+ R
Sbjct: 105 MDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLER 281
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: UPI000F601F68 (zinc finger BED domain-containing protein 1-like n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F601F68) HSP 1 Score: 64.3 bits (155), Expect = 1.040e-8 Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 3
Query: 93 MKKVSRLIKSEYVCITSDGWTSCANDTYMSLT---VTLSVDCSKS-------EGTTTGDALAAGIKATVAKHGLTGKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLE-STTIVFNGPGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMVAR 602
M V + +++ V IT DGWTSCA D+Y+++T VT D + TG LAA ++ + + +T K A+ TD +MV G D+ + C H L ++ V +++ R +VT + S QAA+ L++ +++ L N ++I D+ TRW S+ M+ R
Sbjct: 1 MDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADLTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLER 177
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Match: UPI00096AF313 (zinc finger BED domain-containing protein 1-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AF313) HSP 1 Score: 64.3 bits (155), Expect = 1.380e-8 Identity = 57/187 (30.48%), Postives = 90/187 (48.13%), Query Frame = 3
Query: 81 KTAMMKKVSRLIKSEYVCITSDGWTSCANDTYMSLT----------VTLSVDCSKSEGTTTGDALAAGIKATVAKHGLT--GKITAVTTDYEPSMVKMGRLLEEGDVCTQIGCCNHRLESTTIVFNG---PGVKKVITLARGLVTRYSTSSQAADWLKQFVKTYLGFENKRVIQDMATRWWSTCSMV 596
K AMM+++ ++ + TSD WTSCAND Y+SLT V+ + S G TG + +K G ++ A+ D +MV G +LEE C + C HRL+ + +G + + + A+ LVT + S+ A+D LK+ + +G ++ QD TRW ST M+
Sbjct: 173 KRAMMQRLKN--ENAFTAFTSDIWTSCANDAYISLTAHFIDSDWQLVSCVLGSSPFPGHHTGSHIYEKLKDITHAFGFQQHSQLVALVHDAASNMVLSGEILEERLECASVCCAAHRLQ--LCIEDGLSVSAISRAVGAAKKLVTHFRHSALASDALKK-KQLDMGKPVMKLQQDCPTRWNSTFYMI 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88149.16339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88149.16339.1 >prot_H-elongata_contig88149.16339.1 ID=prot_H-elongata_contig88149.16339.1|Name=mRNA_H-elongata_contig88149.16339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp MTYAQVPVSQRRNCVTTMRTVKTAMMKKVSRLIKSEYVCITSDGWTSCANback to top mRNA from alignment at H-elongata_contig88149:852..1453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88149.16339.1 ID=mRNA_H-elongata_contig88149.16339.1|Name=mRNA_H-elongata_contig88149.16339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=602bp|location=Sequence derived from alignment at H-elongata_contig88149:852..1453+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88149:852..1453+ >mRNA_H-elongata_contig88149.16339.1 ID=mRNA_H-elongata_contig88149.16339.1|Name=mRNA_H-elongata_contig88149.16339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig88149:852..1453+ (Himanthalia elongata Himel1 dioecious)back to top |