mRNA_H-elongata_contig87614.16296.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI) HSP 1 Score: 208 bits (529), Expect = 2.150e-65 Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
VNFKS+EVKGYE+GVA+DPV+IESL+ FGTPEEVGARVLKVEQ KDGTLDTK++ T+AEKQGDLSLYTLDYFVESTRGFKHFVAKV IKDNLLYACT QA+E D+P VE++LKR+V+SFRV A
Sbjct: 153 VNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFRVLA 275
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE) HSP 1 Score: 209 bits (531), Expect = 3.780e-60 Identity = 100/123 (81.30%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
VNFKS+EVKGYE+GVA+DPV+IESL+ FGTPEEVGARVLKVEQ KDGTLDTK++ T+AEKQGDLSLYTLDYFVE+TRGFKHFVAKV IKDNLLYACT QA+E D+P VE++LK +V+SFRVPA
Sbjct: 2018 VNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVENTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKHIVESFRVPA 2140
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.270e-37 Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVPA 369
VN+KS +GYEIGVAVDPV+I SLD+FG+ +EVG +V+ VE GKDG L+ K++ T++E+ GD+ YT++Y+VE+T FVAKV IKD L+ CTG+ + DF S L+ V SF V A
Sbjct: 35 VNYKSPTARGYEIGVAVDPVRINSLDQFGSAQEVGTKVVNVELGKDGCLEAKLLGTSSERMGDVLAYTIEYYVENTHYTSQFVAKVIIKDGRLFVCTGKCKAKDFDTYGSALREAVGSFTVTA 157
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC) HSP 1 Score: 120 bits (302), Expect = 8.380e-33 Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRVP 366
+N+KS E+KGY +GVAVDPVKI+SL FGTP+ VG R++ VE+ KDG +D ++++ + + G Y ++Y ++TRGF HF+ +V + + L+A T Q+++ DF V Q+K +V +F VP
Sbjct: 7 INYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQSKQKDFDKVRDQMKAIVSTFVVP 128
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0J2K1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2K1_9EUKA) HSP 1 Score: 108 bits (271), Expect = 4.440e-28 Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 13 SDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVES----QLKRMVDSFRVPA 369
S KG +GV VDPVKI+SL+ FGTPEEV +RVL VE+G+DG LD ++ R+ A G S YT++YFVESTRG K ++ K I LY QA+ +D+ V S QL+ +V SFRV A
Sbjct: 13 SSPKKGVSLGVTVDPVKIDSLEAFGTPEEVASRVLAVEEGRDGVLDVQL-RSLAAHTGTPSYYTIEYFVESTRGKKVYLCKYCISQKRLYVLQTQAKVVDYDDVASDVQQQLRDIVLSFRVMA 134
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0LET4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LET4_9EUKA) HSP 1 Score: 108 bits (269), Expect = 7.530e-27 Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 25 KGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPA----VESQLKRMVDSFRV 363
KG +GV VDPVKI+SL+ FGTPEEV RVL VE+G+DG LD ++ R+ A G S YT++YFVESTRG K ++ K I LY QA+ +D+ + V+ QL+ +V SFRV
Sbjct: 98 KGVSLGVTVDPVKIDSLEAFGTPEEVADRVLAVEEGRDGVLDVQL-RSLAADAGKPSYYTIEYFVESTRGKKVYLCKYCIAQKRLYVLQTQAKVVDYDSAASDVQQQLRAIVASFRV 213
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S0QHT9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHT9_9CRYP) HSP 1 Score: 104 bits (259), Expect = 8.370e-26 Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
VN SD KG E+GV+VDPVKI+++ FGTP +VG RV+ +E+ KDG L K+I E + + YT++Y ESTRG + F+AKVAI L+ T QA+ F A E+ L+ + SF V
Sbjct: 53 VNLLSDTSKGTELGVSVDPVKIDTVTAFGTPLQVGKRVVALERSKDGVLSAKLIAVGQEDRDGVPYYTIEYASESTRGNRRFLAKVAIVRRRLFVLTAQAKTDSFAADEAALRAGLASFAV 173
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7R9WT23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT23_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.890e-25 Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
VNF SD KGY+ G+ VDPV+IESL +FGTPEEV ARV+ E +DG + ++ D Y L+Y + RG KHFV K+ + LY T QA+E+DF +V+ +L + +F V
Sbjct: 172 VNFVSDTTKGYQYGITVDPVRIESLKQFGTPEEVAARVVTAEVNRDGVFEVTLVSDPIAS--DDGSYVLEYLSDGKRGKKHFVTKIFVSKKKLYVLTAQAKEVDFASVKEELFGTLTTFAV 290
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S2WW61_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW61_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.340e-24 Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTT-AEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
VN KS+ V+GY G+AVDP+KI SL+ FG P VG RV+ VE+ KDG L ++ A+ + Y LDY ESTRG F++++AI++ L+ T Q ++ DF +VE++ + M SF +
Sbjct: 105 VNVKSEAVRGYSAGLAVDPIKIPSLEAFGDPTTVGNRVVGVERRKDGVLSADLVGAERAQDARGIVYYDLDYVAESTRGNNRFLSRIAIREGKLHVFTVQTKQADFGSVEAEARDMAQSFHL 226
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Match: A0A7S1H9V5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9V5_HEMAN) HSP 1 Score: 99.0 bits (245), Expect = 2.520e-24 Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 28 GYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDTKMIRTTAEKQGDLSLYTLDYFVESTRGFKHFVAKVAIKDNLLYACTGQAREIDFPAVESQLKRMVDSFRV 363
G E+GVAVDPV I+S+ KFGT EV RV+ VE+ KDG +++ + +++G YT++Y +S+RG KHF+A V I D L+A T QA+ +F E+ L+ +V SF V
Sbjct: 6 GTEVGVAVDPVTIDSIAKFGTSREVAGRVIGVERKKDGVTGARLVGVSEDERGGSMYYTIEYESKSSRGDKHFIACVTIADKKLFAMTAQAKIANFEEAEADLRAIVASFLV 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87614.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87614.16296.1 >prot_H-elongata_contig87614.16296.1 ID=prot_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp VNFKSDEVKGYEIGVAVDPVKIESLDKFGTPEEVGARVLKVEQGKDGTLDback to top mRNA from alignment at H-elongata_contig87614:1115..2143+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87614.16296.1 ID=mRNA_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig87614:1115..2143+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87614:1115..2143+ >mRNA_H-elongata_contig87614.16296.1 ID=mRNA_H-elongata_contig87614.16296.1|Name=mRNA_H-elongata_contig87614.16296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig87614:1115..2143+ (Himanthalia elongata Himel1 dioecious)back to top |