mRNA_H-elongata_contig87939.16326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87939.16326.1
Unique NamemRNA_H-elongata_contig87939.16326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87939.16326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87939contigH-elongata_contig87939:597..948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.0153513-CDS-H-elongata_contig87939:596..8991622931281.0153513-CDS-H-elongata_contig87939:596..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87939 597..899 +
1691679771.6769507-CDS-H-elongata_contig87939:596..8991691679771.6769507-CDS-H-elongata_contig87939:596..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87939 597..899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.03326-UTR-H-elongata_contig87939:899..9481622931281.03326-UTR-H-elongata_contig87939:899..948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87939 900..948 +
1691679771.6852832-UTR-H-elongata_contig87939:899..9481691679771.6852832-UTR-H-elongata_contig87939:899..948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87939 900..948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87939.16326.1prot_H-elongata_contig87939.16326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87939 597..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87939.16326.1

>prot_H-elongata_contig87939.16326.1 ID=prot_H-elongata_contig87939.16326.1|Name=mRNA_H-elongata_contig87939.16326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
SLPTASLPYQLPTPSTIFNIIIYKKHLEQWCWEDKVQPCGTSCSNTKQFS
IAHNDAFRPFYPITYHRLLLSTTGCTCVPNQHIPRFQQCRDKEILYHTIP
*
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mRNA from alignment at H-elongata_contig87939:597..948+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87939.16326.1 ID=mRNA_H-elongata_contig87939.16326.1|Name=mRNA_H-elongata_contig87939.16326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=352bp|location=Sequence derived from alignment at H-elongata_contig87939:597..948+ (Himanthalia elongata Himel1 dioecious)
TCCCTACCAACTGCCTCTCTTCCCTACCAACTACCAACTCCCTCGACGAT
TTTCAACATCATAATATATAAAAAACACCTGGAACAATGGTGTTGGGAAG
ACAAGGTGCAACCTTGTGGAACCTCCTGCTCAAATACCAAACAATTTTCT
ATCGCACACAACGACGCTTTTCGGCCATTCTACCCTATTACATATCATAG
ACTACTATTATCAACGACAGGATGCACTTGTGTCCCCAACCAACATATAC
CACGATTCCAGCAATGCCGGGACAAGGAGATATTATACCATACCATACCA
TAACACGTTTGCGACGCCAACATATATATATATATATATAATTGTACGCT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig87939:597..948+

>mRNA_H-elongata_contig87939.16326.1 ID=mRNA_H-elongata_contig87939.16326.1|Name=mRNA_H-elongata_contig87939.16326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig87939:597..948+ (Himanthalia elongata Himel1 dioecious)
TCCCTACCAACTGCCTCTCTTCCCTACCAACTACCAACTCCCTCGACGAT
TTTCAACATCATAATATATAAAAAACACCTGGAACAATGGTGTTGGGAAG
ACAAGGTGCAACCTTGTGGAACCTCCTGCTCAAATACCAAACAATTTTCT
ATCGCACACAACGACGCTTTTCGGCCATTCTACCCTATTACATATCATAG
ACTACTATTATCAACGACAGGATGCACTTGTGTCCCCAACCAACATATAC
CACGATTCCAGCAATGCCGGGACAAGGAGATATTATACCATACCATACCA
TAATCCCTACCAACTGCCTCTCTTCCCTACCAACTACCAACTCCCTCGAC
GATTTTCAACATCATAATATATAAAAAACACCTGGAACAATGGTGTTGGG
AAGACAAGGTGCAACCTTGTGGAACCTCCTGCTCAAATACCAAACAATTT
TCTATCGCACACAACGACGCTTTTCGGCCATTCTACCCTATTACATATCA
TAGACTACTATTATCAACGACAGGATGCACTTGTGTCCCCAACCAACATA
TACCACGATTCCAGCAATGCCGGGACAAGGAGATATTATACCATACCATA
CCATAA
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