mRNA_H-elongata_contig87453.16281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87453.16281.1
Unique NamemRNA_H-elongata_contig87453.16281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87453.16281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87453contigH-elongata_contig87453:880..2494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1237
Cds size834
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87453.16281.1prot_H-elongata_contig87453.16281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87453 880..1713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931274.8580122-CDS-H-elongata_contig87453:879..17131622931274.8580122-CDS-H-elongata_contig87453:879..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87453 880..1713 -
1691679769.216599-CDS-H-elongata_contig87453:879..17131691679769.216599-CDS-H-elongata_contig87453:879..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87453 880..1713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931274.8715336-UTR-H-elongata_contig87453:1713..17221622931274.8715336-UTR-H-elongata_contig87453:1713..1722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 1714..1722 -
1691679769.229178-UTR-H-elongata_contig87453:1713..17221691679769.229178-UTR-H-elongata_contig87453:1713..1722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 1714..1722 -
1622931274.8842678-UTR-H-elongata_contig87453:1742..20151622931274.8842678-UTR-H-elongata_contig87453:1742..2015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 1743..2015 -
1691679769.2397876-UTR-H-elongata_contig87453:1742..20151691679769.2397876-UTR-H-elongata_contig87453:1742..2015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 1743..2015 -
1622931274.8983667-UTR-H-elongata_contig87453:2375..24941622931274.8983667-UTR-H-elongata_contig87453:2375..2494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 2376..2494 -
1691679769.2496831-UTR-H-elongata_contig87453:2375..24941691679769.2496831-UTR-H-elongata_contig87453:2375..2494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87453 2376..2494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87453.16281.1

>prot_H-elongata_contig87453.16281.1 ID=prot_H-elongata_contig87453.16281.1|Name=mRNA_H-elongata_contig87453.16281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
METDDQCSERRPRHGVAAEPAVSMTMGRRCGSGGSSVAGMATTVQPDGEE
QVVLPLMLDDNDDEEEDDRNSEGFGDTTSRRAPSHLLAGLAPAAVRLVKE
RVYAEARVRYACLYGARPFAVFAPDAPAALATPGAPEQTVPSAASPSPEE
TQPASSTVLLSPSVIVDFGIKLSEWDGNKVGTATGKGKTVSKIKGEARVS
VSLEEEEEEELSVAMEAAPSAGVAARTASAARKSESAGSRHGASQREGRR
GRGGLVGAPGVAGLASGEASGSAAAAAA
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mRNA from alignment at H-elongata_contig87453:880..2494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87453.16281.1 ID=mRNA_H-elongata_contig87453.16281.1|Name=mRNA_H-elongata_contig87453.16281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1615bp|location=Sequence derived from alignment at H-elongata_contig87453:880..2494- (Himanthalia elongata Himel1 dioecious)
GACGTTTCGAGTGTTTCGCGAAGTTCGGAGGGAGAGGGACGGCGGCCGCG
TGTTCACCGTTCGAGTGGCGGAGGAAAAAAATGGAGACAGGACTCTAGGA
AACCCACGTACGAGACAAGGCACGTGACGTCACCACGTCCTGGCCGCTCA
GCTGTTTACCCGCACAGTATCATATTATATTATACCATCACTCATACAGC
AGTCCCGAGTTGAATCCCTGGAAAACCCACTGTTTTCACCGTTGAAAACG
TGAGGACACGAGTGGGTACGAGTGCAGCCATTGGTTGACGTGGAGACGTT
TCAATCGCGATAAAAAGCCTAAGCGTGAACCAGGGAGAGATGGGGAGATC
CTTGTACCTATACAGTATGTATATATAAAGAAACTAGATGTGTAGGTAAT
GTGCTACTAGACGACGGGTGACGCTGCCTTGTCAAGCCTACGCCCTCTCC
CCCCCCCTCTTTCCCTCCCTATCTTGCAGGGCCTGCCTCTAGCAAAACTC
AATACCGAGCGGTGCGAGGGGGCGCGCGAGACCCCTCCTCGACGGGGGCT
CTAAGTGAAGGACCCCCCGGGGGAACGAACGCATCCGAGGCCCTCCGGAT
CCTGGGCCTGCCGCGCAAGGCGACTAGTATGATCCTGCGGCGCATCGACC
CCGAAGATCGAGAGCGACTCCTCGGCGATGATTTTACGGCAAGGTCGCGA
CGCGGCGCTGGTGACGCGATCTTGAGATCGAGGATGCCTGTCGAGACTGG
CGGTCATTGTGGTGATGGCGAGGTGTCGATAATGGAGACAGATGATCAAT
GTTCGGAAAGGCGACCGCGGCATGGTGTTGCGGCCGAGCCCGCGGTGTCG
ATGACGATGGGTCGGCGCTGCGGCTCCGGCGGTAGCAGCGTGGCGGGGAT
GGCCACGACTGTGCAGCCTGACGGAGAAGAACAGGTCGTGTTGCCGCTGA
TGCTAGACGACAACGACGACGAGGAGGAGGATGACAGAAACAGCGAAGGC
TTTGGGGACACCACGAGTCGCCGTGCCCCCTCCCACCTGCTCGCTGGCCT
CGCGCCCGCCGCCGTTCGCCTGGTCAAGGAGCGCGTGTACGCCGAAGCGA
GAGTGCGATACGCATGCCTGTACGGGGCTCGACCGTTCGCTGTTTTCGCG
CCGGATGCGCCAGCGGCGTTAGCAACTCCAGGGGCGCCAGAGCAAACTGT
ACCATCAGCAGCATCACCATCACCAGAAGAAACGCAACCGGCATCATCCA
CGGTGCTCCTTTCTCCTTCTGTAATCGTGGATTTCGGGATCAAATTATCA
GAGTGGGACGGCAACAAAGTGGGGACCGCTACGGGCAAGGGTAAGACTGT
GTCGAAAATAAAGGGGGAAGCGAGGGTTTCTGTCTCGCTGGAGGAGGAGG
AGGAGGAAGAGTTATCGGTGGCGATGGAGGCAGCACCATCAGCAGGAGTA
GCAGCACGGACGGCAAGCGCAGCGAGAAAAAGCGAGAGTGCAGGAAGCAG
ACACGGGGCAAGTCAAAGGGAAGGACGGAGGGGTAGGGGAGGACTGGTGG
GAGCACCAGGAGTGGCTGGCCTCGCAAGCGGTGAAGCAAGCGGATCGGCG
GCAGCGGCAGCAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig87453:880..2494-

>mRNA_H-elongata_contig87453.16281.1 ID=mRNA_H-elongata_contig87453.16281.1|Name=mRNA_H-elongata_contig87453.16281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig87453:880..2494- (Himanthalia elongata Himel1 dioecious)
ATGGAGACAGATGATCAATGTTCGGAAAGGCGACCGCGGCATGGTGTTGC
GGCCGAGCCCGCGGTGTCGATGACGATGGGTCGGCGCTGCGGCTCCGGCG
GTAGCAGCGTGGCGGGGATGGCCACGACTGTGCAGCCTGACGGAGAAGAA
CAGGTCGTGTTGCCGCTGATGCTAGACGACAACGACGACGAGGAGGAGGA
TGACAGAAACAGCGAAGGCTTTGGGGACACCACGAGTCGCCGTGCCCCCT
CCCACCTGCTCGCTGGCCTCGCGCCCGCCGCCGTTCGCCTGGTCAAGGAG
CGCGTGTACGCCGAAGCGAGAGTGCGATACGCATGCCTGTACGGGGCTCG
ACCGTTCGCTGTTTTCGCGCCGGATGCGCCAGCGGCGTTAGCAACTCCAG
GGGCGCCAGAGCAAACTGTACCATCAGCAGCATCACCATCACCAGAAGAA
ACGCAACCGGCATCATCCACGGTGCTCCTTTCTCCTTCTGTAATCGTGGA
TTTCGGGATCAAATTATCAGAGTGGGACGGCAACAAAGTGGGGACCGCTA
CGGGCAAGGGTAAGACTGTGTCGAAAATAAAGGGGGAAGCGAGGGTTTCT
GTCTCGCTGGAGGAGGAGGAGGAGGAAGAGTTATCGGTGGCGATGGAGGC
AGCACCATCAGCAGGAGTAGCAGCACGGACGGCAAGCGCAGCGAGAAAAA
GCGAGAGTGCAGGAAGCAGACACGGGGCAAGTCAAAGGGAAGGACGGAGG
GGTAGGGGAGGACTGGTGGGAGCACCAGGAGTGGCTGGCCTCGCAAGCGG
TGAAGCAAGCGGATCGGCGGCAGCGGCAGCAGCGATGGAGACAGATGATC
AATGTTCGGAAAGGCGACCGCGGCATGGTGTTGCGGCCGAGCCCGCGGTG
TCGATGACGATGGGTCGGCGCTGCGGCTCCGGCGGTAGCAGCGTGGCGGG
GATGGCCACGACTGTGCAGCCTGACGGAGAAGAACAGGTCGTGTTGCCGC
TGATGCTAGACGACAACGACGACGAGGAGGAGGATGACAGAAACAGCGAA
GGCTTTGGGGACACCACGAGTCGCCGTGCCCCCTCCCACCTGCTCGCTGG
CCTCGCGCCCGCCGCCGTTCGCCTGGTCAAGGAGCGCGTGTACGCCGAAG
CGAGAGTGCGATACGCATGCCTGTACGGGGCTCGACCGTTCGCTGTTTTC
GCGCCGGATGCGCCAGCGGCGTTAGCAACTCCAGGGGCGCCAGAGCAAAC
TGTACCATCAGCAGCATCACCATCACCAGAAGAAACGCAACCGGCATCAT
CCACGGTGCTCCTTTCTCCTTCTGTAATCGTGGATTTCGGGATCAAATTA
TCAGAGTGGGACGGCAACAAAGTGGGGACCGCTACGGGCAAGGGTAAGAC
TGTGTCGAAAATAAAGGGGGAAGCGAGGGTTTCTGTCTCGCTGGAGGAGG
AGGAGGAGGAAGAGTTATCGGTGGCGATGGAGGCAGCACCATCAGCAGGA
GTAGCAGCACGGACGGCAAGCGCAGCGAGAAAAAGCGAGAGTGCAGGAAG
CAGACACGGGGCAAGTCAAAGGGAAGGACGGAGGGGTAGGGGAGGACTGG
TGGGAGCACCAGGAGTGGCTGGCCTCGCAAGCGGTGAAGCAAGCGGATCG
GCGGCAGCGGCAGCAGCG
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