mRNA_H-elongata_contig87344.16274.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87344.16274.1
Unique NamemRNA_H-elongata_contig87344.16274.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A482RQP2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQP2_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 1.260e-8
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            VYCD PLL+A+Q+A+IFPDSKTFVDMPMK
Sbjct:   36 VYCDGPLLQAIQLARIFPDSKTFVDMPMK 64
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A6H5JSC8_9PHAE (Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.020e-8
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMKR 90
            VYCD PLL AVQ A+IFPDSKTFVDMPMK+
Sbjct:   77 VYCDGPLLEAVQSARIFPDSKTFVDMPMKK 106
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: D7FLX4_ECTSI (Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMKR 90
            VYCD PLL AVQ A++FPDSKTFVDMPMK+
Sbjct:   86 VYCDGPLLEAVQSARLFPDSKTFVDMPMKK 115
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A6J8E2P6_MYTCO (Trehalase n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8E2P6_MYTCO)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            +YCD PLL AVQMAKIFPD KTFVDM MK
Sbjct:   23 IYCDGPLLHAVQMAKIFPDGKTFVDMSMK 51
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A8B6E6R8_MYTGA (Trehalase n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6E6R8_MYTGA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            +YCD PLL A+QMAKIFPD KTFVDM MK
Sbjct:   25 IYCDGPLLHAIQMAKIFPDGKTFVDMSMK 53
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A1X2IWQ1_9FUNG (Trehalase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IWQ1_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-7
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMKR 90
            +YC+ PLL+ VQ+AK+FPDSKTFVDMP K+
Sbjct:   38 IYCEGPLLKTVQLAKLFPDSKTFVDMPTKK 67
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A8H7S3J0_9FUNG (Trehalase n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S3J0_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 6.930e-7
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            +YC+ PLLR VQ+A++FPDSKTFVDMP K
Sbjct:   36 IYCEGPLLRTVQLARLFPDSKTFVDMPTK 64
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A068RF92_9FUNG (Trehalase n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RF92_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMP 81
            +YCD PLLRAVQ+A++F DSKTFVDMP
Sbjct:   34 IYCDGPLLRAVQLARLFKDSKTFVDMP 60
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: A0A1X2GG74_9FUNG (Trehalase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GG74_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 20/29 (68.97%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            +YCD PLL+ VQ+A+++PDSKTFVDMP K
Sbjct:   37 IYCDGPLLKTVQLAQLYPDSKTFVDMPTK 65
[Close]
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Match: UPI001C20B535 (uncharacterized protein LOC121732739 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C20B535)

HSP 1 Score: 51.2 bits (121), Expect = 2.420e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VYCDSPLLRAVQMAKIFPDSKTFVDMPMK 87
            VYCDS LL  VQMA+IFPDSKTFVDM MK
Sbjct:   26 VYCDSKLLHHVQMARIFPDSKTFVDMRMK 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87344.16274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RQP2_9ARCH1.260e-882.76Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6H5JSC8_9PHAE3.020e-883.33Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FLX4_ECTSI5.680e-880.00Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculos... [more]
A0A6J8E2P6_MYTCO1.450e-782.76Trehalase n=1 Tax=Mytilus coruscus TaxID=42192 Rep... [more]
A0A8B6E6R8_MYTGA1.980e-779.31Trehalase n=2 Tax=Mytilus galloprovincialis TaxID=... [more]
A0A1X2IWQ1_9FUNG5.070e-770.00Trehalase n=1 Tax=Absidia repens TaxID=90262 RepID... [more]
A0A8H7S3J0_9FUNG6.930e-772.41Trehalase n=1 Tax=Mucor circinatus TaxID=2054153 R... [more]
A0A068RF92_9FUNG1.770e-677.78Trehalase n=2 Tax=Lichtheimia TaxID=688353 RepID=A... [more]
A0A1X2GG74_9FUNG1.770e-668.97Trehalase n=1 Tax=Hesseltinella vesiculosa TaxID=1... [more]
UPI001C20B5352.420e-682.76uncharacterized protein LOC121732739 n=1 Tax=Arici... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87344contigH-elongata_contig87344:95..211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931274.2433233-CDS-H-elongata_contig87344:94..2111622931274.2433233-CDS-H-elongata_contig87344:94..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87344 95..211 -
1691679769.0165288-CDS-H-elongata_contig87344:94..2111691679769.0165288-CDS-H-elongata_contig87344:94..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87344 95..211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87344.16274.1prot_H-elongata_contig87344.16274.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87344 95..211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87344.16274.1

>prot_H-elongata_contig87344.16274.1 ID=prot_H-elongata_contig87344.16274.1|Name=mRNA_H-elongata_contig87344.16274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
VYCDSPLLRAVQMAKIFPDSKTFVDMPMKRVRKRHKAN*
back to top

mRNA from alignment at H-elongata_contig87344:95..211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87344.16274.1 ID=mRNA_H-elongata_contig87344.16274.1|Name=mRNA_H-elongata_contig87344.16274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig87344:95..211- (Himanthalia elongata Himel1 dioecious)
GTGTACTGCGACAGTCCCTTGCTTAGGGCTGTGCAGATGGCGAAGATATT
TCCAGACAGCAAAACCTTTGTGGATATGCCCATGAAACGGGTGAGGAAGC
GACATAAGGCAAATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig87344:95..211-

>mRNA_H-elongata_contig87344.16274.1 ID=mRNA_H-elongata_contig87344.16274.1|Name=mRNA_H-elongata_contig87344.16274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig87344:95..211- (Himanthalia elongata Himel1 dioecious)
GTGTACTGCGACAGTCCCTTGCTTAGGGCTGTGCAGATGGCGAAGATATT
TCCAGACAGCAAAACCTTTGTGGATATGCCCATGAAACGGGTGAGGAAGC
GACATAAGGCAAATTGAGTGTACTGCGACAGTCCCTTGCTTAGGGCTGTG
CAGATGGCGAAGATATTTCCAGACAGCAAAACCTTTGTGGATATGCCCAT
GAAACGGGTGAGGAAGCGACATAAGGCAAATTGA
back to top