mRNA_H-elongata_contig87667.16300.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: D8LDA6_ECTSI (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA6_ECTSI) HSP 1 Score: 183 bits (464), Expect = 7.700e-54 Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGPPRQ 292
RVWGIQELF+SLFS GNG+PHLYHLL S G+YNPPGNYM FWLT+YPWVG+NTW+WS+VFHARD+ W+EAADYF AL+NIFFVVWVA VR AGPPR
Sbjct: 256 RVWGIQELFSSLFSAGNGLPHLYHLLLSPGQYNPPGNYMRFWLTVYPWVGMNTWLWSAVFHARDVPWTEAADYFFALMNIFFVVWVAFVRLAGPPRN 352
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A6H5L2L9_9PHAE (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L9_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.880e-29 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2
Query: 116 MCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGPPRQ 292
M FWLT+YPWVG+NTW+WS+VFHARD+ W+EAADYF ALLNIFFVVWVA VR AGPPR
Sbjct: 1 MRFWLTVYPWVGMNTWLWSAVFHARDVPWTEAADYFFALLNIFFVVWVAFVRLAGPPRN 59
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A835ZC47_9STRA (Post-GPI attachment to proteins factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC47_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 4.820e-21 Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPP---GNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAG 280
RVWG+QEL AS+F+ N PH+Y+L PP ++MC L Y +G+N W W+++FHARD +++E ADYF A+L I +++W+ ++R G
Sbjct: 88 RVWGVQELLASVFAAANLAPHVYYLC------KPPWPLSHFMCTTLQGYSLLGVNAWAWATIFHARDTRFTERADYFSAMLAITYLLWIVVMRLCG 177
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A8H7R3A8_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R3A8_9FUNG) HSP 1 Score: 85.5 bits (210), Expect = 7.420e-18 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
RV GIQE + LFS+GNG+ HLY+ R + P ++ L LYP VG+N W+WS++FH RD+ W+E DYF A + + ++ A++R
Sbjct: 89 RVLGIQEPASVLFSIGNGLVHLYYFFLLRKKI-PTNYHLKTSLLLYPCVGMNAWLWSTIFHGRDVHWTELMDYFSAFSLVLYSLFFALIR 177
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A6S7J8V3_PARCT (Post-GPI attachment to proteins factor 3 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J8V3_PARCT) HSP 1 Score: 80.1 bits (196), Expect = 8.320e-16 Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAG 280
R+ GIQE + FSVGNG+ H + + NP + W LY W+ +N W+WS+VFH RDL W+E DYF A+ I ++ VRT G
Sbjct: 100 RLLGIQEPASVFFSVGNGLGHYFGWKMYKNHVNPNYSMYNTW-KLYYWISVNAWLWSTVFHTRDLVWTERLDYFGAVSLILASIYSYFVRTVG 191
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: J5QMT9_TRIAS (Post-GPI attachment to proteins factor 3 n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5QMT9_TRIAS) HSP 1 Score: 80.5 bits (197), Expect = 8.420e-16 Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
RV G+QE F+ LFS+GN H L R P N + WL W+ +NTW+WSSVFH RD+ W+E DYF A++ + F++ A++R
Sbjct: 100 RVLGVQEPFSVLFSLGNLWVHWKGLKMLEKRV-PDSNALKPWLKAAAWIQMNTWLWSSVFHTRDVPWTEKLDYFSAMITVAFMLLYALLR 188
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A137NRV0_CONC2 (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRV0_CONC2) HSP 1 Score: 79.7 bits (195), Expect = 1.170e-15 Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYN--PPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
RV+GIQE+F+ +FS+GNG H H R + N P Y+ +L Y V INTWIWS+VFH RD++ +E DYF AL ++ F + +R
Sbjct: 88 RVFGIQEIFSVIFSIGNGYAHYVH----RSKLNRLPNNFYLINYLKGYNLVTINTWIWSTVFHCRDVRITERLDYFSALASVQFALHYCFLR 175
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: UPI00106B3D83 (post-GPI attachment to proteins factor 3-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B3D83) HSP 1 Score: 79.7 bits (195), Expect = 1.490e-15 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGP 283
R++GIQE + LFS+GNG+ H + + NP + W LY + +N W+WS+VFH RDL W+E DYF A+ I ++ + VR GP
Sbjct: 131 RLFGIQEPASVLFSIGNGLGHYFGWKMFKNHVNPHYSMYSTW-KLYYIISVNAWLWSAVFHTRDLTWTERLDYFGAVSLILASIYSSFVRIVGP 223
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A8H7SCW3_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SCW3_9FUNG) HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
R+WGIQE + LFS+GNG H Y+ R R P Y+ ++ ++ VGIN WIWS+VFH+RD +E DYF A L I + ++ ++R
Sbjct: 94 RLWGIQEPASVLFSIGNGYVHYYYFGILR-RDIPNAYYLKPFMLMFSLVGINAWIWSTVFHSRDFPLTEKLDYFSAGLFILYSLYYGVIR 182
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A0B7NDV7_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NDV7_9FUNG) HSP 1 Score: 76.6 bits (187), Expect = 7.970e-15 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
R +GIQE + LFS+GNG+ H Y+ + + Y F L LY +G+N W+WS+VFH+RD K++E DYF A L + + ++ AI+R
Sbjct: 26 RCFGIQEPASVLFSIGNGLVHAYYFRQIQKHVSWRNFYKGFML-LYTVIGMNAWLWSTVFHSRDTKFTELMDYFSAALLVLYSLYYAIIR 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87667.16300.1 >prot_H-elongata_contig87667.16300.1 ID=prot_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MGHPRAVRLAFLRRERRPTPVPPPLLSRAVQPSRELHVLLAHPLPLGGNQback to top mRNA from alignment at H-elongata_contig87667:1502..2476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87667.16300.1 ID=mRNA_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig87667:1502..2476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87667:1502..2476+ >mRNA_H-elongata_contig87667.16300.1 ID=mRNA_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig87667:1502..2476+ (Himanthalia elongata Himel1 dioecious)back to top |