mRNA_H-elongata_contig87762.16308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87762.16308.1
Unique NamemRNA_H-elongata_contig87762.16308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 5.570e-67
Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
            L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V  +    P+ P YVV+K +GY+G +W  ++RY  CVPI+PV+T+W       +GG   RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM  +R+  LGN P +KA LQEE RL  LA +
Sbjct:  101 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 272          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.320e-65
Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
            L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V  +    P+ P YVV+K +GY+G +W  ++RY  CVPI+PV+T+W       +GG   RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM  +R+  LGN P +KA LQEE RL  LA +
Sbjct:  275 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 446          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 5.470e-60
Identity = 100/169 (59.17%), Postives = 129/169 (76.33%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEE 534
            L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V  +    P+ P YVV+K +GY+G +W  ++RY  CVPI+PV+T+W       +GG   RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM  +R+  LGN P +KA LQEE
Sbjct: 1406 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.220e-59
Identity = 96/169 (56.80%), Postives = 125/169 (73.96%), Query Frame = 1
Query:   55 IVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
            ++++NL+Q+ G VNGI+ EV ++V  +    P+ P YVV+K +GY+G +W  ++RY  CVPI+PV+T+W       +GG   RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM  +R+  LGN P +KA LQEE RL  LA +
Sbjct:    1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 163          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT)

HSP 1 Score: 145 bits (367), Expect = 7.370e-41
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
            +FL KGA+V++T NLW   G  NG    + DIV+   +  P+ P  V++  + Y GP + +E     CVPI P+  S        EGG   R  LPL+L WA+T+HKSQG TLSKA ID+G+ E  AG+++V +SR K L   ++EPM   RL+ L +   L+  LQEEDRL  LA
Sbjct:   13 VFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLA 181          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: UPI00106B9E63 (uncharacterized protein LOC114530406 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B9E63)

HSP 1 Score: 144 bits (363), Expect = 3.540e-39
Identity = 75/180 (41.67%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   25 TLFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADTI 564
            TL +AK A+V++T NLW  AG  NG+   ++DI+Y + +  P  P  VV+K D Y GP +        CVPI+P+  S +     HE     R  LPL L WA+T+HKSQG T+ K  +D+G+KE   G+++V LSR +KL+ +++EPMP +RLS +     L   L EE RL+ LA  +
Sbjct:  112 TLLIAKKARVMLTMNLWPSAGLCNGVTGYIEDIIYAQSQEPPLLPTAVVVKFDNYIGPSFSTTPC---CVPISPITVSVNLNNVIHE-----RQQLPLTLAWALTIHKSQGMTIDKLWVDIGKKEHSLGMSYVALSRVRKLSSMVIEPMPFDRLSSIKKSDTLHYRLIEEKRLENLAKNL 283          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7LPR6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LPR6_PARCT)

HSP 1 Score: 145 bits (365), Expect = 5.390e-39
Identity = 77/176 (43.75%), Postives = 107/176 (60.80%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
            +FLAKGAKV++T NLW   G  NG    V D +++     P+ P  VV++ D Y GP +  +D    CVPI P+  S  +    HE     R  LPL+L WA+T+HKSQG TLSKA ID+G+ E  AG+++V +SR K L+  ++EPM   RL+ L +   L+  L+EE+RL  LA
Sbjct:  150 VFLAKGAKVMLTMNLWSNVGLCNGATGTVIDFIFESNHRPPDLPVGVVVQFDNYRGPSF--DDTQPSCVPICPITVSSQSGNGFHE-----RQQLPLRLAWALTIHKSQGLTLSKAWIDIGKSERTAGVSYVAISRVKTLSSCVIEPMTYERLTSLKSSANLQFRLEEENRLDRLA 318          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7GPP1_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPP1_PARCT)

HSP 1 Score: 147 bits (372), Expect = 1.130e-37
Identity = 78/176 (44.32%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
            +FLAKGA+V++T NLW   G  NG    + DIV+   +  P+ P  V++  + Y GP + +E     CVPI P+  S        EGG   R  LPL+L WA+T+HKSQG TLSKA ID+G+ E  AG+++V +SR K L   ++EPM   RL+ L +   L+  LQEEDRL  LA
Sbjct: 1461 VFLAKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLA 1629          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A7D9EBM6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EBM6_PARCT)

HSP 1 Score: 140 bits (353), Expect = 1.150e-37
Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
            +FLAKGA+V++T NLW   G  NG    V DI+Y      P+ P  ++++ D Y GP +  +D    CVPI P+  S        E G   R  LPL+L WA+++HKSQG TL K  ID+G+ E  AG+++V +SRAK L   ++EPM   RL+ L +   L   L+EE+RL   A T
Sbjct:  109 VFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPVAIIVEFDNYRGPVF--DDNKPSCVPICPITVS-----SQTEIGFHERQQLPLRLAWALSIHKSQGLTLPKVWIDIGKSERTAGVSYVAISRAKTLASCVIEPMTYERLTSLKSSANLPYRLEEENRLDQFAQT 279          
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: UPI001F03AE50 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03AE50)

HSP 1 Score: 139 bits (349), Expect = 1.760e-37
Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 1
Query:   28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
            +FLAKGA+V++T NLW   G  NG   +V DI++ +    P+ P  V+++ + Y GP +  +  +  CVPI P+  S        E G   R  LPL+L WA+T+HKSQG TL KA ID+G+ E  AG+++V +SR K +   ++EPM   RL+ L +   L+  ++EE+RL  LA T
Sbjct:   75 VFLAKGARVMLTMNLWSTVGLCNGATGKVVDIIFHDNHQPPDLPIAVIIEFENYRGPAFNVDKPF--CVPICPITVS-----SQLETGYHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSILSCVIEPMTYERLTSLKSSANLQYRIEEENRLDSLAQT 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE5.570e-6758.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE6.320e-6558.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L976_9PHAE5.470e-6059.17ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5K4U7_9PHAE6.220e-5956.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7KC61_PARCT7.370e-4143.75ATP-dependent DNA helicase PIF1 n=1 Tax=Paramurice... [more]
UPI00106B9E633.540e-3941.67uncharacterized protein LOC114530406 n=1 Tax=Dendr... [more]
A0A6S7LPR6_PARCT5.390e-3943.75Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6S7GPP1_PARCT1.130e-3744.32ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9EBM6_PARCT1.150e-3741.57Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI001F03AE501.760e-3740.45ATP-dependent DNA helicase PIF1-like n=2 Tax=Xenia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87762contigH-elongata_contig87762:1796..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue9.5e-09
Seed eggNOG ortholog400682.PAC_15726636
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGs3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.7308412-UTR-H-elongata_contig87762:1795..21341622931278.7308412-UTR-H-elongata_contig87762:1795..2134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87762 1796..2134 +
1691679770.936365-UTR-H-elongata_contig87762:1795..21341691679770.936365-UTR-H-elongata_contig87762:1795..2134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87762 1796..2134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.7532108-CDS-H-elongata_contig87762:2134..23591622931278.7532108-CDS-H-elongata_contig87762:2134..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87762 2135..2359 +
1691679770.9485493-CDS-H-elongata_contig87762:2134..23591691679770.9485493-CDS-H-elongata_contig87762:2134..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87762 2135..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87762.16308.1prot_H-elongata_contig87762.16308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87762 2135..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87762.16308.1

>prot_H-elongata_contig87762.16308.1 ID=prot_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLS
RLGNKPVLKAHLQEEDRLKGLADTI
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mRNA from alignment at H-elongata_contig87762:1796..2359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87762.16308.1 ID=mRNA_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at H-elongata_contig87762:1796..2359+ (Himanthalia elongata Himel1 dioecious)
CACACCGCAACACGATCCGACACAACACTGTTCCTGGCAAAGGGGGCTAA GGTTATAGTTACACGTAACTTGTGGCAGGAAGCAGGGTACGTCAACGGAA TACAGAGAGAGGTTCAAGATATAGTATACGACGAGGGCAAGGCATCACCT GAGCAGCCGGGTTACGTGGTCATGAAACTGGACGGCTATACAGGACCACA GTGGCCGGACGAGGATCGGTATGGAGATTGTGTTCCAATCGCTCCCGTTG AGACCTCCTGGTCTGCACCAGGTCAAGACCATGAAGGTGGTATCACAACC AGAACGTAGCTCCCACTCAAGTTATGCTGGGCTATTACCATGCACAAAAG TCAAGGCCAGACGTTGTCAAAAGCCGTGATCGATTTGGGGGAAAAGGAAG CGTGCGCTGGATTAGCTTTTGTCTGTTTGAGTCGTGCTAAGAAGTTGACT GATTTGCTGGTAGAACCAATGCCTTCCAATCGTCTCTCAAGGTTAGGCAA CAAGCCTGTTCTCAAGGCACATCTGCAAGAAGAAGACCGTCTGAAGGGGC TAGCTGACACAATC
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Coding sequence (CDS) from alignment at H-elongata_contig87762:1796..2359+

>mRNA_H-elongata_contig87762.16308.1 ID=mRNA_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig87762:1796..2359+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAAAGTCAAGGCCAGACGTTGTCAAAAGCCGTGATCGATTTGGG
GGAAAAGGAAGCGTGCGCTGGATTAGCTTTTGTCTGTTTGAGTCGTGCTA
AGAAGTTGACTGATTTGCTGGTAGAACCAATGCCTTCCAATCGTCTCTCA
AGGTTAGGCAACAAGCCTGTTCTCAAGGCACATCTGCAAGAAGAAGACCG
TCTGAAGGGGCTAGCTGACACAATCATGCACAAAAGTCAAGGCCAGACGT
TGTCAAAAGCCGTGATCGATTTGGGGGAAAAGGAAGCGTGCGCTGGATTA
GCTTTTGTCTGTTTGAGTCGTGCTAAGAAGTTGACTGATTTGCTGGTAGA
ACCAATGCCTTCCAATCGTCTCTCAAGGTTAGGCAACAAGCCTGTTCTCA
AGGCACATCTGCAAGAAGAAGACCGTCTGAAGGGGCTAGCTGACACAATC
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