mRNA_H-elongata_contig87740.16305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87740.16305.1
Unique NamemRNA_H-elongata_contig87740.16305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87740.16305.1 vs. uniprot
Match: D7G8T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T8_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.270e-53
Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:   10 SLAHYKLYLVSKVAEKMRADSGLEPENFRGEGGPGKSKKKKKLILNFSENEFESLTELLEKADELNGVKWGSKVGVRGAGEKTFLQLGAASSILDWLSGEAQPGQYGELDTG 345
            SL HYKLYLVSKV+ K+R DSGLEPENFRGEGGP  SKKKKK  LNFSENEFESL+ LL KAD+LNGVKWG + GVRG   KTFL++GAASSILDWLSGEAQ GQYG+LD G
Sbjct:  105 SLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPHTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLG 216
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BLAST of mRNA_H-elongata_contig87740.16305.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.980e-48
Identity = 87/112 (77.68%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:   10 SLAHYKLYLVSKVAEKMRADSGLEPENFRGEGGPGKSKKKKKLILNFSENEFESLTELLEKADELNGVKWGSKVGVRGAGEKTFLQLGAASSILDWLSGEAQPGQYGELDTG 345
            SL HYKLYLVSKV+ K+R DSGLEPENFRGEGGP  SKK+KK  LNFSENEFESL+ LL KAD+LNGVKWG + GVRG   KTFL++GAASSILDWLSGEAQ GQYG LD G
Sbjct:  824 SLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKEKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGGLDLG 935
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87740.16305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8T8_ECTSI1.270e-5378.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKK5_9PHAE3.980e-4877.68DUF4211 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87740contigH-elongata_contig87740:445..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4211
Ec32 orthologEc-15_004200.1
Exons2
Model size461
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87740.16305.1prot_H-elongata_contig87740.16305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87740 502..1160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.4329677-UTR-H-elongata_contig87740:444..5011622931278.4329677-UTR-H-elongata_contig87740:444..501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87740 445..501 +
1691679770.8040466-UTR-H-elongata_contig87740:444..5011691679770.8040466-UTR-H-elongata_contig87740:444..501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87740 445..501 +
1622931278.488605-UTR-H-elongata_contig87740:1160..12071622931278.488605-UTR-H-elongata_contig87740:1160..1207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87740 1161..1207 +
1691679770.8335116-UTR-H-elongata_contig87740:1160..12071691679770.8335116-UTR-H-elongata_contig87740:1160..1207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87740 1161..1207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.4524703-CDS-H-elongata_contig87740:501..6121622931278.4524703-CDS-H-elongata_contig87740:501..612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87740 502..612 +
1691679770.8143427-CDS-H-elongata_contig87740:501..6121691679770.8143427-CDS-H-elongata_contig87740:501..612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87740 502..612 +
1622931278.4724462-CDS-H-elongata_contig87740:914..11601622931278.4724462-CDS-H-elongata_contig87740:914..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87740 915..1160 +
1691679770.823883-CDS-H-elongata_contig87740:914..11601691679770.823883-CDS-H-elongata_contig87740:914..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87740 915..1160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87740.16305.1

>prot_H-elongata_contig87740.16305.1 ID=prot_H-elongata_contig87740.16305.1|Name=mRNA_H-elongata_contig87740.16305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MRADSGLEPENFRGEGGPGKSKKKKKLILNFSENEFESLTELLEKADELN
GVKWGSKVGVRGAGEKTFLQLGAASSILDWLSGEAQPGQYGELDTGFGGA
RIEAEEDDDGEEKEEEFM*
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mRNA from alignment at H-elongata_contig87740:445..1207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87740.16305.1 ID=mRNA_H-elongata_contig87740.16305.1|Name=mRNA_H-elongata_contig87740.16305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig87740:445..1207+ (Himanthalia elongata Himel1 dioecious)
CTGTCGTTCAGCCTGGCGCACTACAAGCTGTACCTGGTAAGCAAGGTGGC
CGAGAAAATGAGGGCGGACAGCGGCTTGGAGCCAGAGAACTTCAGGGGGG
AGGGTGGGCCCGGGAAGAGCAAGAAGAAAAAGAAGCTCATCCTCAATTTC
TCCGAGAACGAGTTCGAGGTACGCACTATTCGTAGTGTACAGCCTTGTAC
AGCTAGCGTAACACTGCTGTTTGCCTTGTCTCGACTGGGCTGGGCGGCGT
CCACCACACCCCTATCTTATTAAATGAGTATTTACCGTAACGTACGAGTA
CATGCCACCCCGACGCCCTCCTTACACCCTCCCGCCTCCCCCCACCCCAA
CCAATTCCCTACTGTTTTTTTAAAAATGTTTTATGTTGGGTATATTACAT
AATGTTTTATTTATTTTTGCGTCTACCCCCCCCCTTTTCCCCCTTGCTCG
CGTGTTGCTTTGCCCTGAAGTCTCTCACGGAGCTCCTGGAGAAAGCAGAC
GAGCTGAACGGGGTCAAGTGGGGCTCGAAGGTTGGCGTGCGAGGCGCAGG
CGAGAAGACCTTCCTTCAGCTAGGGGCGGCGTCCTCCATCCTTGACTGGC
TCTCTGGCGAGGCGCAACCGGGGCAATATGGCGAGCTAGACACGGGGTTT
GGTGGAGCACGTATCGAGGCGGAGGAGGATGATGACGGGGAAGAAAAGGA
GGAGGAGTTTATGTAGGGAGGGGAAGGCGGCGGCGTACGGTTGGGAGTCG
TGGAGGGCGATAC
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Coding sequence (CDS) from alignment at H-elongata_contig87740:445..1207+

>mRNA_H-elongata_contig87740.16305.1 ID=mRNA_H-elongata_contig87740.16305.1|Name=mRNA_H-elongata_contig87740.16305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig87740:445..1207+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGCGGACAGCGGCTTGGAGCCAGAGAACTTCAGGGGGGAGGGTGG
GCCCGGGAAGAGCAAGAAGAAAAAGAAGCTCATCCTCAATTTCTCCGAGA
ACGAGTTCGAGATGAGGGCGGACAGCGGCTTGGAGCCAGAGAACTTCAGG
GGGGAGGGTGGGCCCGGGAAGAGCAAGAAGAAAAAGAAGCTCATCCTCAA
TTTCTCCGAGAACGAGTTCGAGTCTCTCACGGAGCTCCTGGAGAAAGCAG
ACGAGCTGAACGGGGTCAAGTGGGGCTCGAAGGTTGGCGTGCGAGGCGCA
GGCGAGAAGACCTTCCTTCAGCTAGGGGCGGCGTCCTCCATCCTTGACTG
GCTCTCTGGCGAGGCGCAACCGGGGCAATATGGCGAGCTAGACACGGGGT
TTGGTGGAGCACGTATCGAGGCGGAGGAGGATGATGACGGGGAAGAAAAG
GAGGAGGAGTTTATGTAGTCTCTCACGGAGCTCCTGGAGAAAGCAGACGA
GCTGAACGGGGTCAAGTGGGGCTCGAAGGTTGGCGTGCGAGGCGCAGGCG
AGAAGACCTTCCTTCAGCTAGGGGCGGCGTCCTCCATCCTTGACTGGCTC
TCTGGCGAGGCGCAACCGGGGCAATATGGCGAGCTAGACACGGGGTTTGG
TGGAGCACGTATCGAGGCGGAGGAGGATGATGACGGGGAAGAAAAGGAGG
AGGAGTTTATGTAG
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