mRNA_H-elongata_contig87203.16266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87203.16266.1
Unique NamemRNA_H-elongata_contig87203.16266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87203.16266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87203contigH-elongata_contig87203:1752..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.9983149-CDS-H-elongata_contig87203:1751..22521622931272.9983149-CDS-H-elongata_contig87203:1751..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87203 1752..2252 +
1691679768.5787818-CDS-H-elongata_contig87203:1751..22521691679768.5787818-CDS-H-elongata_contig87203:1751..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87203 1752..2252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87203.16266.1prot_H-elongata_contig87203.16266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87203 1752..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87203.16266.1

>prot_H-elongata_contig87203.16266.1 ID=prot_H-elongata_contig87203.16266.1|Name=mRNA_H-elongata_contig87203.16266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
LYYSSKQGPLRSVDLGAEELLGSSSASSAKPQTQRASPPLSEMVKTYSRT
YNRRAWQPSSARRNDDGKKADTSTASTPADVASLLQSPAVAKIPPSAVAT
TSPVTRAEAAASVETNAVATTVKEPVALEATPEQLSSGDGATADVESMLK
RANEYFMPFQRNVQDNI
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mRNA from alignment at H-elongata_contig87203:1752..2253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87203.16266.1 ID=mRNA_H-elongata_contig87203.16266.1|Name=mRNA_H-elongata_contig87203.16266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at H-elongata_contig87203:1752..2253+ (Himanthalia elongata Himel1 dioecious)
CTTTACTATTCTTCTAAGCAGGGGCCTTTGAGGAGTGTGGATCTTGGTGC
CGAAGAGTTGTTGGGGTCTTCTAGCGCTAGTTCCGCGAAGCCCCAAACTC
AACGTGCATCACCACCTTTGTCCGAGATGGTGAAAACATACTCTAGAACG
TACAACAGGCGCGCGTGGCAACCATCCTCCGCGAGGAGAAATGATGACGG
GAAAAAGGCCGACACCTCCACCGCCTCCACGCCTGCCGATGTGGCTTCTT
TACTCCAGTCTCCCGCTGTAGCAAAAATCCCGCCCTCTGCCGTAGCCACA
ACATCCCCCGTCACCCGCGCGGAAGCTGCTGCATCGGTTGAGACTAATGC
TGTGGCTACAACAGTGAAGGAGCCCGTAGCACTCGAGGCAACGCCCGAGC
AGCTCAGCAGCGGAGACGGGGCGACAGCTGATGTCGAATCGATGCTGAAG
CGCGCGAATGAGTATTTTATGCCCTTCCAGCGGAACGTCCAAGACAACAT
AG
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Coding sequence (CDS) from alignment at H-elongata_contig87203:1752..2253+

>mRNA_H-elongata_contig87203.16266.1 ID=mRNA_H-elongata_contig87203.16266.1|Name=mRNA_H-elongata_contig87203.16266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig87203:1752..2253+ (Himanthalia elongata Himel1 dioecious)
CTTTACTATTCTTCTAAGCAGGGGCCTTTGAGGAGTGTGGATCTTGGTGC
CGAAGAGTTGTTGGGGTCTTCTAGCGCTAGTTCCGCGAAGCCCCAAACTC
AACGTGCATCACCACCTTTGTCCGAGATGGTGAAAACATACTCTAGAACG
TACAACAGGCGCGCGTGGCAACCATCCTCCGCGAGGAGAAATGATGACGG
GAAAAAGGCCGACACCTCCACCGCCTCCACGCCTGCCGATGTGGCTTCTT
TACTCCAGTCTCCCGCTGTAGCAAAAATCCCGCCCTCTGCCGTAGCCACA
ACATCCCCCGTCACCCGCGCGGAAGCTGCTGCATCGGTTGAGACTAATGC
TGTGGCTACAACAGTGAAGGAGCCCGTAGCACTCGAGGCAACGCCCGAGC
AGCTCAGCAGCGGAGACGGGGCGACAGCTGATGTCGAATCGATGCTGAAG
CGCGCGAATGAGTATTTTATGCCCTTCCAGCGGAACGTCCAAGACAACAT
ACTTTACTATTCTTCTAAGCAGGGGCCTTTGAGGAGTGTGGATCTTGGTG
CCGAAGAGTTGTTGGGGTCTTCTAGCGCTAGTTCCGCGAAGCCCCAAACT
CAACGTGCATCACCACCTTTGTCCGAGATGGTGAAAACATACTCTAGAAC
GTACAACAGGCGCGCGTGGCAACCATCCTCCGCGAGGAGAAATGATGACG
GGAAAAAGGCCGACACCTCCACCGCCTCCACGCCTGCCGATGTGGCTTCT
TTACTCCAGTCTCCCGCTGTAGCAAAAATCCCGCCCTCTGCCGTAGCCAC
AACATCCCCCGTCACCCGCGCGGAAGCTGCTGCATCGGTTGAGACTAATG
CTGTGGCTACAACAGTGAAGGAGCCCGTAGCACTCGAGGCAACGCCCGAG
CAGCTCAGCAGCGGAGACGGGGCGACAGCTGATGTCGAATCGATGCTGAA
GCGCGCGAATGAGTATTTTATGCCCTTCCAGCGGAACGTCCAAGACAACA
TA
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