mRNA_H-elongata_contig87853.16316.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87853.16316.1
Unique NamemRNA_H-elongata_contig87853.16316.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A6H5K8J3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J3_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 5.460e-45
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTITLSHKRMGID 299
            D FFLRTASYDIPAEDKSAFALEMDDVRVMLRDSS RSLALVDELGKGT   DGA+LAGA+LEEMDRVSITGIFATHLHELF+LPL+T +L+HKRMGID
Sbjct:  593 DCFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSGRSLALVDELGKGT---DGASLAGAILEEMDRVSITGIFATHLHELFELPLETESLTHKRMGID 688
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A0G4EAV3_VITBC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EAV3_VITBC)

HSP 1 Score: 147 bits (372), Expect = 3.540e-39
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTITLSHKRMGID 299
            D FF+RTA++D+PAE KSAFALEMDD+RVMLRD S RSL +VDELGKGTSARDGAALAGALLE +D V + GIFATHLHEL  LPL+T TLS+ +MG++
Sbjct:  824 DAFFVRTAAFDVPAEGKSAFALEMDDIRVMLRDCSPRSLVMVDELGKGTSARDGAALAGALLEALDSVPVRGIFATHLHELLHLPLETQTLSYHKMGVE 922
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: K8Z7P1_NANGC (Dna mismatch repair protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7P1_NANGC)

HSP 1 Score: 140 bits (352), Expect = 5.600e-39
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTIT-LSHKRMGID 299
            D  FLRTASYD+P+E KSAFALEMDDVRV+LRDS+ RSL  +DELGKGTSAR+GAAL+GAL+E +D V +TGIFATHLHE+FDLPL+T   +  KRMG +
Sbjct:  110 DHLFLRTASYDVPSEGKSAFALEMDDVRVLLRDSTSRSLVFLDELGKGTSAREGAALSGALIEALDAVPVTGIFATHLHEIFDLPLQTSDRVRWKRMGFE 209
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: W7TDK9_9STRA (Dna mismatch repair protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDK9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.700e-36
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTIT-LSHKRMGID 299
            D  FLRTASYD+P+E KSAFALEMDDVRV+LRDS+ RSL  +DELGKGTSAR+GAAL+GAL+E +D V +TGIFATHLHE+FDLPL+T   +  KRMG +
Sbjct:  507 DHLFLRTASYDVPSEGKSAFALEMDDVRVLLRDSTSRSLVFLDELGKGTSAREGAALSGALIEALDAVPVTGIFATHLHEIFDLPLQTSDRVRWKRMGFE 606
[Close]
BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A4D9CWC2_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWC2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.760e-36
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTIT-LSHKRMGID 299
            D  FLRTASYD+P+E KSAFALEMDDVRV+LRDS+ RSL  +DELGKGTSAR+GAAL+GAL+E +D V +TGIFATHLHE+FDLPL+T   +  KRMG +
Sbjct:  975 DHLFLRTASYDVPSEGKSAFALEMDDVRVLLRDSTSRSLVFLDELGKGTSAREGAALSGALIEALDAVPVTGIFATHLHEIFDLPLQTSDRVRWKRMGFE 1074
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A7S2V2K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2K5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.970e-34
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPL 260
            DGFFLR  S+D P+E KSAFALE +D+ V+LRDSS R+LA+VDE GKGTS+RDGA++AGALLE + R  + G+FATHLHELFDLPL
Sbjct:   13 DGFFLRCQSWDAPSEGKSAFALEAEDMAVLLRDSSHRTLAMVDEFGKGTSSRDGASVAGALLEALARRRVRGVFATHLHELFDLPL 98
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A7S2W1Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1Y7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.890e-34
Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLK-TITLSHKRMGID 299
            DG+FLRTA +DIPAE KSA+ALE D++R +LRD+S  SL +VDELG+GTS+RDGAA+AGALLE +D+    G+F+THLHEL DLPL+ +  +  +RMG +
Sbjct:   12 DGYFLRTAGHDIPAEGKSAWALEADEMRALLRDASSSSLVMVDELGRGTSSRDGAAVAGALLEVLDQKGCVGVFSTHLHELLDLPLELSPRVVRRRMGFE 111
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BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A812URG2_SYMMI (MSH1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URG2_SYMMI)

HSP 1 Score: 126 bits (317), Expect = 1.370e-32
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTITLSHKRMGI 296
            D FFLRTAS+D P E KSAFA+EMDD+RVM+RDS+++SL ++DE+GKGTS+RDGAA AGALLE M    + GIFATHLHEL  + L    +  KRMG+
Sbjct:  182 DSFFLRTASHDTPLEGKSAFAVEMDDIRVMMRDSTQKSLVMIDEIGKGTSSRDGAAFAGALLEWMSSTGMHGIFATHLHELLHMKLNLDNVKMKRMGV 279
[Close]
BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A0K6S924_9ALVE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S924_9ALVE)

HSP 1 Score: 118 bits (295), Expect = 8.700e-29
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLK 263
            D FFL+ A +D+P+E +SAFA E+DDVRVMLRD S RSL ++DELG+GTSARDGA++AGA+LE +  V + GIFATHLHEL  LPL+
Sbjct:  991 DAFFLKAAGFDVPSEGRSAFAQEIDDVRVMLRDCSTRSLVMMDELGRGTSARDGASIAGAVLETLAGVPVKGIFATHLHELLQLPLR 1077
[Close]
BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Match: A0A7S0DLR2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLR2_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 8.810e-27
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:    3 DGFFLRTASYDIPAEDKSAFALEMDDVRVMLRDSSKRSLALVDELGKGTSARDGAALAGALLEEMDRVSITGIFATHLHELFDLPLKTITLSHKRMGI 296
            D +FLR  S+D+PAE KSAFA+EMDD+RVMLRD + RSL   DE+GKGTS+RDGA L   LLE +   + T IFATHLHE+  LP++   L  ++M +
Sbjct:  321 DSYFLRATSHDVPAEGKSAFAVEMDDLRVMLRDCTPRSLMAADEIGKGTSSRDGATLCAGLLEYLSANNATCIFATHLHEILKLPIQATRLKARQMAV 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87853.16316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8J3_9PHAE5.460e-4587.88DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A0G4EAV3_VITBC3.540e-3973.74DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
K8Z7P1_NANGC5.600e-3971.00Dna mismatch repair protein (Fragment) n=1 Tax=Nan... [more]
W7TDK9_9STRA1.700e-3671.00Dna mismatch repair protein n=1 Tax=Nannochloropsi... [more]
A0A4D9CWC2_9STRA1.760e-3671.00DNA mismatch repair protein n=2 Tax=Monodopsidacea... [more]
A0A7S2V2K5_9STRA5.970e-3469.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2W1Y7_9STRA7.890e-3461.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A812URG2_SYMMI1.370e-3263.27MSH1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A0K6S924_9ALVE8.700e-2965.52DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S0DLR2_9EUKA8.810e-2756.12Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87853contigH-elongata_contig87853:772..1879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87853.16316.1prot_H-elongata_contig87853.16316.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87853 810..1879 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931279.9091375-UTR-H-elongata_contig87853:771..8091622931279.9091375-UTR-H-elongata_contig87853:771..809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87853 772..809 -
1691679771.3243814-UTR-H-elongata_contig87853:771..8091691679771.3243814-UTR-H-elongata_contig87853:771..809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87853 772..809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931279.9339242-CDS-H-elongata_contig87853:809..9131622931279.9339242-CDS-H-elongata_contig87853:809..913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87853 810..913 -
1691679771.3339713-CDS-H-elongata_contig87853:809..9131691679771.3339713-CDS-H-elongata_contig87853:809..913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87853 810..913 -
1622931280.0246005-CDS-H-elongata_contig87853:1722..18791622931280.0246005-CDS-H-elongata_contig87853:1722..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87853 1723..1879 -
1691679771.3451624-CDS-H-elongata_contig87853:1722..18791691679771.3451624-CDS-H-elongata_contig87853:1722..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87853 1723..1879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87853.16316.1

>prot_H-elongata_contig87853.16316.1 ID=prot_H-elongata_contig87853.16316.1|Name=mRNA_H-elongata_contig87853.16316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
STDFSSERRATISRRRTRAHSPSRWTTSGSCLGTRRSARWHWWMSLAKER
RRGMERRWPGLFWRRWIGSPSPEFLPRISTSCLTCR*
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mRNA from alignment at H-elongata_contig87853:772..1879-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87853.16316.1 ID=mRNA_H-elongata_contig87853.16316.1|Name=mRNA_H-elongata_contig87853.16316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig87853:772..1879- (Himanthalia elongata Himel1 dioecious)
TCGACGGATTTTTCCTCCGAACGGCGAGCTACGATATCCCGGCGGAGGAC
AAGAGCGCATTCGCCCTCGAGATGGACGACGTCAGGGTCATGCTTAGGGA
CTCGTCGAAGCGCTCGCTGGCATTGGTGGATGAGCTTGGCAAAGGAACGT
CGGCGAGGTGGGTTTTACAAAGACGTGGAGAAAAAGAGATAATACTAAAA
GTATTTTCTTCAGGTACGCGGCAGGACTTGCTTCTAAGTTTGCTCCATAT
ACTTCAGTAGATGCTGTGTTTTTCTATTCTTGCTTTACATGTATCACATT
CACTCGCACGTCGTTTCTTGGATACATTTACTCACGGTGCAGGGGAAGGG
GGAAAGTTTGAGCTGAGTTTATTGTGATGCAAATATGTTAGTCGCTTTGT
TGCAGAGGATCGAGGCGCGTACTCGGCGAAATCGCCAGTCGCGTCCGGCA
ATGCGATCGTCGATGAGTGAATATGTTGCATTACACTATACTATACTATA
ATATACTATACTACACTACATATGAAAAAATGTCGTTGGAGCTCCCACCC
CCCCCCCCCCCCCCCACCACCCCCCCAACCATCACCTATTTTTTTTATAT
CCTTTCATAAAACACAAAAANNNNNNNNNNTTTTACACTAAATATGAAAA
AATGTTGTTGGAGGCCCCCCCCCCCCCCCCTCTCCCAGCCCATCCAGTTC
ATCTGTTTTTTTATTGATACACATCTTGCAACTGAAGAACAATTTCGACA
TAATTGAGTCAGCGATATGTCTAATAATATGCAAATCCCACAGGCTAGTG
AATCCAAAGAGCTGCGAAGATCAACGGGTCACATTTTGTTGACGTCACCC
GGCAACGCGCACCGTAATGTATCAAGTGTAAATATAAAAATGTGTCCGTA
CGCATTCAAGAAGCGTGCTATTTTTTTCACTTGAAAATAAAGTTATCTGA
CGACACGAGTTGGCAGGGATGGAGCGGCGCTGGCCGGGGCTCTTCTGGAG
GAGATGGATCGGGTCTCCATCACCGGAATTTTTGCCACGCATCTCCACGA
GCTGTTTGACCTGCCGTTGAAGACCATCACGCTGTCCCACAAGCGGATGG
GCATCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig87853:772..1879-

>mRNA_H-elongata_contig87853.16316.1 ID=mRNA_H-elongata_contig87853.16316.1|Name=mRNA_H-elongata_contig87853.16316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig87853:772..1879- (Himanthalia elongata Himel1 dioecious)
TCGACGGATTTTTCCTCCGAACGGCGAGCTACGATATCCCGGCGGAGGAC
AAGAGCGCATTCGCCCTCGAGATGGACGACGTCAGGGTCATGCTTAGGGA
CTCGTCGAAGCGCTCGCTGGCATTGGTGGATGAGCTTGGCAAAGGAACGT
CGGCGAGTCGACGGATTTTTCCTCCGAACGGCGAGCTACGATATCCCGGC
GGAGGACAAGAGCGCATTCGCCCTCGAGATGGACGACGTCAGGGTCATGC
TTAGGGACTCGTCGAAGCGCTCGCTGGCATTGGTGGATGAGCTTGGCAAA
GGAACGTCGGCGAGGGATGGAGCGGCGCTGGCCGGGGCTCTTCTGGAGGA
GATGGATCGGGTCTCCATCACCGGAATTTTTGCCACGCATCTCCACGAGC
TGTTTGACCTGCCGTTGAGGATGGAGCGGCGCTGGCCGGGGCTCTTCTGG
AGGAGATGGATCGGGTCTCCATCACCGGAATTTTTGCCACGCATCTCCAC
GAGCTGTTTGACCTGCCGTTGA
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