mRNA_H-elongata_contig87573.16290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87573.16290.1
Unique NamemRNA_H-elongata_contig87573.16290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87573.16290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87573contigH-elongata_contig87573:1382..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931276.729573-CDS-H-elongata_contig87573:1381..17891622931276.729573-CDS-H-elongata_contig87573:1381..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87573 1382..1789 +
1691679769.975712-CDS-H-elongata_contig87573:1381..17891691679769.975712-CDS-H-elongata_contig87573:1381..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87573 1382..1789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87573.16290.1prot_H-elongata_contig87573.16290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87573 1382..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87573.16290.1

>prot_H-elongata_contig87573.16290.1 ID=prot_H-elongata_contig87573.16290.1|Name=mRNA_H-elongata_contig87573.16290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
LAEANVARNAAVRENKAWQHENRVLHEEYKEHLSQSVEVLRENTVLKEQI
AVSNDEYSRITASTKAYVKKLLGTKAAHQALEEGLAAGGVCPRSPASGDV
HHRSSASGAFGSNRSVETFVGGWGNGAIVSGRRQQQ
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mRNA from alignment at H-elongata_contig87573:1382..1791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87573.16290.1 ID=mRNA_H-elongata_contig87573.16290.1|Name=mRNA_H-elongata_contig87573.16290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=410bp|location=Sequence derived from alignment at H-elongata_contig87573:1382..1791+ (Himanthalia elongata Himel1 dioecious)
CTTGCCGAAGCGAACGTGGCACGGAACGCGGCGGTAAGAGAGAACAAGGC
CTGGCAGCACGAAAACCGTGTGCTCCACGAGGAGTACAAGGAGCACCTTT
CACAGAGCGTCGAGGTCCTCCGAGAGAACACCGTGCTCAAGGAGCAGATC
GCGGTCTCCAACGACGAGTATTCGAGGATCACGGCGTCGACCAAGGCTTA
TGTCAAGAAGCTCCTGGGAACGAAAGCAGCGCACCAGGCTCTTGAAGAGG
GGCTCGCCGCGGGCGGGGTATGCCCCCGGAGCCCGGCCTCGGGCGATGTA
CATCACCGAAGTTCGGCCTCGGGGGCATTCGGCAGTAATCGAAGCGTCGA
GACTTTCGTCGGGGGATGGGGCAACGGCGCGATCGTTTCTGGTCGGCGGC
AGCAGCAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig87573:1382..1791+

>mRNA_H-elongata_contig87573.16290.1 ID=mRNA_H-elongata_contig87573.16290.1|Name=mRNA_H-elongata_contig87573.16290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig87573:1382..1791+ (Himanthalia elongata Himel1 dioecious)
CTTGCCGAAGCGAACGTGGCACGGAACGCGGCGGTAAGAGAGAACAAGGC
CTGGCAGCACGAAAACCGTGTGCTCCACGAGGAGTACAAGGAGCACCTTT
CACAGAGCGTCGAGGTCCTCCGAGAGAACACCGTGCTCAAGGAGCAGATC
GCGGTCTCCAACGACGAGTATTCGAGGATCACGGCGTCGACCAAGGCTTA
TGTCAAGAAGCTCCTGGGAACGAAAGCAGCGCACCAGGCTCTTGAAGAGG
GGCTCGCCGCGGGCGGGGTATGCCCCCGGAGCCCGGCCTCGGGCGATGTA
CATCACCGAAGTTCGGCCTCGGGGGCATTCGGCAGTAATCGAAGCGTCGA
GACTTTCGTCGGGGGATGGGGCAACGGCGCGATCGTTTCTGGTCGGCGGC
AGCAGCAGCTTGCCGAAGCGAACGTGGCACGGAACGCGGCGGTAAGAGAG
AACAAGGCCTGGCAGCACGAAAACCGTGTGCTCCACGAGGAGTACAAGGA
GCACCTTTCACAGAGCGTCGAGGTCCTCCGAGAGAACACCGTGCTCAAGG
AGCAGATCGCGGTCTCCAACGACGAGTATTCGAGGATCACGGCGTCGACC
AAGGCTTATGTCAAGAAGCTCCTGGGAACGAAAGCAGCGCACCAGGCTCT
TGAAGAGGGGCTCGCCGCGGGCGGGGTATGCCCCCGGAGCCCGGCCTCGG
GCGATGTACATCACCGAAGTTCGGCCTCGGGGGCATTCGGCAGTAATCGA
AGCGTCGAGACTTTCGTCGGGGGATGGGGCAACGGCGCGATCGTTTCTGG
TCGGCGGCAGCAGCAG
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