mRNA_H-elongata_contig87614.16296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87614.16296.1
Unique NamemRNA_H-elongata_contig87614.16296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.150e-65
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
            VNFKS+EVKGYE+GVA+DPV+IESL+ FGTPEEVGARVLKVEQ KDGTLDTK++ T+AEKQGDLSLYTLDYFVESTRGFKHFVAKV IKDNLLYACT QA+E D+P VE++LKR+V+SFRV A
Sbjct:  153 VNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFRVLA 275          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 3.780e-60
Identity = 100/123 (81.30%), Postives = 115/123 (93.50%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
            VNFKS+EVKGYE+GVA+DPV+IESL+ FGTPEEVGARVLKVEQ KDGTLDTK++ T+AEKQGDLSLYTLDYFVE+TRGFKHFVAKV IKDNLLYACT QA+E D+P VE++LK +V+SFRVPA
Sbjct: 2018 VNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVENTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKHIVESFRVPA 2140          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.270e-37
Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
            VN+KS   +GYEIGVAVDPV+I SLD+FG+ +EVG +V+ VE GKDG L+ K++ T++E+ GD+  YT++Y+VE+T     FVAKV IKD  L+ CTG+ +  DF    S L+  V SF V A
Sbjct:   35 VNYKSPTARGYEIGVAVDPVRINSLDQFGSAQEVGTKVVNVELGKDGCLEAKLLGTSSERMGDVLAYTIEYYVENTHYTSQFVAKVIIKDGRLFVCTGKCKAKDFDTYGSALREAVGSFTVTA 157          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC)

HSP 1 Score: 120 bits (302), Expect = 8.380e-33
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVP 366
            +N+KS E+KGY +GVAVDPVKI+SL  FGTP+ VG R++ VE+ KDG +D ++++  + + G    Y ++Y  ++TRGF HF+ +V + +  L+A T Q+++ DF  V  Q+K +V +F VP
Sbjct:    7 INYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQSKQKDFDKVRDQMKAIVSTFVVP 128          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0J2K1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2K1_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 4.440e-28
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   13 SDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVES----QLKRMVDSFRVPA 369
            S   KG  +GV VDPVKI+SL+ FGTPEEV +RVL VE+G+DG LD ++ R+ A   G  S YT++YFVESTRG K ++ K  I    LY    QA+ +D+  V S    QL+ +V SFRV A
Sbjct:   13 SSPKKGVSLGVTVDPVKIDSLEAFGTPEEVASRVLAVEEGRDGVLDVQL-RSLAAHTGTPSYYTIEYFVESTRGKKVYLCKYCISQKRLYVLQTQAKVVDYDDVASDVQQQLRDIVLSFRVMA 134          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0LET4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LET4_9EUKA)

HSP 1 Score: 108 bits (269), Expect = 7.530e-27
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   25 KGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPA----VESQLKRMVDSFRV 363
            KG  +GV VDPVKI+SL+ FGTPEEV  RVL VE+G+DG LD ++ R+ A   G  S YT++YFVESTRG K ++ K  I    LY    QA+ +D+ +    V+ QL+ +V SFRV
Sbjct:   98 KGVSLGVTVDPVKIDSLEAFGTPEEVADRVLAVEEGRDGVLDVQL-RSLAADAGKPSYYTIEYFVESTRGKKVYLCKYCIAQKRLYVLQTQAKVVDYDSAASDVQQQLRAIVASFRV 213          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0QHT9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHT9_9CRYP)

HSP 1 Score: 104 bits (259), Expect = 8.370e-26
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
            VN  SD  KG E+GV+VDPVKI+++  FGTP +VG RV+ +E+ KDG L  K+I    E +  +  YT++Y  ESTRG + F+AKVAI    L+  T QA+   F A E+ L+  + SF V
Sbjct:   53 VNLLSDTSKGTELGVSVDPVKIDTVTAFGTPLQVGKRVVALERSKDGVLSAKLIAVGQEDRDGVPYYTIEYASESTRGNRRFLAKVAIVRRRLFVLTAQAKTDSFAADEAALRAGLASFAV 173          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7R9WT23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT23_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.890e-25
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
            VNF SD  KGY+ G+ VDPV+IESL +FGTPEEV ARV+  E  +DG  +  ++        D   Y L+Y  +  RG KHFV K+ +    LY  T QA+E+DF +V+ +L   + +F V
Sbjct:  172 VNFVSDTTKGYQYGITVDPVRIESLKQFGTPEEVAARVVTAEVNRDGVFEVTLVSDPIAS--DDGSYVLEYLSDGKRGKKHFVTKIFVSKKKLYVLTAQAKEVDFASVKEELFGTLTTFAV 290          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S2WW61_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW61_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.340e-24
Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTT-AEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
            VN KS+ V+GY  G+AVDP+KI SL+ FG P  VG RV+ VE+ KDG L   ++    A+    +  Y LDY  ESTRG   F++++AI++  L+  T Q ++ DF +VE++ + M  SF +
Sbjct:  105 VNVKSEAVRGYSAGLAVDPIKIPSLEAFGDPTTVGNRVVGVERRKDGVLSADLVGAERAQDARGIVYYDLDYVAESTRGNNRFLSRIAIREGKLHVFTVQTKQADFGSVEAEARDMAQSFHL 226          
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S1H9V5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9V5_HEMAN)

HSP 1 Score: 99.0 bits (245), Expect = 2.520e-24
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   28 GYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
            G E+GVAVDPV I+S+ KFGT  EV  RV+ VE+ KDG    +++  + +++G    YT++Y  +S+RG KHF+A V I D  L+A T QA+  +F   E+ L+ +V SF V
Sbjct:    6 GTEVGVAVDPVTIDSIAKFGTSREVAGRVIGVERKKDGVTGARLVGVSEDERGGSMYYTIEYESKSSRGDKHFIACVTIADKKLFAMTAQAKIANFEEAEADLRAIVASFLV 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF2_ECTSI2.150e-6582.11Similar to photosystem II oxygen evolving complex ... [more]
A0A6H5JQE7_9PHAE3.780e-6081.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB55_9STRA3.270e-3752.03PsbP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A0G4EN49_VITBC8.380e-3344.26PsbP domain-containing protein n=1 Tax=Vitrella br... [more]
A0A7S0J2K1_9EUKA4.440e-2850.41Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LET4_9EUKA7.530e-2750.43Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0QHT9_9CRYP8.370e-2646.28Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7R9WT23_9STRA2.890e-2543.80Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2WW61_9STRA2.340e-2442.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1H9V5_HEMAN2.520e-2444.64Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87614contigH-elongata_contig87614:1115..2143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D7FNF2
EggNOG free text desc.PsbP
EggNOG OGs2E2MJ@1,2S9US@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to photosystem II oxygen evolving complex protein PsbP in Synechococcus
Ec32 orthologEc-01_005660.1
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87614.16296.1prot_H-elongata_contig87614.16296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87614 1115..2143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.387427-CDS-H-elongata_contig87614:1114..11621622931277.387427-CDS-H-elongata_contig87614:1114..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1115..1162 +
1691679770.2244177-CDS-H-elongata_contig87614:1114..11621691679770.2244177-CDS-H-elongata_contig87614:1114..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1115..1162 +
1622931277.404611-CDS-H-elongata_contig87614:1505..16641622931277.404611-CDS-H-elongata_contig87614:1505..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1506..1664 +
1691679770.2377388-CDS-H-elongata_contig87614:1505..16641691679770.2377388-CDS-H-elongata_contig87614:1505..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1506..1664 +
1622931277.4220092-CDS-H-elongata_contig87614:1978..21431622931277.4220092-CDS-H-elongata_contig87614:1978..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1979..2143 +
1691679770.2454493-CDS-H-elongata_contig87614:1978..21431691679770.2454493-CDS-H-elongata_contig87614:1978..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87614 1979..2143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87614.16296.1

>prot_H-elongata_contig87614.16296.1 ID=prot_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLD
TKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQA
REIDFPAVESQLKRMVDSFRVPA*
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mRNA from alignment at H-elongata_contig87614:1115..2143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87614.16296.1 ID=mRNA_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig87614:1115..2143+ (Himanthalia elongata Himel1 dioecious)
GTCAACTTCAAGAGCGATGAGGTCAAGGGCTACGAGATTGGCGTTGCGGT GAGCCAAAATAATAACGTCAACGGCTACTGTACACTGTCCGCCGACGTTT CTGCGCGCTGTTTTTGAAATCGCGTCGTCGGAGCGATGAATCGAACATTT TAAGGAAGTACCCTATTATAGACGGCGTTAGCTCTTTATTTTTATTTTTG CTTTTAGTTCTTGTTTATCAAGACGTCGCTGGCGCTTTTACTTATTTCGA TTGCCTGCACCACGTGTACGTGTGACTGCCGCGACGAGATTGCCCGCAAT ACTACCTAACAAGTCAAAAGTTTCCAAGAATACGGTGGACTGCCGGTCGA GGTTATCGCGTCGCACTCGACCCTGTAACGATCGTCGGAAGGTTGACCCG GTGAAGATCGAATCCCTCGATAAATTTGGAACTCCCGAAGAGGTCGGCGC GAGGGTGCTGAAGGTGGAGCAGGGAAAAGACGGCACGCTTGACACCAAGA TGATCCGCACAACGGCAGAGAAACAGGGCGATCTTTCTCTATATACCCTG GTAAGGAGGCAAAATAAGCCCGGCTCCGCTCGGACGCGCTCAGCGTCAAC GTCGACCGACCAATCAGAGAGCGAGCTCTGACTTAAAAACCAAAACCGTC ACGGGATAACAAAATTTTCTTTATGCTACGAAAGGTCTACAAAATATTCT TATCAAACTCGATGACCCTAAGCTCTGATAATCCCGACTAGCAGGGGTCC CTTTGATGTGGTTTACTTTGCCTCGATCGATGACTCCACGGCTTGGCTCG TCGACATCCTGCGCGCGTTTGGGGTGGGGGTGGGGGGCTGCTGCATCCCG TTCCTTTCCATCAGGATTATTTTGTGGAGTCTACGAGGGGTTTCAAGCAC TTCGTGGCAAAGGTGGCCATTAAGGATAATCTCCTGTACGCCTGCACCGG TCAAGCGAGAGAAATCGACTTCCCCGCGGTGGAGAGTCAGCTCAAGCGGA TGGTCGACAGCTTCCGCGTACCCGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig87614:1115..2143+

>mRNA_H-elongata_contig87614.16296.1 ID=mRNA_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig87614:1115..2143+ (Himanthalia elongata Himel1 dioecious)
GTCAACTTCAAGAGCGATGAGGTCAAGGGCTACGAGATTGGCGTTGCGGT
CAACTTCAAGAGCGATGAGGTCAAGGGCTACGAGATTGGCGTTGCGGTTG
ACCCGGTGAAGATCGAATCCCTCGATAAATTTGGAACTCCCGAAGAGGTC
GGCGCGAGGGTGCTGAAGGTGGAGCAGGGAAAAGACGGCACGCTTGACAC
CAAGATGATCCGCACAACGGCAGAGAAACAGGGCGATCTTTCTCTATATA
CCCTGGTTGACCCGGTGAAGATCGAATCCCTCGATAAATTTGGAACTCCC
GAAGAGGTCGGCGCGAGGGTGCTGAAGGTGGAGCAGGGAAAAGACGGCAC
GCTTGACACCAAGATGATCCGCACAACGGCAGAGAAACAGGGCGATCTTT
CTCTATATACCCTGGATTATTTTGTGGAGTCTACGAGGGGTTTCAAGCAC
TTCGTGGCAAAGGTGGCCATTAAGGATAATCTCCTGTACGCCTGCACCGG
TCAAGCGAGAGAAATCGACTTCCCCGCGGTGGAGAGTCAGCTCAAGCGGA
TGGTCGACAGCTTCCGCGTACCCGCGTGAGATTATTTTGTGGAGTCTACG
AGGGGTTTCAAGCACTTCGTGGCAAAGGTGGCCATTAAGGATAATCTCCT
GTACGCCTGCACCGGTCAAGCGAGAGAAATCGACTTCCCCGCGGTGGAGA
GTCAGCTCAAGCGGATGGTCGACAGCTTCCGCGTACCCGCGTGA
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