mRNA_H-elongata_contig87935.16325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87935.16325.1
Unique NamemRNA_H-elongata_contig87935.16325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87935.16325.1 vs. uniprot
Match: D8LLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.320e-18
Identity = 57/124 (45.97%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:    1 GVEGPHPYWPQDEFHAYRAQPPSTY--QQSSVLPLSSTPIPSDDRHINTSKKGNSAATKT--------RFPSLAPTL----GSFRVSGDARAAEAVARARKTWAPPALRTQAVASYGAVPDLEV 330
            G EGP P  P   F +Y AQPP++   + +S+ P         +RH  T+                  RFPSL P L    G+F  +GD RAAEAVA+ARKTWAPP LRT+A+ASYGAVPDLE+
Sbjct:   63 GPEGP-PELPLSNFQSYHAQPPASIPDRHASLPP---------ERHQGTNSXXXXXXXXXXXXXXXXXRFPSLTPALAPAPGTFSANGDTRAAEAVAQARKTWAPPVLRTKAIASYGAVPDLEI 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87935.16325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLN8_ECTSI3.320e-1845.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87935contigH-elongata_contig87935:188..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005050.1
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931280.9626386-CDS-H-elongata_contig87935:187..5201622931280.9626386-CDS-H-elongata_contig87935:187..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87935 188..520 -
1691679771.6681912-CDS-H-elongata_contig87935:187..5201691679771.6681912-CDS-H-elongata_contig87935:187..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87935 188..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87935.16325.1prot_H-elongata_contig87935.16325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87935 188..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87935.16325.1

>prot_H-elongata_contig87935.16325.1 ID=prot_H-elongata_contig87935.16325.1|Name=mRNA_H-elongata_contig87935.16325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
GVEGPHPYWPQDEFHAYRAQPPSTYQQSSVLPLSSTPIPSDDRHINTSKK
GNSAATKTRFPSLAPTLGSFRVSGDARAAEAVARARKTWAPPALRTQAVA
SYGAVPDLEV*
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mRNA from alignment at H-elongata_contig87935:188..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87935.16325.1 ID=mRNA_H-elongata_contig87935.16325.1|Name=mRNA_H-elongata_contig87935.16325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig87935:188..520- (Himanthalia elongata Himel1 dioecious)
GGGGTGGAAGGCCCACACCCGTACTGGCCACAGGACGAGTTCCATGCCTA
CCGCGCCCAACCCCCGTCGACGTACCAACAATCATCGGTGTTACCGTTGT
CGTCAACGCCGATTCCGTCGGACGATCGACATATTAATACGAGTAAAAAG
GGCAACAGCGCCGCCACGAAAACGCGATTCCCGTCCCTAGCGCCGACGCT
CGGGTCTTTCCGCGTGTCCGGGGACGCGAGGGCGGCAGAGGCCGTTGCGC
GCGCGCGAAAAACCTGGGCGCCGCCGGCGCTTCGGACTCAAGCGGTGGCC
TCTTACGGAGCCGTCCCAGATCTAGAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig87935:188..520-

>mRNA_H-elongata_contig87935.16325.1 ID=mRNA_H-elongata_contig87935.16325.1|Name=mRNA_H-elongata_contig87935.16325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig87935:188..520- (Himanthalia elongata Himel1 dioecious)
GGGGTGGAAGGCCCACACCCGTACTGGCCACAGGACGAGTTCCATGCCTA
CCGCGCCCAACCCCCGTCGACGTACCAACAATCATCGGTGTTACCGTTGT
CGTCAACGCCGATTCCGTCGGACGATCGACATATTAATACGAGTAAAAAG
GGCAACAGCGCCGCCACGAAAACGCGATTCCCGTCCCTAGCGCCGACGCT
CGGGTCTTTCCGCGTGTCCGGGGACGCGAGGGCGGCAGAGGCCGTTGCGC
GCGCGCGAAAAACCTGGGCGCCGCCGGCGCTTCGGACTCAAGCGGTGGCC
TCTTACGGAGCCGTCCCAGATCTAGAGGTATGAGGGGTGGAAGGCCCACA
CCCGTACTGGCCACAGGACGAGTTCCATGCCTACCGCGCCCAACCCCCGT
CGACGTACCAACAATCATCGGTGTTACCGTTGTCGTCAACGCCGATTCCG
TCGGACGATCGACATATTAATACGAGTAAAAAGGGCAACAGCGCCGCCAC
GAAAACGCGATTCCCGTCCCTAGCGCCGACGCTCGGGTCTTTCCGCGTGT
CCGGGGACGCGAGGGCGGCAGAGGCCGTTGCGCGCGCGCGAAAAACCTGG
GCGCCGCCGGCGCTTCGGACTCAAGCGGTGGCCTCTTACGGAGCCGTCCC
AGATCTAGAGGTATGA
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