mRNA_H-elongata_contig879.16319.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: D8LJN1_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN1_ECTSI) HSP 1 Score: 343 bits (881), Expect = 1.790e-108 Identity = 209/436 (47.94%), Postives = 270/436 (61.93%), Query Frame = 2
Query: 458 MAPGL----RGGMQNFGSGRG-----RHRNPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVASALNL-VAVSVFGNPRP-SYTYSSGSTGSRAPTSARDGDMRRHGSGSASGIARRVQTAHSSAFAGD---EAEEAAFQEALRRSMLDTGPRGANGAGSTRGEQGRMGHG---------GDTPITNVESYRVTPSAPSEEVEWSVESEGGTGIGTAELRRRRLQRM 1696
+ PGL RGGM+++G + R PW ++L L+LV +I L KPPLTLALMAGM+ALHL P++ + G G S W++ G+ +HI+ +CLLPAS+L+ Y+RTG + RR +S F+HG + HLYYNM SFLLKGVSLEL MGT+A+ GLL+F L+ SQ L ++++W++LVVF+ PS M+AC VGFSGV+FALKYVL+RRSP T VMGF +HTRYA WLELVLI MVPNASFLGHLCGI AG+LYVEVP V +NL +S++ N R SYTY+SG++G +P AR R+ +A+ D EAEEAA QEALRRS+LD+ RG + R + G GD + E P+AP E GG I ELRRRRL+R+
Sbjct: 4 LGPGLGRLPRGGMRDYGGXXXXXXXXQRRRPWALILALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRK-------GVFEWS---WLTGGF-DHIRNVCLLPASILDTYERTGEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSPGVTSVMGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVVNLFTGISLYNNRRGRSYTYNSGTSGRASPEGARR-------------ETRQQSPNPPAAYDIDSDPEAEEAALQEALRRSLLDS-TRGGGAGDNLRRDNGNSAADNPGSRSRPIGDDAVAATEFLGPAPTAPPPEENAGGYGAGGGEIAPDELRRRRLRRL 414
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A024TVC7_9STRA (Rhomboid domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVC7_9STRA) HSP 1 Score: 162 bits (411), Expect = 9.720e-42 Identity = 108/306 (35.29%), Postives = 153/306 (50.00%), Query Frame = 2
Query: 476 GGMQNFGSGRGRHRNPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNH-----IQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYV----EVPAVASALNLVAVSVFGNPRPSYTYSSGSTGSRAPTSARDGDMRR 1366
G M GRG N ++L +QL+ +I L RKPP+TL LM GM L L Y H ++ L P ++E Y + R +SAFLH E HLY NM SFL KGV LE +G+ + ++ LV S L +V ++I+ S ++ C +GFS V+FALK VLN+RSP Y+ ++G T+YAAW+ELV + + VP +SF+GH+ GI AG LY+ VP A+ + G RP+YTY+SG + P++ D + R
Sbjct: 8 GNMPRHPGGRGLRNNGVLLMLAMQLLGQIQQLERKPPVTLLLMGGMVGLFL---------------------------------YQGHPGIPTARKYALCPDIIVEKYALS------RLIVSAFLHVDEWHLYNNMASFLWKGVQLEFHVGSERFARMIGVLLVMSHVLAVVVAYILSTFMGNSSYIHQCAIGFSAVLFALKVVLNQRSPTYSTILGISFPTKYAAWVELVYLHYFVPGSSFVGHIAGIAAGYLYLYGLSAVPTRATTIP------GGTRRPAYTYASGRATNSTPSTESDEEYAR 268
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A813AIL7_9DINO (RBL14 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AIL7_9DINO) HSP 1 Score: 157 bits (398), Expect = 8.490e-41 Identity = 96/230 (41.74%), Postives = 125/230 (54.35%), Query Frame = 2
Query: 545 QLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEV 1234
QL +I +LP KPPLTLALM +H +P +S G +Q CL PA+M+ Q L S FLHG + HLYYNM S L KGV +E MG ++ ++AF V SQAL++ W+ L +C VGFSGV+F LK +LN SP T V G+++ T+YAAW EL+LIQ + P+ASF GHLCGI AG+LY+ V
Sbjct: 5 QLAAQINNLPVKPPLTLALMGLQVLIHYSP---------------------------MSLGVVVDLQRQCLNPAAMVLKRQWFRGLA------SPFLHGDDWHLYYNMASLLWKGVQIEPHMGPLSFGIMVAFLTVVSQALYIAVGWLALTGAGYGGIWSSCAVGFSGVLFGLKAILNAHSPTETVVWGWRLPTKYAAWAELLLIQLVTPHASFTGHLCGILAGLLYLVV 201
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A225X2V2_9STRA (Serine protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2V2_9STRA) HSP 1 Score: 159 bits (401), Expect = 8.510e-40 Identity = 102/281 (36.30%), Postives = 150/281 (53.38%), Query Frame = 2
Query: 446 FGPRMAPGLRGGMQNFGSGRGRHRNPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHL----APEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVASALNLVAVSV 1276
FGP + R G N G R+ + L L LV++I L RKPP+TL LMA M +H PE+ + LC P +L + T R SA +HG + HLY+NM SFL KG +LE +G+ + + + L+ L +V + ++ F+ P ++ C+VGFSGV+FALK +LN SPAY+ V GF++ T+YAAWLELV+I F+VP +SF+GH+CGI AG ++V PA+ +A++ A ++
Sbjct: 2 FGPNVG---RRGRANVG------RDGQGVALMLMLVRQIQQLERKPPVTLGLMALMYGIHFQKTQTPELFAPY-------------------------------SLC--PDRVLSHWDWT------RIVASALIHGDDWHLYHNMVSFLWKGYNLEYKLGSVRFLLTVGYLLLLCHVLVVVVALVLATRFQMPGPLHQCSVGFSGVLFALKVLLNHNSPAYSSVYGFQVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIFVFSPAMQTAMSTGAHTI 234
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A2R6WSK1_MARPO (RanBP2-type domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WSK1_MARPO) HSP 1 Score: 159 bits (402), Expect = 9.110e-40 Identity = 99/249 (39.76%), Postives = 131/249 (52.61%), Query Frame = 2
Query: 503 RGRHR-----NPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYA-CTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVE 1231
RGR+R N +L L + + LPRKPP+T L+ T +HL P V++ L T +QE+CL P +L+ + RR LSAF H + HL YNM S L KGV LE MG++ + G++ L S L +V++ + + P MY+ C VGFS V+FALK VLN SP YT V G I +RYAAW EL IQ VP SFLGHLCG+ AG++Y+
Sbjct: 3 RGRNRRVGGGNGMLYMLALHAASQFMQLPRKPPVTATLILANTIVHLRPGVLDLVLPT--------------------------VQEVCLNPYRVLKDWDA------RRLLLSAFYHVDDAHLVYNMISLLWKGVQLEGSMGSKKFAGMVGVLLGLSHGLVVVSAKFLYSFADNPGPMYSECAVGFSAVLFALKMVLNWNSPDYTNVYGVLIPSRYAAWAELFFIQMFVPGTSFLGHLCGVVAGLIYIN 219
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A482UPC4_9ARCH (Rhomboid family intramembrane serine protease (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPC4_9ARCH) HSP 1 Score: 155 bits (392), Expect = 1.360e-39 Identity = 88/250 (35.20%), Postives = 141/250 (56.40%), Query Frame = 2
Query: 503 RGRHRNPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQP--SAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVA 1246
R H +P + L +Q++ ++ LP KPP+TL L+A H+ P+ FL S ++++ C+ P+ ++ + ++ + R L+ F+H + HLYYNM S L KGV LE G+ + L+ + L+ S L +V S+++ V + S+ +C +GFS V+F+LKYVLN+ SPAYT ++GF++ +++AAW ELVL + P SF+GHL GI AG LYV + +VA
Sbjct: 10 RSPHVSPVVVSLLIQILSQLEKLPYKPPVTLGLLAMNIIAHIHPDPY---------------FLDYSL---------TNVRQNCIWPSLIVSSLTNNHSILWNRIVLAGFMHADDMHLYYNMLSLLWKGVQLEQQFGSFQFGILVVYSLLASHILLVVMSYVVYAVTQNIHISSYDSCAIGFSAVLFSLKYVLNQNSPAYTSILGFQVPSKWAAWAELVLASLLSPQVSFIGHLAGILAGYLYVHMDSVA 235
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A6A4D013_9STRA (Rhomboid domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D013_9STRA) HSP 1 Score: 157 bits (398), Expect = 2.060e-39 Identity = 96/253 (37.94%), Postives = 140/253 (55.34%), Query Frame = 2
Query: 530 IVLGLQLVQKIVDLPRKPPLTLALMAGMTALHL----APEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVASALNLVAVSV 1276
+ L L LV++I L RKPP+TL LMA M LH PE+ F LC P +L + ++R S +H + HLY+NM SFL KG +LE +G+ + + + LV L ++ + I+ F+ P+ ++ C+VGFSGV+FALK +LN SPA++ V GF++ T+YAAWLELV+I F+VP +SF+GH+CGI AG ++V PA+ SA+ VA +V
Sbjct: 24 LALMLMLVRQIQQLERKPPVTLGLMALMYGLHFQKNQTPELFAPF-------------------------------SLC--PDRVLSNWD------WKRLVASGLIHVDDWHLYHNMISFLWKGCNLEYKLGSVRFLLTVGYLLVLCHVLVVMVALILATGFQMPAPLHQCSVGFSGVLFALKVLLNHNSPAFSSVYGFQVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIFVYSPAMQSAMTSVARAV 237
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A836CHG7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG7_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.250e-39 Identity = 132/354 (37.29%), Postives = 183/354 (51.69%), Query Frame = 2
Query: 497 SGRGRHRNPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMG-FKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVAS--ALNLVAVSV----------FGNPRPSYTYSSGSTGSRAPTSARDGDMRRHGSGS-ASGIARRVQTAHSSAFAGDEAEEAAFQEALRRSMLDTGPRGANGA 1516
SGR R NP+ + L L+ + + LP KPP T L+A +HL P + L PA R + Y+ ++CL PA +++ G + R F SA +HG + HL+YNM S L+KGVSLE MGT A+ L+ F S L +V + + + P +C VGFS V+FALKYV R PA +G F I +R+A+W EL+LIQ +VPNASFLGHLCGI AG+L+V AV + A L + V +G YTY+ G++G+ A + A G A + S+AF ++A+ A QEALRRS+ + GA GA
Sbjct: 5 SGRQRTGNPYATGVALDLLNRFLQLPYKPPFTCFLIALNACIHLYPAALAGVL---PA-------------RLLFGDYT----KVCLKPAKVVKELLN-GEVDAVRLFGSALIHGDDLHLWYNMGSLLMKGVSLETTMGTPAFALLVVFLWALSHTLVVVVALASVYLGFDPG-FNSCMVGFSAVLFALKYVAAFREPARPTPVGYFLIDSRWASWAELILIQVVVPNASFLGHLCGILAGVLWVHGGAVVAYTAKTLAPLGVGRGGPGAYDTYGGRGSRYTYARGTSGTAAAXXXXXXXXXXXRPPAFAPGAA-----SDSAAFEVEDAD-AQLQEALRRSLEEVRLGGAAGA 330
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A2K1JBZ4_PHYPA (RanBP2-type domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JBZ4_PHYPA) HSP 1 Score: 156 bits (394), Expect = 1.130e-38 Identity = 91/245 (37.14%), Postives = 132/245 (53.88%), Query Frame = 2
Query: 518 NPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYA-CTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYVEVPAVAS 1249
N ++ + ++ PRKP +T AL+A T +HL P ++ L T + E+CL P +++ +R +LSA H E HL YNM S KG+ LE MG++ Y ++A L S +L + +S + + + P++ Y+ C+VGFSGV+FALK VLN SP +T V G + +RYAAW+EL++IQ VP SFLGHLCGI AG++YV P V S
Sbjct: 11 NSMLYMMAMHAATNLLQQPRKPVVTAALIAAQTLIHLRPGKLDAILPT--------------------------LSEVCLNPYFVVKNRD------LKRLWLSALYHVDETHLVYNMISLTWKGIQLENSMGSQNYAAMVAVLLGLSSSLVVASSSFLAFIADSPTSFYSECSVGFSGVLFALKVVLNYNSPTHTNVYGILVPSRYAAWVELLVIQMFVPGTSFLGHLCGILAGLIYVNTPGVVS 223
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Match: A0A7S2TY11_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY11_9EUKA) HSP 1 Score: 153 bits (387), Expect = 2.550e-38 Identity = 96/244 (39.34%), Postives = 131/244 (53.69%), Query Frame = 2
Query: 506 GRHR---NPWFIVLGLQLVQKIVDLPRKPPLTLALMAGMTALHLAPEVVNNFLGTGPAVGGLGGFLAESYRRWVSNGYSNHIQELCLLPASMLEAYQRTGALGFRRFFLSAFLHGSERHLYYNMWSFLLKGVSLELDMGTRAYFGLLAFCLVTSQALFLVASWIMLVVFEQPSAMYACTVGFSGVIFALKYVLNRRSPAYTRVMGFKIHTRYAAWLELVLIQFMVPNASFLGHLCGIFAGILYV 1228
GR R +P ++L +QL ++I +L KPP TLALMA +A++L + +R + ++C+ PA +L ++R LSAF H + HLYYNM S L KGV LE GT + G+ L S + ++ A+WIM + S+M C VGFS V+FA K VLN SP T V G + +YA WLELV+I + PNASFLGHLCGI AG++YV
Sbjct: 7 GRRRGQIDPRMMMLLMQLGRQIANLEYKPPATLALMALNSAVYLYE-------------------FSLPFR----------VPDVCMHPAKILFGGD------WKRLVLSAFYHADDYHLYYNMSSLLWKGVQLEQQFGTEEFIGMTLVLLGLSHSFYVAAAWIMYTLGISSSSMQTCAVGFSAVLFAYKVVLNFNSPRMTNVYGISVPLKYACWLELVMISIITPNASFLGHLCGILAGLVYV 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig879.16319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig879.16319.1 >prot_H-elongata_contig879.16319.1 ID=prot_H-elongata_contig879.16319.1|Name=mRNA_H-elongata_contig879.16319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp MFPHFGPRMAPGLRGGMQNFGSGRGRHRNPWFIVLGLQLVQKIVDLPRKPback to top mRNA from alignment at H-elongata_contig879:10383..14311+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig879.16319.1 ID=mRNA_H-elongata_contig879.16319.1|Name=mRNA_H-elongata_contig879.16319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3929bp|location=Sequence derived from alignment at H-elongata_contig879:10383..14311+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig879:10383..14311+ >mRNA_H-elongata_contig879.16319.1 ID=mRNA_H-elongata_contig879.16319.1|Name=mRNA_H-elongata_contig879.16319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig879:10383..14311+ (Himanthalia elongata Himel1 dioecious)back to top |