mRNA_H-elongata_contig87811.16312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87811.16312.1
Unique NamemRNA_H-elongata_contig87811.16312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 9.540e-58
Identity = 92/107 (85.98%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFGRQGKVARRGNHHALK 321
            VCTDIA+RGLDMPDVDHV+MFDFPLNPIDYLHRSGRTARMGAKGRVTSLL KRDL+LAAAIEQAVQ+G+PLDELSSRRTDYA G +LGPLFGR+GKV+ +G+HH+LK
Sbjct:  334 VCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKGKVSVKGSHHSLK 440
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.160e-56
Identity = 92/107 (85.98%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFGRQGKVARRGNHHALK 321
            VCTDIA+RGLDMPDVDHV+MFDFPLNPIDYLHRSGRTARMGAKGRVTSLL KRDL+LAAAIEQAVQ+G+PLDELSSRRTDYA G +LGPLFGR+GKV+ +G+HH+LK
Sbjct:  451 VCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKGKVSVKGSHHSLK 557
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A7S3XYE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE8_HETAK)

HSP 1 Score: 149 bits (377), Expect = 1.530e-41
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFGRQGKVARRGNHHALK 321
            V TDIAARGLD+PDV+HV+MFDFPLNP+DYLHRSGRTARMGA G VTS+L KRD +LA AIE AV+ G+PLD L++ + DY +G +L  + GR+GK + +GN+H+ K
Sbjct:  240 VATDIAARGLDVPDVEHVVMFDFPLNPVDYLHRSGRTARMGASGMVTSVLAKRDRVLAGAIEAAVRKGLPLDTLTASKRDYQEGKKLAEVVGRRGKASGQGNNHSFK 346
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.860e-38
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFGRQG 285
            V TD+AARGLD+P+V HVIMFDFPLNP+DYLHRSGRTARMGA+GRVTSLL KRD +LAAAIE AV AG PLD L++RRTDY  G +L    G +G
Sbjct:  338 VATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.330e-37
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLF-GRQG-KVARRGNHHA 315
            VCTDIA+RGLDMP V+HV+MFDFPLNPI+YLHRSGRTARMGAKG+VTSLL KRD +LA+A++ AV  G+PLD LS+R+ DY  G +L  L  G+ G   + +GN HA
Sbjct:  440 VCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHA 546
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A6U1QKZ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QKZ5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.900e-36
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPL--FGRQGKVAR-----RGNHHA 315
            VCTD+A+RGLDMP VDHV+MFDFPLNPID+LHRSGRTARMG  G VTS+L K D +LA AIE+A+   MPLD+LSSR+ DY D  +L  +   GR+ K A+     RGN+H+
Sbjct:   93 VCTDLASRGLDMPTVDHVVMFDFPLNPIDFLHRSGRTARMGRHGLVTSILTKGDRVLATAIERAILTNMPLDQLSSRKQDYGDRGKLHHMTKVGRR-KAAKAPKNKRGNNHS 203
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A7S1UVX5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVX5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.340e-35
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTAR-----MGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFG 276
            V TD+AARGLD+P VDHV+MFDFPLNP+DYLHRSGRTAR         GRVT+L+ KRD +LA  IE+AVQ G PLD LSSR++DY  GARL  L G
Sbjct:   37 VATDLAARGLDVPQVDHVVMFDFPLNPLDYLHRSGRTARGVGGGRTGNGRVTALVCKRDKVLATGIERAVQRGEPLDGLSSRKSDYLPGARLNKLVG 133
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A7S0CEE8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEE8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.960e-34
Identity = 65/104 (62.50%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTAR----------------MGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLG 264
            VCTDIAARGLD+P+VDHV+MFDFPLNPIDYLHR+GRTAR                    GRVT+L+ KRD +LA AIE AVQ G  LD LSSR+TDY  GA+LG
Sbjct:   27 VCTDIAARGLDVPEVDHVVMFDFPLNPIDYLHRAGRTARGVNQVQSESGQNGGVNRSGSGRVTALVAKRDRVLALAIEGAVQRGEALDGLSSRKTDYLPGAKLG 130
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A7S2Y7S8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7S8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.100e-32
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARL 261
            VCTD+AARGLD+P VDHVIMFDFPLN +DYLHRSGRTAR    GRVT+L+ KRD +LA AIE+AVQ G PLD L+SR++DY  G R+
Sbjct:  259 VCTDLAARGLDVPQVDHVIMFDFPLNAMDYLHRSGRTARGTLSGRVTALVSKRDKVLAHAIERAVQKGEPLDGLTSRKSDYLPGGRV 345
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BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Match: A0A1Z5K3P6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3P6_FISSO)

HSP 1 Score: 126 bits (317), Expect = 6.620e-32
Identity = 57/82 (69.51%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLVKRDLILAAAIEQAVQAGMPLDELSSRRTDYA 246
            VCTD+AARGLD+P VDHV++FDFPLN +DYLHR+GRTAR G KG+VT+L+ KRD +LA AIE+AV +G P+D LSSR++DYA
Sbjct:  435 VCTDLAARGLDIPTVDHVVLFDFPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYA 516
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87811.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ1_ECTSI9.540e-5885.98DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY63_9PHAE1.160e-5685.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XYE8_HETAK1.530e-4164.49Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836CEI1_9STRA7.860e-3872.63DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D2M2_9STRA6.330e-3765.42Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6U1QKZ5_9STRA1.900e-3661.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1UVX5_9STRA6.340e-3565.98Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0CEE8_9STRA6.960e-3462.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2Y7S8_9STRA3.100e-3270.11Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5K3P6_FISSO6.620e-3269.51Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87811contigH-elongata_contig87811:142..2416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue8.6e-48
Seed eggNOG ortholog2880.D7FZQ1
KEGG koko:K20096
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-08_001040.1
Exons3
Model size321
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87811.16312.1prot_H-elongata_contig87811.16312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87811 142..2416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931279.2982206-CDS-H-elongata_contig87811:141..2441622931279.2982206-CDS-H-elongata_contig87811:141..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 142..244 +
1691679771.1253426-CDS-H-elongata_contig87811:141..2441691679771.1253426-CDS-H-elongata_contig87811:141..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 142..244 +
1622931279.3220627-CDS-H-elongata_contig87811:1109..11951622931279.3220627-CDS-H-elongata_contig87811:1109..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 1110..1195 +
1691679771.1365893-CDS-H-elongata_contig87811:1109..11951691679771.1365893-CDS-H-elongata_contig87811:1109..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 1110..1195 +
1622931279.3432488-CDS-H-elongata_contig87811:2284..24161622931279.3432488-CDS-H-elongata_contig87811:2284..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 2285..2416 +
1691679771.1468635-CDS-H-elongata_contig87811:2284..24161691679771.1468635-CDS-H-elongata_contig87811:2284..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87811 2285..2416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87811.16312.1

>prot_H-elongata_contig87811.16312.1 ID=prot_H-elongata_contig87811.16312.1|Name=mRNA_H-elongata_contig87811.16312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
VCTDIAARGLDMPDVDHVIMFDFPLNPIDYLHRSGRTARMGAKGRVTSLL
VKRDLILAAAIEQAVQAGMPLDELSSRRTDYADGARLGPLFGRQGKVARR
GNHHALK
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mRNA from alignment at H-elongata_contig87811:142..2416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87811.16312.1 ID=mRNA_H-elongata_contig87811.16312.1|Name=mRNA_H-elongata_contig87811.16312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-elongata_contig87811:142..2416+ (Himanthalia elongata Himel1 dioecious)
GTCTGCACGGACATCGCCGCGAGGGGGCTTGACATGCCGGACGTGGACCA
CGTGATCATGTTTGACTTTCCGCTCAACCCCATCGACTACCTGCATCGAT
CAGGTAAAGTTTGTGTCTTTGTGTATTGCTTGATGCCGACTTTGGTGGGT
AGGAGTTTTGTTATTGTACCGCTGTTCGTGGTACGCACTATATATGCATT
TTGTATATGTTATGTACTATGTCGTTGTCTGTTGCGAAAGGCGCGTTTCC
CCTTCTCTGTCGTGGGCGGTATGGAGAGACTATGACAGAGATATATATAT
TATGGCACAGAGAGAGAGACACACACACACAAATAGCGGATGGGGCACAG
CACATGTATGTGCGTGCGTTATGATGTCGAAGACTGTAGCGCTGTTCTGC
GTGCTCATAGCGTGTCTTTTAGATAGGGAGAAGCCATTCAATTGAAGATA
GTCGATTTTTGCGAGGAATAGACAGCGAAGGCCTGAGAGATAGCTATATA
GCGTTAACCTACGAGACCCTCTGAGAACCCCCCCCCACCCCCTCTCACTC
CTCTCCGAGAACATCCCCTGCCTTTTTATTTCGCCTCAACTGTGTAAATA
AAAGGATGGTCTTTATGTAGCACTCGCTGCGTTGCATAGATCTCACCTAG
GATTATTTAACGGCTAATGTTGTTTTCCGAGCCTGTATTGCTTGTATTGT
ATAGGAAATAATGATTGAGCCTGTTCAAGGGGCGGGAGGTGGGGAGTTCC
TAGGAGATGTTCTCCGGAAGGCTTTCCAGTACTCGTCGAAGGAAGAAAGA
ACACTTAACATGATCGCAATTCGACGGGTAGGAAGGAGTTCAACCGGCGG
TTGTCTGTAAATAACTTTTTGTTCGTGCAGAGGGAACACCATTCGACGAA
AATAACCGTAAAATAATATTAAAAAACAAAACTCGTGAACGCCTCTCGAC
CGGCTGCGGTGTGTTCAGGACGAACCGCGCGTATGGGAGCCAAGGGACGA
GTGACGTCCCTCCTGGTGAAGCGTGACCTCATCCTCGCGGCGGCGATTGA
GCAGGTACAGCAGCAGCAGCAATAGCGATAGCGGTAGCAGCGATTGTAGA
GCAGCGTCGGTGTAGGAATAAAAAAAGAAGGGGTCGTTCGACAGGAGGGC
GGAGGGTGTGTGTTTATCGAAAAGGGCACCCCCAATCGTGTTGGATCGCG
GATTATCCTCCGGCGAACTAGCGCTATGTAGTGCGGAACCGCGCTTGCCT
GAGAAATCGGTGTGAAGCATGTCGAGATTTATTTCGTAACGCATTTTGTC
AGGCAGCGCACAGCTCCTCCTTGGTGAGGGTGAGGGTGAGGAGCATCTCC
CCTGTCCCCCGTACGTCCGTTTGGCGATCGCGTCTCACACGCTTAACCAT
AACCATAGCCCCCCGTTGCCTTCGCCGTCTTTAGCCTCGTTCGTCGTGTA
AACGGTTACCTATTTTTTTTTGTTTTATTGTTATTTAGTGCCGATGGGGT
ATATAATACCAGTCAACGACCTCGGTTTACTAGTCTCACCTACATAACCG
GCAACGCTGTCCATCCCATCCCATCCCATCCCCGGTTCACCTCTACGACT
TTTTTTAGCGAGTCAAGCCCAGCGCTTGTACACCTTGTCAGTATTCGGTA
TTAACATTCGGTATCACGATTCGGTAAAGCCAATGGTTGAAATTTGACGA
TTTCTGCCATCATAGAAGAAGAAAAAGTAACCAAACAATTATCAGGGTGG
AAAAATGGAAATGAACTCTCATGATTTCGAGCACTATTAAATACAGCTTG
TTTCTTCAAATTATATATCGAGGTCTGTGGGTGTGTATTTATTAAATTGC
ATATATCCGCGCAATCCGGCACTGTCATGCTAAATATTAGCATTGGTTCT
CCCAATGGAGGAGGATATCATATTTGCTGTGAAAACCTCTGAGCAGACGC
GACAAACGGGACATACTCTCTCTTTTACAGTTTTTATGTGTAAGCCCTCT
CTGTTTCCTTCCCTTATCGCTATATAACCTCGGTCGGCACCTACTGGACC
AAGGCTCTTTCTTGTAGGCTATGTGAGCATACGCATACGTAATCGTTTGG
CCTGGTAAACCGACTGCGCCGGACGCGAATACGTGAAACGCAGGCGGTGC
AGGCGGGAATGCCCTTGGACGAGCTGTCCTCAAGAAGAACGGACTACGCC
GACGGCGCGCGCCTGGGGCCGCTTTTCGGTCGCCAGGGGAAGGTCGCTAG
GCGCGGGAACCACCATGCTCTAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig87811:142..2416+

>mRNA_H-elongata_contig87811.16312.1 ID=mRNA_H-elongata_contig87811.16312.1|Name=mRNA_H-elongata_contig87811.16312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig87811:142..2416+ (Himanthalia elongata Himel1 dioecious)
GTCTGCACGGACATCGCCGCGAGGGGGCTTGACATGCCGGACGTGGACCA
CGTGATCATGTTTGACTTTCCGCTCAACCCCATCGACTACCTGCATCGAT
CAGGTCTGCACGGACATCGCCGCGAGGGGGCTTGACATGCCGGACGTGGA
CCACGTGATCATGTTTGACTTTCCGCTCAACCCCATCGACTACCTGCATC
GATCAGGACGAACCGCGCGTATGGGAGCCAAGGGACGAGTGACGTCCCTC
CTGGTGAAGCGTGACCTCATCCTCGCGGCGGCGATTGAGCAGGACGAACC
GCGCGTATGGGAGCCAAGGGACGAGTGACGTCCCTCCTGGTGAAGCGTGA
CCTCATCCTCGCGGCGGCGATTGAGCAGGCGGTGCAGGCGGGAATGCCCT
TGGACGAGCTGTCCTCAAGAAGAACGGACTACGCCGACGGCGCGCGCCTG
GGGCCGCTTTTCGGTCGCCAGGGGAAGGTCGCTAGGCGCGGGAACCACCA
TGCTCTAAAGGCGGTGCAGGCGGGAATGCCCTTGGACGAGCTGTCCTCAA
GAAGAACGGACTACGCCGACGGCGCGCGCCTGGGGCCGCTTTTCGGTCGC
CAGGGGAAGGTCGCTAGGCGCGGGAACCACCATGCTCTAAAG
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