mRNA_H-elongata_contig87456.16282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87456.16282.1
Unique NamemRNA_H-elongata_contig87456.16282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.510e-25
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 LMTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 216
            LMTRLS+   +FATGMV+AQH+N+ LCMEFLEGLA++ G  KRPRIR RLL   SV EFKARWNLPIYFQLR
Sbjct:  495 LMTRLSS---IFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563
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BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.740e-24
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 LMTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 216
            LMTRLS+   +FATGMV+AQH+N+ LCMEFLEGLA++ G  KR RIR RLL   SV EFKARWNLPIYFQLR
Sbjct:  502 LMTRLSS---IFATGMVTAQHSNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570
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BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.470e-7
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:   31 VFATGMVSAQHANYSLCMEFLEGLASV--GGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 216
            +FATG+    H NY+L       LA    GG  +    + RL AH +  +F+ARWNLP+YFQLR
Sbjct:  447 IFATGLADVFHRNYALSQALPRRLAEACSGGGREGGSAQQRLEAHPASADFRARWNLPVYFQLR 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMA5_ECTSI4.510e-2573.61Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE3.740e-2472.22Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A835ZA59_9STRA2.470e-743.75Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87456contigH-elongata_contig87456:608..826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D8LMA5
Preferred nameCOG2
KEGG koko:K20289
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2307@1,KOG2307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size216
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931275.019259-UTR-H-elongata_contig87456:607..6101622931275.019259-UTR-H-elongata_contig87456:607..610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87456 608..610 +
1691679769.2907205-UTR-H-elongata_contig87456:607..6101691679769.2907205-UTR-H-elongata_contig87456:607..610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87456 608..610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931275.0371377-CDS-H-elongata_contig87456:610..8261622931275.0371377-CDS-H-elongata_contig87456:610..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87456 611..826 +
1691679769.3013837-CDS-H-elongata_contig87456:610..8261691679769.3013837-CDS-H-elongata_contig87456:610..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87456 611..826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87456.16282.1prot_H-elongata_contig87456.16282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87456 611..826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87456.16282.1

>prot_H-elongata_contig87456.16282.1 ID=prot_H-elongata_contig87456.16282.1|Name=mRNA_H-elongata_contig87456.16282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLL
AHASVQEFKARWNLPIYFQLR*
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mRNA from alignment at H-elongata_contig87456:608..826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87456.16282.1 ID=mRNA_H-elongata_contig87456.16282.1|Name=mRNA_H-elongata_contig87456.16282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig87456:608..826+ (Himanthalia elongata Himel1 dioecious)
TTGATGACGAGGCTTTCGGCGACTGTAGGCGTTTTTGCGACGGGGATGGT
GTCTGCCCAGCACGCCAACTACTCGCTGTGCATGGAGTTTCTGGAGGGGC
TCGCAAGTGTCGGCGGTGAGGGAAAACGTCCCCGCATCCGAGCGAGGCTC
CTGGCGCACGCCTCCGTGCAAGAGTTCAAGGCCCGTTGGAACCTGCCTAT
CTACTTCCAGCTGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig87456:608..826+

>mRNA_H-elongata_contig87456.16282.1 ID=mRNA_H-elongata_contig87456.16282.1|Name=mRNA_H-elongata_contig87456.16282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig87456:608..826+ (Himanthalia elongata Himel1 dioecious)
ATGACGAGGCTTTCGGCGACTGTAGGCGTTTTTGCGACGGGGATGGTGTC
TGCCCAGCACGCCAACTACTCGCTGTGCATGGAGTTTCTGGAGGGGCTCG
CAAGTGTCGGCGGTGAGGGAAAACGTCCCCGCATCCGAGCGAGGCTCCTG
GCGCACGCCTCCGTGCAAGAGTTCAAGGCCCGTTGGAACCTGCCTATCTA
CTTCCAGCTGAGGTGAATGACGAGGCTTTCGGCGACTGTAGGCGTTTTTG
CGACGGGGATGGTGTCTGCCCAGCACGCCAACTACTCGCTGTGCATGGAG
TTTCTGGAGGGGCTCGCAAGTGTCGGCGGTGAGGGAAAACGTCCCCGCAT
CCGAGCGAGGCTCCTGGCGCACGCCTCCGTGCAAGAGTTCAAGGCCCGTT
GGAACCTGCCTATCTACTTCCAGCTGAGGTGA
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