mRNA_H-elongata_contig87517.16287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87517.16287.1
Unique NamemRNA_H-elongata_contig87517.16287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87517.16287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87517contigH-elongata_contig87517:683..1122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931276.369199-UTR-H-elongata_contig87517:682..6961622931276.369199-UTR-H-elongata_contig87517:682..696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87517 683..696 +
1691679769.853444-UTR-H-elongata_contig87517:682..6961691679769.853444-UTR-H-elongata_contig87517:682..696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87517 683..696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931276.4064128-CDS-H-elongata_contig87517:696..11221622931276.4064128-CDS-H-elongata_contig87517:696..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87517 697..1122 +
1691679769.8706133-CDS-H-elongata_contig87517:696..11221691679769.8706133-CDS-H-elongata_contig87517:696..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87517 697..1122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87517.16287.1prot_H-elongata_contig87517.16287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87517 697..1122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87517.16287.1

>prot_H-elongata_contig87517.16287.1 ID=prot_H-elongata_contig87517.16287.1|Name=mRNA_H-elongata_contig87517.16287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MEIIREQAEVLTRCSEELAAQTQCYPDEDKSETEIQLQQARIEIKGLREQ
LNEVRHAPAVSSVCPHPMVAHLACSILGKTCAVAVVVAVAVTVTAAIAAM
SMIIPLEFSAHRMPYVIHLHVFVCLRRRETWMTSTYWSRGW*
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mRNA from alignment at H-elongata_contig87517:683..1122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87517.16287.1 ID=mRNA_H-elongata_contig87517.16287.1|Name=mRNA_H-elongata_contig87517.16287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=440bp|location=Sequence derived from alignment at H-elongata_contig87517:683..1122+ (Himanthalia elongata Himel1 dioecious)
GGACCGTTCCGGTGATGGAAATCATCCGGGAACAGGCCGAGGTGCTAACC
CGTTGCTCTGAGGAGCTTGCGGCCCAAACACAGTGCTATCCCGATGAAGA
CAAATCCGAAACGGAGATCCAGCTCCAGCAGGCCAGGATAGAAATAAAAG
GATTACGTGAGCAGCTAAATGAGGTGAGGCATGCTCCTGCCGTGAGCTCC
GTGTGTCCTCATCCAATGGTCGCTCATCTCGCTTGCTCAATACTCGGAAA
AACTTGCGCCGTTGCCGTTGTCGTCGCCGTTGCTGTTACGGTTACGGCTG
CTATTGCTGCCATGTCTATGATCATACCCTTAGAATTTTCCGCCCACCGT
ATGCCATACGTTATACATTTGCATGTCTTCGTGTGTCTCAGGCGGAGGGA
AACCTGGATGACCAGTACCTACTGGTCAAGAGGATGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig87517:683..1122+

>mRNA_H-elongata_contig87517.16287.1 ID=mRNA_H-elongata_contig87517.16287.1|Name=mRNA_H-elongata_contig87517.16287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig87517:683..1122+ (Himanthalia elongata Himel1 dioecious)
ATGGAAATCATCCGGGAACAGGCCGAGGTGCTAACCCGTTGCTCTGAGGA
GCTTGCGGCCCAAACACAGTGCTATCCCGATGAAGACAAATCCGAAACGG
AGATCCAGCTCCAGCAGGCCAGGATAGAAATAAAAGGATTACGTGAGCAG
CTAAATGAGGTGAGGCATGCTCCTGCCGTGAGCTCCGTGTGTCCTCATCC
AATGGTCGCTCATCTCGCTTGCTCAATACTCGGAAAAACTTGCGCCGTTG
CCGTTGTCGTCGCCGTTGCTGTTACGGTTACGGCTGCTATTGCTGCCATG
TCTATGATCATACCCTTAGAATTTTCCGCCCACCGTATGCCATACGTTAT
ACATTTGCATGTCTTCGTGTGTCTCAGGCGGAGGGAAACCTGGATGACCA
GTACCTACTGGTCAAGAGGATGGTAAATGGAAATCATCCGGGAACAGGCC
GAGGTGCTAACCCGTTGCTCTGAGGAGCTTGCGGCCCAAACACAGTGCTA
TCCCGATGAAGACAAATCCGAAACGGAGATCCAGCTCCAGCAGGCCAGGA
TAGAAATAAAAGGATTACGTGAGCAGCTAAATGAGGTGAGGCATGCTCCT
GCCGTGAGCTCCGTGTGTCCTCATCCAATGGTCGCTCATCTCGCTTGCTC
AATACTCGGAAAAACTTGCGCCGTTGCCGTTGTCGTCGCCGTTGCTGTTA
CGGTTACGGCTGCTATTGCTGCCATGTCTATGATCATACCCTTAGAATTT
TCCGCCCACCGTATGCCATACGTTATACATTTGCATGTCTTCGTGTGTCT
CAGGCGGAGGGAAACCTGGATGACCAGTACCTACTGGTCAAGAGGATGGT
AA
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