mRNA_H-elongata_contig87135.16261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87135.16261.1
Unique NamemRNA_H-elongata_contig87135.16261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87135.16261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87135contigH-elongata_contig87135:799..1348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87135.16261.1prot_H-elongata_contig87135.16261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87135 908..1225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.3548677-UTR-H-elongata_contig87135:798..9071622931272.3548677-UTR-H-elongata_contig87135:798..907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87135 799..907 +
1691679768.252773-UTR-H-elongata_contig87135:798..9071691679768.252773-UTR-H-elongata_contig87135:798..907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87135 799..907 +
1622931272.3949614-UTR-H-elongata_contig87135:1225..13481622931272.3949614-UTR-H-elongata_contig87135:1225..1348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87135 1226..1348 +
1691679768.280329-UTR-H-elongata_contig87135:1225..13481691679768.280329-UTR-H-elongata_contig87135:1225..1348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87135 1226..1348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.373427-CDS-H-elongata_contig87135:907..12251622931272.373427-CDS-H-elongata_contig87135:907..1225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87135 908..1225 +
1691679768.2712455-CDS-H-elongata_contig87135:907..12251691679768.2712455-CDS-H-elongata_contig87135:907..1225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87135 908..1225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87135.16261.1

>prot_H-elongata_contig87135.16261.1 ID=prot_H-elongata_contig87135.16261.1|Name=mRNA_H-elongata_contig87135.16261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MRHIHPPLCRNDSDSVMRFSRPGTPNVARDLILMRFWHEKPRPLSIEEFD
NVGGRQKQRRELFHELRRNSKHFSAEVPRRTHFFLRSPEAPTTYLPQIYA
NRGTD*
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mRNA from alignment at H-elongata_contig87135:799..1348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87135.16261.1 ID=mRNA_H-elongata_contig87135.16261.1|Name=mRNA_H-elongata_contig87135.16261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig87135:799..1348+ (Himanthalia elongata Himel1 dioecious)
CCGTGGCCTCTTTGTCGCCCGCCGTTGATTTTGATGCGATATACAGCGCC
TTTCCCCTTGGAGACCCGGGACAGCCAACTGTCGGCCGCCTTCTTCTAAA
GAGCCGTCGATGAGACATATCCACCCCCCGTTGTGTCGAAACGACAGCGA
CAGCGTCATGAGGTTCTCAAGGCCGGGAACGCCCAACGTGGCGCGCGATT
TGATCTTGATGCGGTTCTGGCACGAGAAGCCACGCCCACTCTCGATCGAG
GAGTTTGACAATGTCGGGGGTAGGCAAAAACAACGTCGAGAGCTTTTCCA
CGAATTGAGGCGAAACTCAAAACATTTTTCGGCGGAAGTGCCGAGACGGA
CACATTTTTTTTTACGCAGCCCTGAAGCCCCGACCACTTATTTACCCCAG
ATTTATGCCAACCGGGGGACTGATTAGGGCATAGACGGCCTAAGAGAAGC
TCAGACAAGGCTGGACACAACCACTGAGAAGTTGGCGCATTGGCCTGAAA
ATTGATGGGCACCAGGGAATTACCCCAAGGAATGCTCGGTTCGAAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig87135:799..1348+

>mRNA_H-elongata_contig87135.16261.1 ID=mRNA_H-elongata_contig87135.16261.1|Name=mRNA_H-elongata_contig87135.16261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig87135:799..1348+ (Himanthalia elongata Himel1 dioecious)
ATGAGACATATCCACCCCCCGTTGTGTCGAAACGACAGCGACAGCGTCAT
GAGGTTCTCAAGGCCGGGAACGCCCAACGTGGCGCGCGATTTGATCTTGA
TGCGGTTCTGGCACGAGAAGCCACGCCCACTCTCGATCGAGGAGTTTGAC
AATGTCGGGGGTAGGCAAAAACAACGTCGAGAGCTTTTCCACGAATTGAG
GCGAAACTCAAAACATTTTTCGGCGGAAGTGCCGAGACGGACACATTTTT
TTTTACGCAGCCCTGAAGCCCCGACCACTTATTTACCCCAGATTTATGCC
AACCGGGGGACTGATTAGATGAGACATATCCACCCCCCGTTGTGTCGAAA
CGACAGCGACAGCGTCATGAGGTTCTCAAGGCCGGGAACGCCCAACGTGG
CGCGCGATTTGATCTTGATGCGGTTCTGGCACGAGAAGCCACGCCCACTC
TCGATCGAGGAGTTTGACAATGTCGGGGGTAGGCAAAAACAACGTCGAGA
GCTTTTCCACGAATTGAGGCGAAACTCAAAACATTTTTCGGCGGAAGTGC
CGAGACGGACACATTTTTTTTTACGCAGCCCTGAAGCCCCGACCACTTAT
TTACCCCAGATTTATGCCAACCGGGGGACTGATTAG
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