mRNA_H-elongata_contig87434.16278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87434.16278.1
Unique NamemRNA_H-elongata_contig87434.16278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: D7G2K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.760e-18
Identity = 52/99 (52.53%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEER--------------AGTVEYHVVGRVKKKTIFKTRPKPLIRKLG 255
            GK  LVI NHKLEGK A+EPKPLLVLRKV V    ND + G                            A  VEY VVGRV +KTIFKTRPKPLI+KLG
Sbjct:   27 GKAMLVISNHKLEGKAASEPKPLLVLRKVVVD--VNDENCGXXXXXXXXXXXXXXXXXXXXXXXXXXPPAQRVEYRVVGRVARKTIFKTRPKPLIKKLG 123          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A485LBF8_9STRA (Aste57867_18404 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBF8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.680e-9
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLI 243
            G PTL+IGNH LEGK     KP+ ++RK   + A  D D            +EE      Y VVG  +KK +F TRPKP++
Sbjct:   43 GVPTLLIGNHLLEGKTVKLGKPMAIMRKRSKTSAPRDGD------------VEESKSDEAYTVVGIARKKLVFGTRPKPVL 111          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A2R5LBV0_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LBV0_9ACAR)

HSP 1 Score: 56.6 bits (135), Expect = 2.170e-8
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLI 243
            G P L++G+H L GK+    KP+LV++KV  S   +D D              E+   VEY V   +KKK +F+TRPKP+I
Sbjct:   42 GVPILLVGHHVLYGKEQAMDKPVLVMKKVVQSEVVSDSD--------------EKT-YVEYQVQAVIKKKLVFRTRPKPII 107          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: F5A6C0_PROCL (Ctf8 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=F5A6C0_PROCL)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-7
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAG--TVEYHVVGRVKKKTIFKTRPKPLI 243
            G P L+IG+H L GK     KPL V+RK  V   S D D       GL D L++R    +VEY +   VKKK +FKTRPKP+I
Sbjct:   47 GIPVLIIGHHILYGKVQDLDKPLAVMRKTRVDE-SMDVD-------GLQD-LQDRHAHQSVEYSIKAIVKKKLLFKTRPKPII 120          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A6J1Q553_9HYME (chromosome transmission fidelity protein 8 homolog n=2 Tax=Temnothorax TaxID=300110 RepID=A0A6J1Q553_9HYME)

HSP 1 Score: 53.5 bits (127), Expect = 3.730e-7
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLE-ERAGTVEYHVVGRVKKKTIFKTRPKPLI 243
            G P L+IG H L GK+ T  KPL+VL      R  N RD          + +E E A   EY V   VKKK +FK+RPKP++
Sbjct:   45 GVPILIIGIHVLHGKEITLDKPLIVLE-----RHRNTRD----------EAIEGEAAAKTEYFVKAIVKKKLLFKSRPKPIV 111          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: UPI000623B7D8 (chromosome transmission fidelity protein 8 homolog n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI000623B7D8)

HSP 1 Score: 53.5 bits (127), Expect = 3.960e-7
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTV--EYHVVGRVKKKTIFKTRPKPLI 243
            G P L+IG H L GK+ T  KPL+VL K   +                GD + E   TV  EY V   VKKK +FK+RPKP++
Sbjct:   47 GVPILIIGIHVLHGKEVTLEKPLIVLEKQHSN---------------TGDEIMEEESTVKTEYIVKAIVKKKLMFKSRPKPIV 114          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A3B4BJP1_9GOBI (CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) n=5 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4BJP1_9GOBI)

HSP 1 Score: 53.5 bits (127), Expect = 4.370e-7
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLI 243
            G P L++G+H L GK     KP  VL    +    + RD  D TS  +   L+  + T  Y V   +KKK IFKTRPKP+I
Sbjct:   44 GVPVLIVGHHILYGKHVKLEKPFAVL----IKHPGHSRDMCDDTSEAMETELQAPSFTT-YSVTALIKKKLIFKTRPKPII 119          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: UPI001CB9C1B9 (putative uncharacterized protein DDB_G0287975 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9C1B9)

HSP 1 Score: 53.9 bits (128), Expect = 5.040e-7
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   10 TLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLIRK 249
            T  +G H+L G      KPLLVL+K  +  +  + D  DG      D     +  VE  V+G ++++ +FKTRPK LI K
Sbjct:   54 TFTVGYHELTGSKIPLKKPLLVLKKKKIGYSDMEIDHNDGNDDDGEDEGVSSSSRVELEVIGIIRQRILFKTRPKALISK 133          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A6N2NJD2_SALVM (Post-SET domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2NJD2_SALVM)

HSP 1 Score: 53.1 bits (126), Expect = 5.160e-7
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   10 TLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLIRKL 252
            T  +G H+L G   T  KPLLVL+KV   +   D D+ D   G L       +  +E  V+G ++ K +FKTRP+ LI KL
Sbjct:   29 TFTVGYHELTGSKVTLKKPLLVLKKV---KGFMDVDQSDDNKGDL------PSSKIELDVIGIIRHKILFKTRPRALISKL 100          
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Match: A0A6I9X0N5_9HYME (chromosome transmission fidelity protein 8 homolog n=1 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9X0N5_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 5.260e-7
Identity = 34/81 (41.98%), Postives = 42/81 (51.85%), Query Frame = 1
Query:    1 GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGDGLEERAGTVEYHVVGRVKKKTIFKTRPKPLI 243
            G P L+IG H L GK+ T  KPL+VL K       N  D+  G         EE     EY V   VKKK +FK+RPKP++
Sbjct:   45 GVPILIIGIHVLHGKEITLEKPLIVLEKHH-----NTDDKATG---------EEATVKTEYLVKAIVKKKLLFKSRPKPIV 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87434.16278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K4_ECTSI8.760e-1852.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485LBF8_9STRA4.680e-940.74Aste57867_18404 protein n=1 Tax=Aphanomyces stella... [more]
A0A2R5LBV0_9ACAR2.170e-839.51Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
F5A6C0_PROCL1.080e-746.99Ctf8 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=... [more]
A0A6J1Q553_9HYME3.730e-742.68chromosome transmission fidelity protein 8 homolog... [more]
UPI000623B7D83.960e-740.96chromosome transmission fidelity protein 8 homolog... [more]
A0A3B4BJP1_9GOBI4.370e-740.74CTF8, chromosome transmission fidelity factor 8 ho... [more]
UPI001CB9C1B95.040e-736.25putative uncharacterized protein DDB_G0287975 n=1 ... [more]
A0A6N2NJD2_SALVM5.160e-739.51Post-SET domain-containing protein n=1 Tax=Salix v... [more]
A0A6I9X0N5_9HYME5.260e-741.98chromosome transmission fidelity protein 8 homolog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87434contigH-elongata_contig87434:306..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionChromosome transmission fidelity protein 8
Ec32 orthologEc-11_002560.1
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931274.714538-CDS-H-elongata_contig87434:305..5631622931274.714538-CDS-H-elongata_contig87434:305..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87434 306..563 -
1691679769.1722517-CDS-H-elongata_contig87434:305..5631691679769.1722517-CDS-H-elongata_contig87434:305..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87434 306..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87434.16278.1prot_H-elongata_contig87434.16278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87434 306..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87434.16278.1

>prot_H-elongata_contig87434.16278.1 ID=prot_H-elongata_contig87434.16278.1|Name=mRNA_H-elongata_contig87434.16278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
GKPTLVIGNHKLEGKDATEPKPLLVLRKVFVSRASNDRDRGDGTSGGLGD
GLEERAGTVEYHVVGRVKKKTIFKTRPKPLIRKLG*
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mRNA from alignment at H-elongata_contig87434:306..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87434.16278.1 ID=mRNA_H-elongata_contig87434.16278.1|Name=mRNA_H-elongata_contig87434.16278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig87434:306..563- (Himanthalia elongata Himel1 dioecious)
GGGAAGCCGACGCTCGTGATTGGCAACCACAAGTTGGAGGGCAAGGATGC GACCGAACCCAAGCCGCTTCTCGTCTTGAGGAAGGTCTTTGTTTCCCGTG CATCTAACGATCGAGATCGAGGAGACGGGACAAGCGGTGGATTGGGCGAT GGTTTGGAGGAAAGGGCGGGGACCGTGGAATACCATGTCGTGGGGAGAGT AAAGAAAAAGACAATATTCAAGACCCGGCCGAAGCCTTTGATCCGCAAAC TAGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig87434:306..563-

>mRNA_H-elongata_contig87434.16278.1 ID=mRNA_H-elongata_contig87434.16278.1|Name=mRNA_H-elongata_contig87434.16278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig87434:306..563- (Himanthalia elongata Himel1 dioecious)
GGGAAGCCGACGCTCGTGATTGGCAACCACAAGTTGGAGGGCAAGGATGC
GACCGAACCCAAGCCGCTTCTCGTCTTGAGGAAGGTCTTTGTTTCCCGTG
CATCTAACGATCGAGATCGAGGAGACGGGACAAGCGGTGGATTGGGCGAT
GGTTTGGAGGAAAGGGCGGGGACCGTGGAATACCATGTCGTGGGGAGAGT
AAAGAAAAAGACAATATTCAAGACCCGGCCGAAGCCTTTGATCCGCAAAC
TAGGATAGGGGAAGCCGACGCTCGTGATTGGCAACCACAAGTTGGAGGGC
AAGGATGCGACCGAACCCAAGCCGCTTCTCGTCTTGAGGAAGGTCTTTGT
TTCCCGTGCATCTAACGATCGAGATCGAGGAGACGGGACAAGCGGTGGAT
TGGGCGATGGTTTGGAGGAAAGGGCGGGGACCGTGGAATACCATGTCGTG
GGGAGAGTAAAGAAAAAGACAATATTCAAGACCCGGCCGAAGCCTTTGAT
CCGCAAACTAGGATAG
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