mRNA_H-elongata_contig87132.16260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87132.16260.1
Unique NamemRNA_H-elongata_contig87132.16260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: D8LS39_ECTSI (Utp12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS39_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 9.000e-126
Identity = 224/299 (74.92%), Postives = 251/299 (83.95%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVA--GAAGFAPPS---KPVGEVEGDEGVEAANGGA--QAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMMESEEDRLVKKMRQ 876
            +AW LEVS DGSFVLSGGHDRSLR+WRRT+EMVFLEEEREKE+EGLFE+ELDRDDVA  GA G A P+   KP G  EG +G   A+GG   QAESGPATKRS+ESVKAGERLMDALELA  E KLMR +E+AAA+A+++GEPAP  RRPNP+LLNL PLRY+LRTLQ             MIKTPELEQALLVLPFSQVE+LA FLVRLLAAGLEVELCARCA+FLLRVHQARIVS+GSMV VLDALR NLRRQLEASRD VG NMAGLR+LGR+ E+++ AY+MESEEDRL K+MRQ
Sbjct:  755 EAWTLEVSPDGSFVLSGGHDRSLRLWRRTEEMVFLEEEREKEMEGLFESELDRDDVAAPGADGLALPAPQRKPEGTEEGGDGDGGASGGGAQQAESGPATKRSLESVKAGERLMDALELAELELKLMREEERAAAKARRRGEPAPPARRPNPILLNLSPLRYVLRTLQ-------------MIKTPELEQALLVLPFSQVESLANFLVRLLAAGLEVELCARCAVFLLRVHQARIVSTGSMVVVLDALRNNLRRQLEASRDVVGRNMAGLRILGRLAEEDKNAYLMESEEDRLAKRMRQ 1040          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A7S3XPK1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPK1_HETAK)

HSP 1 Score: 206 bits (524), Expect = 1.400e-61
Identity = 133/278 (47.84%), Postives = 169/278 (60.79%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYM 834
            + W+L VS DGSF++SG HDRSLR+W RTDE VFLEEEREKE+E +FE            G   P +     E  EG          ES  A+KR+IESV++GERLMDA+E+A  EE+ +   EK   +  +KG+P    R+PNP++L   PL YIL TLQ              I+  ELEQALLVL ++  E L  FL RLLA G EVEL AR AIFLLR HQA+I++  S+V  L ALR  LRR+LE  +D +G N+AGL  L R +E +   Y+
Sbjct:   33 EVWSLAVSNDGSFLISGSHDRSLRVWERTDEPVFLEEEREKEMEAMFEE-----------GLGQPDRDA--EENQEG----------ESALASKRTIESVRSGERLMDAIEIAVSEEEAIEEHEKKNKKLDKKGQPRLKDRQPNPLMLGKSPLAYILFTLQ-------------QIRPAELEQALLVLSYTFAEPLISFLQRLLARGAEVELAARAAIFLLRTHQAQIIAHHSLVGELTALRWALRRRLEGQKDLLGTNLAGLAYLRRKIEADSNTYL 274          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A7S3XPJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ0_HETAK)

HSP 1 Score: 201 bits (511), Expect = 1.990e-59
Identity = 130/266 (48.87%), Postives = 164/266 (61.65%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRML 798
            + W+L VS DGSF++SG HDRSLR+W RTDE VFLEEEREKE+E +FE            G   P +     E  EG          ES  A+KR+IESV++GERLMDA+E+A  EE+ +   EK   +  +KG+P    R+PNP++L   PL YIL TLQ              I+  ELEQALLVL ++  E L  FL RLLA G EVEL AR AIFLLR HQA+I++  S+V  L ALR  LRR+LE  +D +G N+AGL M+
Sbjct:   33 EVWSLAVSNDGSFLISGSHDRSLRVWERTDEPVFLEEEREKEMEAMFEE-----------GLGQPDRDA--EENQEG----------ESALASKRTIESVRSGERLMDAIEIAVSEEEAIEEHEKKNKKLDKKGQPRLKDRQPNPLMLGKSPLAYILFTLQ-------------QIRPAELEQALLVLSYTFAEPLISFLQRLLARGAEVELAARAAIFLLRTHQAQIIAHHSLVGELTALRWALRRRLEGQKDLLGTNLAGLVMI 262          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A5D6Y6H3_9STRA (Utp12 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6H3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.050e-45
Identity = 121/285 (42.46%), Postives = 166/285 (58.25%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDD----VAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELA-AQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMME 840
            + W L VSADGSFV+S   DRSL  + RT++ VFLEEEREKE+E LFE EL +        G  G A  S   GE E  EG     GGA A    A KR++ESVKAGE LM+A+ELA A+   +   +++AA +AK    PA   R PN +LL   PL+Y+L  L+              ++  E+E+AL+VLPF  VE L   L++L+++ LEVE C    ++LL++H   I +   +   L+ L   LRRQL   ++ +G N+AGLR L R V+ ERT ++ E
Sbjct:  677 EVWGLAVSADGSFVVSCSQDRSLVKYVRTEDQVFLEEEREKEMEQLFEDELSKSSRGAPALGGKGLATDSSKAGEGEDAEG-----GGASAS---AAKRTVESVKAGESLMEAVELADAELAAIAEYEKRAAKKAKDPKAPALAPRTPNILLLGYSPLKYVLNALRR-------------VRPHEMEEALIVLPFEHVEKLIGLLLQLISSHLEVEFCCNVLLYLLKLHHTAICNRKQLFNELELLWQRLRRQLVDKKNRIGFNLAGLRYLKRQVDDERTGFVQE 940          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A1V9ZSC5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSC5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.940e-43
Identity = 110/281 (39.15%), Postives = 170/281 (60.50%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMMES 843
            + WA+ V+ DGSFV+S   DRSL  + R+D+ VF+EEE+EKELE +FEA+L+  + A     AP             +  AN   +AES  A+K+++++VK+GERL++A++LA  + K   AD+             PG    N ++L   PL+++LR L+              I+  +LE+ALLVLPF  VE L KFL++L+AAGLEVELC    +FL++VH  +IV++ S++  LDAL  +LR  L A ++ +G N+AG++ + R V+  +TA+  E+
Sbjct:  651 EVWAIAVARDGSFVVSASQDRSLVKYARSDDQVFIEEEKEKELEAMFEADLNPTNTA-----APT------------LNGANAVVEAESATASKKTVQTVKSGERLIEAIDLAEHDRK---ADK-------------PGT---NILMLGYSPLKFVLRALRE-------------IRAQDLEEALLVLPFDYVEKLIKFLLQLIAAGLEVELCCSSVLFLVKVHHNQIVANTSLLGELDALWHSLRTSLVAGKNRIGFNLAGMKYIKRQVDASKTAFFEEA 882          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: T0QHH9_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QHH9_SAPDV)

HSP 1 Score: 163 bits (412), Expect = 1.500e-41
Identity = 107/280 (38.21%), Postives = 165/280 (58.93%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMME 840
            + WA+ V+ DGSF++S   DRSL  + R+D+ VF+EEE+EKELE +FEA+L+  + +     AP             +  AN   +AES  ATK++I++VK+GERL++A++LA  E K                   PG    N +LL   PL+Y+LR+L+              I+  +LE+ALLVLPF  V+ L K+L++L+AA LEVELC    +FL++VH  +IV++ S++  LD L  +LR  L ++++ +G N+AG++ + R VE  +T Y  E
Sbjct:  666 EVWAIAVARDGSFLISASQDRSLVKYARSDDQVFIEEEKEKELEAMFEADLNPSNTS-----APT------------LNGANTVLEAESATATKKTIQTVKSGERLIEAIDLAEHEAKAA----------------TPGG---NILLLGFSPLKYVLRSLRE-------------IRAQDLEEALLVLPFDYVQKLIKYLLQLIAAELEVELCCNSILFLVKVHHNQIVANASLLGELDTLWHSLRTNLVSAKNQIGFNLAGMKFIKRQVEANKTGYFEE 896          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A024UV74_9STRA (Utp12 domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UV74_9STRA)

HSP 1 Score: 158 bits (400), Expect = 6.140e-40
Identity = 107/295 (36.27%), Postives = 169/295 (57.29%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMMESEEDRLVKKMRQPSV 885
            + WA+ VS DGSFV+S   DRSL  + R D+ VF+EEE+EKEL+ +FE++L   + A     AP        E D    AA            KR++++VK+GERL++A+++A +E               QK    P V   N +LL   PL+++LR+++              I+  E+E+AL+VLPF  V+ L  +L++L+AA +EVE+C  C +FLLRVH  +IV++  ++  LD + G+LR QL +S++ +G N+AG++ + R V+Q +T Y+ E       KK ++ SV
Sbjct:  657 EVWAVAVSRDGSFVVSASQDRSLVKYTRGDDQVFVEEEKEKELDAMFESDLQPTNTA-----APTLGGTNVKEMDSSTTAA------------KRTVQTVKSGERLIEAIDIADREILA------------QKNSSNPDVVSTNFMLLGYAPLKFVLRSVRE-------------IRANEMEEALMVLPFEYVKKLLSYLLQLIAAEMEVEICCNCILFLLRVHHHQIVTNTILLGELDTMWGSLRAQLVSSKNRIGFNLAGMKYIKRQVDQTKTGYIEELGAAPATKKTKKQSV 909          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A485L7V7_9STRA (Aste57867_17075 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7V7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.890e-39
Identity = 99/280 (35.36%), Postives = 168/280 (60.00%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMME 840
            + WAL V+ DGSFV+S   DRSL  + R ++ VF+EEE+EKELE +FE++L+            P+       G   V+A       ES  A+KR++++VK+GERL++A+++A +E K  ++ E +                 N +LL   PL+++LR+++              I+  E+E+AL+VLPF  V+ L  +L++L+AA +EVE+C  C +FLLR+H  +IV+S +++  LD++  +LR QL  S++ +G N+AG++ + R ++Q +TA++ E
Sbjct:  671 EVWALAVAHDGSFVVSASQDRSLVKYARGEDQVFVEEEKEKELEAMFESDLN------------PTNTAAPTLGGLNVKAPE-----ESTTASKRTVQTVKSGERLIEAIDVADRELKQNKSGEASTT---------------NFMLLGFTPLKFVLRSVRE-------------IRANEMEEALMVLPFEYVKKLLSYLLQLIAAEMEVEICCNCVLFLLRLHHHQIVASTTLLGELDSMWSSLRNQLVTSKNRIGFNLAGMKYIKRQIDQHKTAFVEE 905          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: W7T9A4_9STRA (Beta transducin trp-asp domain-containing n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9A4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.620e-39
Identity = 107/283 (37.81%), Postives = 152/283 (53.71%), Query Frame = 1
Query:    1 QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQK-GEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMMESE 846
            + WA+ V   G  + +GG DRS+R+W R+D+ VF+EEER++ELE +FE      D  G  G            G+E                  + +ESVK GERL +ALE+   +  L     K    A+QK G P P  R PNP++LNL P R++L  L+             ++K P+LEQALLVLP   +  L + L RLL   +EVELC RC +FL R H   ++ S  ++ +L  LRG LR +L+  RD V  N+ GLR+L R VE+ + A+++  E
Sbjct:   41 EVWAMGVEGGGEVLATGGADRSVRVWERSDDQVFVEEERQRELEEMFE------DGVGKEG-----------RGEEXXXXXX------XXXXXXQHLESVKQGERLSEALEVMRADNGLEEEHLKFLKAARQKPGAPLPPPRAPNPLMLNLPPHRFLLFHLR-------------LLKGPDLEQALLVLPLDLMHLLLRGLCRLLREDMEVELCWRCLLFLFRTHHRLLLHSRDLMPLLMDLRGGLRERLKGFRDGVAMNVEGLRLLKREVEEGKQAFLVPGE 287          
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Match: A0A1Z5JEM4_FISSO (U3 small nucleolar RNA-associated protein 12 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEM4_FISSO)

HSP 1 Score: 152 bits (383), Expect = 1.240e-37
Identity = 103/281 (36.65%), Postives = 167/281 (59.43%), Query Frame = 1
Query:   10 ALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAELDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESVKAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNLFPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFLVRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLEASRDAVGCNMAGLRMLGRIVEQERTAYMMESEED 852
            +L VS  G+FVLSGG DR +R+W RT ++VF+EEERE+E+E +F+   DRD+   AA     S+  G  E +E    +N   Q+E+  A ++S+ SV +G+R+M+ALE A QE K +           +K   A   R+PNP++LN+ P  Y+L  L+              +++ ELEQ+LLVLP S +E L  +++ LL  G  VELC++ A+F+++ HQ +I+++ S+   L  L+  +R++L   RD +G ++A ++++ R+   ER   M   +ED
Sbjct:  777 SLAVSRTGAFVLSGGMDRQVRVWERTKDIVFIEEEREREMEQMFDRVNDRDEGGTAAIL---SRKRGNDEDEESESGSNDEPQSEA--AVRKSVLSVSSGDRIMEALEQADQETKNIALF--------RKTHGADATRQPNPLMLNMEPANYVLWVLKT-------------VRSAELEQSLLVLPVSHLERLLYYMIVLLRNGRGVELCSKVAVFMVKSHQNQIIANKSLAVPLRELKRLIRQRLGELRDMIGYDIAAMKVIARVAH-ERKLAMAPIQED 1030          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87132.16260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS39_ECTSI9.000e-12674.92Utp12 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S3XPK1_HETAK1.400e-6147.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XPJ0_HETAK1.990e-5948.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6Y6H3_9STRA2.050e-4542.46Utp12 domain-containing protein n=1 Tax=Pythium br... [more]
A0A1V9ZSC5_9STRA8.940e-4339.15Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QHH9_SAPDV1.500e-4138.21Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024UV74_9STRA6.140e-4036.27Utp12 domain-containing protein n=7 Tax=Aphanomyce... [more]
A0A485L7V7_9STRA2.890e-3935.36Aste57867_17075 protein n=1 Tax=Aphanomyces stella... [more]
W7T9A4_9STRA3.620e-3937.81Beta transducin trp-asp domain-containing n=1 Tax=... [more]
A0A1Z5JEM4_FISSO1.240e-3736.65U3 small nucleolar RNA-associated protein 12 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87132contigH-elongata_contig87132:390..1815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.3
Seed ortholog evalue3.2e-108
Seed eggNOG ortholog2880.D8LS39
Preferred nameWDR3
KEGG koko:K14556
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0306@1,KOG0306@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size894
Cds size894
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87132.16260.1prot_H-elongata_contig87132.16260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87132 390..1815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.1525366-CDS-H-elongata_contig87132:389..6091622931272.1525366-CDS-H-elongata_contig87132:389..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 390..609 +
1691679768.192765-CDS-H-elongata_contig87132:389..6091691679768.192765-CDS-H-elongata_contig87132:389..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 390..609 +
1622931272.168143-CDS-H-elongata_contig87132:783..10851622931272.168143-CDS-H-elongata_contig87132:783..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 784..1085 +
1691679768.205401-CDS-H-elongata_contig87132:783..10851691679768.205401-CDS-H-elongata_contig87132:783..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 784..1085 +
1622931272.187268-CDS-H-elongata_contig87132:1236..13891622931272.187268-CDS-H-elongata_contig87132:1236..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 1237..1389 +
1691679768.2307072-CDS-H-elongata_contig87132:1236..13891691679768.2307072-CDS-H-elongata_contig87132:1236..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 1237..1389 +
1622931272.2215989-CDS-H-elongata_contig87132:1596..18151622931272.2215989-CDS-H-elongata_contig87132:1596..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 1597..1815 +
1691679768.2426069-CDS-H-elongata_contig87132:1596..18151691679768.2426069-CDS-H-elongata_contig87132:1596..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87132 1597..1815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87132.16260.1

>prot_H-elongata_contig87132.16260.1 ID=prot_H-elongata_contig87132.16260.1|Name=mRNA_H-elongata_contig87132.16260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
QAWALEVSADGSFVLSGGHDRSLRIWRRTDEMVFLEEEREKELEGLFEAE
LDRDDVAGAAGFAPPSKPVGEVEGDEGVEAANGGAQAESGPATKRSIESV
KAGERLMDALELAAQEEKLMRADEKAAARAKQKGEPAPGVRRPNPVLLNL
FPLRYILRTLQARGDSGSRYPSCSMIKTPELEQALLVLPFSQVENLAKFL
VRLLAAGLEVELCARCAIFLLRVHQARIVSSGSMVAVLDALRGNLRRQLE
ASRDAVGCNMAGLRMLGRIVEQERTAYMMESEEDRLVKKMRQPSVNR*
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mRNA from alignment at H-elongata_contig87132:390..1815+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87132.16260.1 ID=mRNA_H-elongata_contig87132.16260.1|Name=mRNA_H-elongata_contig87132.16260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig87132:390..1815+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTGGGCCCTCGAAGTGTCGGCGGACGGTTCGTTTGTGCTGTCAGG AGGACACGACCGTTCGCTCCGCATCTGGCGTCGCACGGACGAGATGGTTT TCCTGGAGGAAGAGCGAGAGAAGGAGCTCGAGGGGCTCTTCGAGGCTGAA CTCGACAGGGACGATGTCGCCGGAGCCGCTGGATTTGCGCCCCCGTCGAA ACCTGTGGGTGAAGTGGAAGGTGAAGAGCGCGTTATAAGATTGTATGTGG GGACGTCACACTATGACAAAGCGGCAAGGGCCGAAAGAGCGACCCTGTGC TTGTGTGGATCCACGCGTTCTTTTGGTAGACTAGTCTCTCCCTCCGACCC GCCCGTGGAAGTTGATACAAATTGGACGCTCGTGCGAATCTCAGGCGACG AAGGGGTGGAGGCTGCGAACGGTGGCGCCCAGGCGGAGTCCGGTCCTGCG ACCAAGCGCTCGATCGAGTCCGTCAAGGCGGGCGAGAGACTCATGGACGC TCTCGAGCTGGCGGCGCAGGAGGAGAAGCTCATGCGCGCGGACGAGAAGG CCGCGGCGAGGGCAAAGCAAAAGGGAGAGCCGGCGCCCGGAGTCCGACGG CCGAACCCAGTTTTGCTCAACCTATTTCCTCTACGATACATCCTCCGGAC GCTCCAGGCACGAGGGGACAGCGGGTCACGATACCCCAGTTGCAGTGTGT GTGTGTTCGTTTTTGTGGTACCGTCAGTCGCTGGGCGAAGGAAGGGCGTT AAGAAGACAAGGACATACACCGGGCTTGTCTTGCCTTCCCCTTTTTGACG ATTTCATGCGATGTTCTCCTGTCCCACCGCTTTGTCGCCATCGCCAGATG ATCAAGACGCCGGAGCTGGAGCAAGCTCTGTTGGTGCTTCCGTTCTCACA GGTGGAGAATCTCGCCAAGTTCTTGGTAAGGCTACTCGCCGCCGGTCTGG AGGTGGAACTGTGCGCCCGATGCGCTATTTTCCTCCTCAGGGTGCATCAG GTGTGTGTCCGACGACATCTCCGCTTGCCTGTATACCGTGGTGCAATGAC TCGTCGCTTGTCTTGGTGAGAGCCGCTTTACCTTAGCCTCGCGTCTTCCC CCCCCGTGCGCTATTGACTGTATATGTGCTAAACGTTTGTCACCATTACC GTCGCGGTTTCCGCCGTGGTTTTGGCGCGGCGACAATGTTGTGTTCGCCG TGGCAAGGCGCGGATCGTGTCATCCGGCAGTATGGTTGCCGTCCTGGACG CCCTGCGCGGAAATCTTCGACGGCAGCTCGAGGCGTCCCGAGACGCGGTG GGATGTAACATGGCTGGCTTGCGCATGCTTGGGCGGATAGTGGAGCAGGA AAGGACGGCGTACATGATGGAGAGCGAGGAAGATCGTCTCGTAAAGAAGA TGCGGCAGCCTTCCGTGAACAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig87132:390..1815+

>mRNA_H-elongata_contig87132.16260.1 ID=mRNA_H-elongata_contig87132.16260.1|Name=mRNA_H-elongata_contig87132.16260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig87132:390..1815+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTGGGCCCTCGAAGTGTCGGCGGACGGTTCGTTTGTGCTGTCAGG
AGGACACGACCGTTCGCTCCGCATCTGGCGTCGCACGGACGAGATGGTTT
TCCTGGAGGAAGAGCGAGAGAAGGAGCTCGAGGGGCTCTTCGAGGCTGAA
CTCGACAGGGACGATGTCGCCGGAGCCGCTGGATTTGCGCCCCCGTCGAA
ACCTGTGGGTGAAGTGGAAGCAGGCCTGGGCCCTCGAAGTGTCGGCGGAC
GGTTCGTTTGTGCTGTCAGGAGGACACGACCGTTCGCTCCGCATCTGGCG
TCGCACGGACGAGATGGTTTTCCTGGAGGAAGAGCGAGAGAAGGAGCTCG
AGGGGCTCTTCGAGGCTGAACTCGACAGGGACGATGTCGCCGGAGCCGCT
GGATTTGCGCCCCCGTCGAAACCTGTGGGTGAAGTGGAAGGCGACGAAGG
GGTGGAGGCTGCGAACGGTGGCGCCCAGGCGGAGTCCGGTCCTGCGACCA
AGCGCTCGATCGAGTCCGTCAAGGCGGGCGAGAGACTCATGGACGCTCTC
GAGCTGGCGGCGCAGGAGGAGAAGCTCATGCGCGCGGACGAGAAGGCCGC
GGCGAGGGCAAAGCAAAAGGGAGAGCCGGCGCCCGGAGTCCGACGGCCGA
ACCCAGTTTTGCTCAACCTATTTCCTCTACGATACATCCTCCGGACGCTC
CAGGCACGAGGGGACAGCGGGTCACGATACCCCAGTTGCAGTGCGACGAA
GGGGTGGAGGCTGCGAACGGTGGCGCCCAGGCGGAGTCCGGTCCTGCGAC
CAAGCGCTCGATCGAGTCCGTCAAGGCGGGCGAGAGACTCATGGACGCTC
TCGAGCTGGCGGCGCAGGAGGAGAAGCTCATGCGCGCGGACGAGAAGGCC
GCGGCGAGGGCAAAGCAAAAGGGAGAGCCGGCGCCCGGAGTCCGACGGCC
GAACCCAGTTTTGCTCAACCTATTTCCTCTACGATACATCCTCCGGACGC
TCCAGGCACGAGGGGACAGCGGGTCACGATACCCCAGTTGCAGTATGATC
AAGACGCCGGAGCTGGAGCAAGCTCTGTTGGTGCTTCCGTTCTCACAGGT
GGAGAATCTCGCCAAGTTCTTGGTAAGGCTACTCGCCGCCGGTCTGGAGG
TGGAACTGTGCGCCCGATGCGCTATTTTCCTCCTCAGGGTGCATCAGATG
ATCAAGACGCCGGAGCTGGAGCAAGCTCTGTTGGTGCTTCCGTTCTCACA
GGTGGAGAATCTCGCCAAGTTCTTGGTAAGGCTACTCGCCGCCGGTCTGG
AGGTGGAACTGTGCGCCCGATGCGCTATTTTCCTCCTCAGGGTGCATCAG
GCGCGGATCGTGTCATCCGGCAGTATGGTTGCCGTCCTGGACGCCCTGCG
CGGAAATCTTCGACGGCAGCTCGAGGCGTCCCGAGACGCGGTGGGATGTA
ACATGGCTGGCTTGCGCATGCTTGGGCGGATAGTGGAGCAGGAAAGGACG
GCGTACATGATGGAGAGCGAGGAAGATCGTCTCGTAAAGAAGATGCGGCA
GCCTTCCGTGAACAGATGAGCGCGGATCGTGTCATCCGGCAGTATGGTTG
CCGTCCTGGACGCCCTGCGCGGAAATCTTCGACGGCAGCTCGAGGCGTCC
CGAGACGCGGTGGGATGTAACATGGCTGGCTTGCGCATGCTTGGGCGGAT
AGTGGAGCAGGAAAGGACGGCGTACATGATGGAGAGCGAGGAAGATCGTC
TCGTAAAGAAGATGCGGCAGCCTTCCGTGAACAGATGA
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