mRNA_H-elongata_contig87189.16265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87189.16265.1
Unique NamemRNA_H-elongata_contig87189.16265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.100e-48
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:   16 QLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQV 324
            QL+ ID G NAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNA FGQDDLKGVA+RLEAM  SMDVLKDMPEAEDRA TL++LQERLETLLKPKLL++
Sbjct:  120 QLESIDHGANAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNASFGQDDLKGVAQRLEAMAGSMDVLKDMPEAEDRAATLRDLQERLETLLKPKLLEI 222
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A8J1Y7R4_OWEFU (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y7R4_OWEFU)

HSP 1 Score: 70.9 bits (172), Expect = 6.050e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLL 318
            +  +++++  T   +ETL +LD VK+ M D  H L EA +W  L   V   F   D+  ++++L  M +S+ +L D+P+ EDR   L+ L+ RLE +L P+L+
Sbjct:   89 KEDIEKVEHDTAQSMETLMKLDQVKSRMKDTSHALQEADNWTTLSANVEEVFQSQDISAISQKLVGMQQSLQMLVDVPDYEDRCNHLESLKNRLEAMLSPQLV 191
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A7M5TZH8_9CNID (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5TZH8_9CNID)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-10
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   25 EIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQV 324
            +++  T + ++ L  +D VK  M D  + L EA  W  L  E +  F + DL  VAE+L  M KS++VLKD+P+  +R   L+  + +LE LL P L+Q+
Sbjct:   94 KVEENTASSMKKLVEIDGVKCRMQDACNALQEADKWTILSSEADESFERGDLNQVAEKLIGMQKSLEVLKDVPDYNERLKVLQNHKNKLEALLSPTLVQI 193
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: UPI0006262318 (conserved oligomeric Golgi complex subunit 7 isoform X1 n=3 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006262318)

HSP 1 Score: 63.2 bits (152), Expect = 3.040e-9
Identity = 35/111 (31.53%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQVGRNKNV 342
            ++++ E++  T + +  L R+D +KT++     +L EA +W AL  EV   F   D++ +A +L +M KS+ +L +  + ED+   L+ L+ RLE L+ P+L+Q     N+
Sbjct:  126 KQEIAEVEKETGSSMAALERIDRIKTDLQAAKQSLHEADNWTALANEVEEVFESGDVEKIASKLYSMQKSLSMLVNAIDYEDKKLQLEGLKNRLEALVSPQLVQAFTAANI 236
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: UPI000EAB1940 (conserved oligomeric Golgi complex subunit 7-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1940)

HSP 1 Score: 62.4 bits (150), Expect = 5.490e-9
Identity = 32/104 (30.77%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQ 321
            + ++++++  T + + TL R+D +KT++ +    L EA +W+ L  +V   F   D+  +A +L +M KS+ +L ++ + ED+   L+ L+ RLE +  PKL+Q
Sbjct:   88 KHEIEKVEKDTASSMATLERIDRIKTDLQNAKQGLHEADNWSVLANDVEEVFESGDIVAIANKLFSMQKSLSMLVNVVDYEDKKLQLEGLKNRLEAMASPKLVQ 191
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: K1PJJ5_CRAGI (Conserved oligomeric Golgi complex subunit 7 n=4 Tax=Crassostrea TaxID=6564 RepID=K1PJJ5_CRAGI)

HSP 1 Score: 62.0 bits (149), Expect = 7.720e-9
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQ 321
            ++ + +++  T   ++TL +LD +K+ M      L EA +W  L  +V   F   D+K +  +L+ M  S+ +L D P+  DR   L+ L+ RLE +L P+L+Q
Sbjct:  109 KQDIQKVEHDTAKSMQTLLKLDAIKSRMTSAAEALREADNWTTLSSDVEEVFQSQDIKAITLKLKGMQNSLLMLVDTPDYADRCQHLETLKNRLEAVLSPQLVQ 212
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A0L7RHT1_9HYME (Conserved oligomeric Golgi complex subunit 7 (Fragment) n=2 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7RHT1_9HYME)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-8
Identity = 32/104 (30.77%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQ 321
            + ++++++  T + + TL R+D +KT++      L EA +W+ L  +V   F   D++ +A +L +M KS+ +L ++ + ED+   L+ L+ RLE +  PKL+Q
Sbjct:   89 KHEIEKVEKDTASSMATLERMDRIKTDLQTAKEGLHEADNWSVLANDVEEVFESGDIEAIANKLFSMQKSLAMLVNVIDYEDKKLQLEGLKNRLEAMASPKLVQ 192
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A7M7H0V6_NASVI (Conserved oligomeric Golgi complex subunit 7 n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7H0V6_NASVI)

HSP 1 Score: 61.6 bits (148), Expect = 1.050e-8
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQ 321
            +++L+ ++ GT + ++ L +LD +KT   +      E+ +W A   E+   F   D++ +A+ L  M KS+ VL + P+ ED+   L+ L+ RLE L  PKL+Q
Sbjct:  101 KKELENVEKGTTSSIQMLEKLDKIKTEYINKTEGQRESDNWAAATNEIEDIFESGDVEKIADTLCGMQKSLSVLINTPDYEDKKLQLEGLKNRLEALTSPKLVQ 204
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A834IYF2_VESVU (Conserved oligomeric Golgi complex subunit 7 n=15 Tax=Vespidae TaxID=7438 RepID=A0A834IYF2_VESVU)

HSP 1 Score: 61.6 bits (148), Expect = 1.050e-8
Identity = 35/111 (31.53%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQVGRNKNV 342
            ++++ +++  T + +E+L RLD +KT +      L EA +W+AL  +V   F   D++ +A +L +M KS+ +L ++ + ED+   L+ L+ RLE +  PKL+Q     N+
Sbjct:   88 KQEIAKVEECTVSSIESLERLDRIKTQLETAKRGLHEADNWSALANDVEEVFESGDIEVIASKLFSMQKSLAMLINVVDYEDKKLQLEGLKNRLEAMASPKLVQAFNTGNL 198
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BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Match: A0A154P744_DUFNO (Conserved oligomeric Golgi complex subunit 7 (Fragment) n=6 Tax=Halictidae TaxID=77572 RepID=A0A154P744_DUFNO)

HSP 1 Score: 61.2 bits (147), Expect = 1.430e-8
Identity = 31/104 (29.81%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:   10 RRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVREVNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETLLKPKLLQ 321
            ++++++++  T + + TL R+D +KT++ +    L EA +W+ L  +V   F   D++ +A +L +M KS+ +L ++ + ED+   L+ L+ RLE +  P+L+Q
Sbjct:   96 KQEIEKVEKDTASSMTTLERIDRIKTDLQNAKQGLHEADNWSVLATDVEEVFESGDVEAIANKLFSMQKSLAMLVNVVDYEDKKLQLEGLKNRLEAIASPRLVQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87189.16265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUF5_ECTSI1.100e-4887.38Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
A0A8J1Y7R4_OWEFU6.050e-1234.95Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
A0A7M5TZH8_9CNID2.390e-1037.00Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
UPI00062623183.040e-931.53conserved oligomeric Golgi complex subunit 7 isofo... [more]
UPI000EAB19405.490e-930.77conserved oligomeric Golgi complex subunit 7-like ... [more]
K1PJJ5_CRAGI7.720e-931.73Conserved oligomeric Golgi complex subunit 7 n=4 T... [more]
A0A0L7RHT1_9HYME1.040e-830.77Conserved oligomeric Golgi complex subunit 7 (Frag... [more]
A0A7M7H0V6_NASVI1.050e-832.69Conserved oligomeric Golgi complex subunit 7 n=3 T... [more]
A0A834IYF2_VESVU1.050e-831.53Conserved oligomeric Golgi complex subunit 7 n=15 ... [more]
A0A154P744_DUFNO1.430e-829.81Conserved oligomeric Golgi complex subunit 7 (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87189contigH-elongata_contig87189:237..957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.8e-42
Seed eggNOG ortholog2880.D7FUF5
Preferred nameCOG7
KEGG koko:K10878,ko:K17586,ko:K20294
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0000916,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032504,GO:0032506,GO:0032588,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036063,GO:0036211,GO:0036213,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048609,GO:0050821,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG4182@1,KOG4182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.932573-CDS-H-elongata_contig87189:236..4171622931272.932573-CDS-H-elongata_contig87189:236..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87189 237..417 -
1691679768.5545676-CDS-H-elongata_contig87189:236..4171691679768.5545676-CDS-H-elongata_contig87189:236..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87189 237..417 -
1622931272.9492872-CDS-H-elongata_contig87189:796..9571622931272.9492872-CDS-H-elongata_contig87189:796..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87189 797..957 -
1691679768.567859-CDS-H-elongata_contig87189:796..9571691679768.567859-CDS-H-elongata_contig87189:796..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87189 797..957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87189.16265.1prot_H-elongata_contig87189.16265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87189 237..957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87189.16265.1

>prot_H-elongata_contig87189.16265.1 ID=prot_H-elongata_contig87189.16265.1|Name=mRNA_H-elongata_contig87189.16265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MLSRRQLDEIDLGTNAHVETLARLDLVKTNMGDCLHTLTEAASWNALVRE
VNAKFGQDDLKGVAERLEAMVKSMDVLKDMPEAEDRATTLKELQERLETL
LKPKLLQVGRNKNV
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mRNA from alignment at H-elongata_contig87189:237..957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87189.16265.1 ID=mRNA_H-elongata_contig87189.16265.1|Name=mRNA_H-elongata_contig87189.16265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=721bp|location=Sequence derived from alignment at H-elongata_contig87189:237..957- (Himanthalia elongata Himel1 dioecious)
ATGTTGTCACGGCGGCAGCTGGACGAGATCGACCTCGGGACGAACGCGCA
CGTGGAAACCCTGGCTCGGCTTGACCTCGTCAAAACCAACATGGGAGATT
GCCTGCACACCCTCACGGAGGCCGCCTCCTGGAACGCCCTCGTCCGTGAA
GTTAACGCCAAGTACGAACCGTTACATCATGTACAGTCTCTGGTGTAAAT
CATCTCCAGTAAGTAGTGCCGCGGTGGAAACATGCCCCAGGGAGTTCCTC
GGGGTGTCCGGTCGAGTATGACCATGGATGCCTGTTTTCAAGGGAGCATG
TTAGTTATGACTGACCATTAATTAAATATACTGAGTATTTGCTAAAATAT
TATCCGCATGAAGCCTGCTTTTCCTGATCCTGGAGCGATAGGAAAATAAA
TCATCTCCACCCCATCCTCACCAGTTTCCTGTGCCCTGCTGAGTTTATAT
TCTTTCTTTCGACTCTTGATGATTCCCATTGCGGCTCGCTCTGGTCTCTT
TCTTAAACCTTTCCCGGATCGTGGAACGTTCCTCGGAAAGGTTCGGGCAA
GACGACTTGAAGGGCGTCGCGGAAAGGCTGGAAGCGATGGTGAAGAGCAT
GGATGTCCTCAAGGACATGCCTGAGGCAGAAGACCGCGCCACCACCCTCA
AGGAGCTCCAGGAGAGGCTGGAGACGTTGTTGAAACCCAAGCTACTTCAG
GTTGGGAGGAATAAGAACGTC
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Coding sequence (CDS) from alignment at H-elongata_contig87189:237..957-

>mRNA_H-elongata_contig87189.16265.1 ID=mRNA_H-elongata_contig87189.16265.1|Name=mRNA_H-elongata_contig87189.16265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig87189:237..957- (Himanthalia elongata Himel1 dioecious)
ATGTTGTCACGGCGGCAGCTGGACGAGATCGACCTCGGGACGAACGCGCA
CGTGGAAACCCTGGCTCGGCTTGACCTCGTCAAAACCAACATGGGAGATT
GCCTGCACACCCTCACGGAGGCCGCCTCCTGGAACGCCCTCGTCCGTGAA
GTTAACGCCAAATGTTGTCACGGCGGCAGCTGGACGAGATCGACCTCGGG
ACGAACGCGCACGTGGAAACCCTGGCTCGGCTTGACCTCGTCAAAACCAA
CATGGGAGATTGCCTGCACACCCTCACGGAGGCCGCCTCCTGGAACGCCC
TCGTCCGTGAAGTTAACGCCAAGTTCGGGCAAGACGACTTGAAGGGCGTC
GCGGAAAGGCTGGAAGCGATGGTGAAGAGCATGGATGTCCTCAAGGACAT
GCCTGAGGCAGAAGACCGCGCCACCACCCTCAAGGAGCTCCAGGAGAGGC
TGGAGACGTTGTTGAAACCCAAGCTACTTCAGGTTGGGAGGAATAAGAAC
GTCGTTCGGGCAAGACGACTTGAAGGGCGTCGCGGAAAGGCTGGAAGCGA
TGGTGAAGAGCATGGATGTCCTCAAGGACATGCCTGAGGCAGAAGACCGC
GCCACCACCCTCAAGGAGCTCCAGGAGAGGCTGGAGACGTTGTTGAAACC
CAAGCTACTTCAGGTTGGGAGGAATAAGAACGTC
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