mRNA_H-elongata_contig86944.16244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86944.16244.1
Unique NamemRNA_H-elongata_contig86944.16244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 6.530e-40
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
            LGALLV+QIG++ SLW+L G   FF+P+GIFGMDR LG S+ ++  W  +  KGRNVNVLS+ARFFLF SRD WFEIGLPLFLR ELGW+ E VGL++AG   +  ++ +
Sbjct:  233 LGALLVAQIGYVKSLWILVGICAFFVPVGIFGMDRGLGVSDERKTDWNRLFRKGRNVNVLSAARFFLFGSRDVWFEIGLPLFLRAELGWKRELVGLIMAGLFAVNSSVHS 342          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A836CEU1_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.610e-34
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMTT 454
            LGA LV  IG++NSL VL   LV F+PL I  MDR LG+   K+I W  V +KGR+VNVLS+ARF+LF SRD WFEI LPLFL    GW    VGL L  Y+++YGNLQA +T
Sbjct:  181 LGAALVGSIGFVNSLLVLIVILVPFVPLSIMYMDRRLGQQPVKKINWHSVFHKGRDVNVLSAARFWLFGSRDVWFEIALPLFLANGFGWSDAYVGLFLGAYVVVYGNLQAFST 293          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A836CH56_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.400e-30
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKE-IKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMTT 454
            +GA+LV  IG++ SL+ L   +  F PL +  MD+ LGR   K+ + W  V  KG +VN LS+ARF+LF SRD WFEI LPLFL+   GW    VGL +AGYIIIYGNLQA +T
Sbjct:  199 IGAVLVGTIGYVWSLFFLICVIAIFAPLAMIFMDKDLGRQAVKKKVNWSSVFKKGHDVNTLSAARFWLFGSRDIWFEIALPLFLKNGFGWASTYVGLFMAGYIIIYGNLQAFST 312          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A7W5H772_9BACT (MFS family permease n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5H772_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.220e-23
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAM 448
            LG +L+  IG++ SLW +AG L   L + +F ++  +GRS++K  K+  + +K R +NVLS +RFFLF+SRD WF +GLP+FL  +L W    VG  LA ++I YG +QAM
Sbjct:  161 LGGVLLGWIGFVASLWAMAGVLTIILVVSVFMLNADMGRSKSKA-KFSQLFSKSREINVLSISRFFLFSSRDVWFVVGLPVFLASQLSWGFAGVGAFLAAWVIGYGMVQAM 270          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A454XNH9_OSTTA (Major facilitator superfamily domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XNH9_OSTTA)

HSP 1 Score: 104 bits (260), Expect = 1.580e-23
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLE--LGWRGETVGLVLAGYIIIYGNLQAMT 451
            +GA ++  + +  +LW   G +V  LP GIFG+D  LGR   + I    V  +  N+NVLS +R FLF SRD WFE+ LP FLR    +GW    VG +LAGYII+YG LQA T
Sbjct:  168 IGAAMLG-VSYEAALWTQIGIIVVALPFGIFGLDSSLGRVGKENITLSAVFKQNYNMNVLSLSRMFLFGSRDLWFEVPLPFFLRSAEGMGWPRSAVGAMLAGYIIVYGQLQAWT 280          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: M5U350_9BACT (Major facilitator superfamily protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5U350_9BACT)

HSP 1 Score: 102 bits (253), Expect = 9.620e-23
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
            LG ++++ +G++ SLW +AG L   L L +F +D  +GRS+ K  K+  +  K R +NVLS ARFFLF+SRD WF +GLP+FL  +L W    VG  LA ++I YG +QA
Sbjct:  137 LGGVMLTGLGFVMSLWAMAGVLAVILLLALFMLDADMGRSKAKT-KFTQLFAKSREINVLSIARFFLFSSRDVWFVVGLPIFLASQLEWGFTGVGAFLAAWVIGYGFVQA 245          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: UPI001C1C28CE (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1C28CE)

HSP 1 Score: 100 bits (250), Expect = 1.690e-22
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  119 GALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKE-IKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMT 451
            GALL   IG+I SL VL    +  +P  +F +D  L  S++K+ +  K + NKGRNVN+LS AR FLF SRD WFE+ +PLFLR  +GW     G  LAG+++ YG +Q+ T
Sbjct:  104 GALLYRFIGYIPSLLVLLVMNLIVIPPALFYLDHTLAVSKSKKKLTLKEIFNKGRNVNILSLARMFLFGSRDLWFEVPVPLFLRGPIGWSYLETGAFLAGWVMFYGAIQSST 215          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A2E6SD17_9BACT (MFS transporter n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E6SD17_9BACT)

HSP 1 Score: 101 bits (251), Expect = 2.140e-22
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAM 448
            LG LL+ ++G++ +LW +AG L   L +G   +   LG+S+ K +K+  + +K R +NVLS ARFFLF SRD WF +GLP+FL+  LGW    VG  +A ++I YG +Q +
Sbjct:  163 LGGLLLGELGFVLALWTMAGALALVLTVGAICLREDLGKSKEK-VKFTQLFSKSREINVLSLARFFLFGSRDIWFVVGLPVFLKESLGWSFAGVGAFMAAWVIGYGLVQTV 272          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A2E0V2Y6_9BACT (MFS transporter n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A2E0V2Y6_9BACT)

HSP 1 Score: 100 bits (250), Expect = 2.660e-22
Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  119 GALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
            G +L+  +G+  +LW++AG L   L  GI G+ + LGRS+ K++++  + +K R +N+LS ARFFLF SRD WF +GLP+FL+  LGW    VG  +A ++I YG +QA
Sbjct:  166 GGVLLGWLGFAPALWMMAGGLFLLLVGGIIGLRQDLGRSK-KKVRFNQLFSKSREINLLSLARFFLFGSRDIWFVVGLPVFLKETLGWSFTAVGAFMAAWVIGYGLVQA 273          
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A1C3RF05_9PROT (Permease of the major facilitator superfamily n=1 Tax=Candidatus Terasakiella magnetica TaxID=1867952 RepID=A0A1C3RF05_9PROT)

HSP 1 Score: 100 bits (249), Expect = 3.790e-22
Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
            LG LL+  +G+  +LW +AG L   L   +  + R LG++++K I  K + +K R +N+LS AR FLFASRD WF +GLP+F+  +LGW  + +GL +A +I+ YG +QA
Sbjct:  157 LGGLLLEMLGFQMALWSMAGALALILIFAVAAVQRELGKAKSK-ITGKDLFSKSREINILSFARIFLFASRDVWFVVGLPIFMAEKLGWSFDEIGLFMAAWIVGYGIIQA 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIX3_9PHAE6.530e-4060.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEU1_9STRA3.610e-3458.41Putative membrane transporter n=1 Tax=Tribonema mi... [more]
A0A836CH56_9STRA6.400e-3053.51Putative membrane transporter n=1 Tax=Tribonema mi... [more]
A0A7W5H772_9BACT1.220e-2345.95MFS family permease n=2 Tax=Rhodopirellula TaxID=2... [more]
A0A454XNH9_OSTTA1.580e-2347.37Major facilitator superfamily domain-containing pr... [more]
M5U350_9BACT9.620e-2346.36Major facilitator superfamily protein n=1 Tax=Rhod... [more]
UPI001C1C28CE1.690e-2247.32Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A2E6SD17_9BACT2.140e-2244.14MFS transporter n=1 Tax=Roseibacillus sp. TaxID=20... [more]
A0A2E0V2Y6_9BACT2.660e-2244.95MFS transporter n=2 Tax=Verrucomicrobiaceae TaxID=... [more]
A0A1C3RF05_9PROT3.790e-2243.64Permease of the major facilitator superfamily n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86944contigH-elongata_contig86944:595..2195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score84.0
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog10224.NP_001171775.1
EggNOG free text desc.Major Facilitator
EggNOG OGs2CMXH@1,2QSJF@2759,39ZBM@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-12_000960.1
Exons4
Model size456
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86944.16244.1prot_H-elongata_contig86944.16244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86944 1163..2195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.881994-UTR-H-elongata_contig86944:594..7061622931269.881994-UTR-H-elongata_contig86944:594..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86944 595..706 +
1691679767.3921146-UTR-H-elongata_contig86944:594..7061691679767.3921146-UTR-H-elongata_contig86944:594..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86944 595..706 +
1622931269.8954012-UTR-H-elongata_contig86944:1063..11621622931269.8954012-UTR-H-elongata_contig86944:1063..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86944 1064..1162 +
1691679767.4098868-UTR-H-elongata_contig86944:1063..11621691679767.4098868-UTR-H-elongata_contig86944:1063..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86944 1064..1162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.9107609-CDS-H-elongata_contig86944:1162..11701622931269.9107609-CDS-H-elongata_contig86944:1162..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 1163..1170 +
1691679767.4192696-CDS-H-elongata_contig86944:1162..11701691679767.4192696-CDS-H-elongata_contig86944:1162..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 1163..1170 +
1622931269.9256184-CDS-H-elongata_contig86944:1520..17141622931269.9256184-CDS-H-elongata_contig86944:1520..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 1521..1714 +
1691679767.4304514-CDS-H-elongata_contig86944:1520..17141691679767.4304514-CDS-H-elongata_contig86944:1520..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 1521..1714 +
1622931269.9446454-CDS-H-elongata_contig86944:2154..21951622931269.9446454-CDS-H-elongata_contig86944:2154..2195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 2155..2195 +
1691679767.4483833-CDS-H-elongata_contig86944:2154..21951691679767.4483833-CDS-H-elongata_contig86944:2154..2195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86944 2155..2195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86944.16244.1

>prot_H-elongata_contig86944.16244.1 ID=prot_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLF
LRLELGWRGETVGLVLAGYIIIYGNLQAMTT
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mRNA from alignment at H-elongata_contig86944:595..2195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86944.16244.1 ID=mRNA_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1601bp|location=Sequence derived from alignment at H-elongata_contig86944:595..2195+ (Himanthalia elongata Himel1 dioecious)
AGGATTTCATGAAGCTAACAGGCAAAGCTACACCTAAGCTGGTGACCAAG GAAGGAGCGGAAGGAAGACTGTTCCAACTAGTCGCGTGGCTGACCGGCAT GAAGAACGCGCTCAAAGGGTGAGATCTCTCTCCAACTTCCACCCTTATTT CATCTATATAATGTGGCCCACTTTGGCGATCCGGTCGCAACCCCCTTTCC GCATCGTCGTTGTTGGTACTGAACTACGGCAATGATGCACAAATATTTTT TCAAGCTCGGGCAGAATCCCACAATCAGACGGCGTGTATGGCATCGTATA ATATACTGTGTTATGTGCGCTACGAGTGTATATTTTAGTGTACTCAACGG TTCTGCAAGGCAACGGTGAAAAACGGATCTAGAAGACGCACAATACTCGA TACAATTTAAAGATCATACAATATCAACGTGAGATTGCCCGATTGTTCTT CCCCGATAGGTTCGGATCCGCCTTGGGCGCGCTGTTGGTATCGCAAATAG GCTGGATCAACAGCCTATGGGTTCTCGCCGGCTTTCTCGTGTTCTTCCTC CCGTTAGGAATCTTCGGCATGGATCGGTAACGGCGGGACGCAACTCATTA TTACCCACCTTTTCCGGGGAGGCGTATTGATATATATATATTTCGTTTTA AATATAATCGGGTACGAGTTTGGGCGTTGTGATCATGTTACTGGTAGTGA GCAGAATCTTGTAAACCTACGGTTGGGAAGTCAATTTGTATCATACAGCA GAAATATTTACATAATATTATTGCTATAATAGTAGAAGGGTATTGATGAG ACATATATTATTCTGGCGTTGGTACTTCGTTCTGATCCCACGAGGTGGTT CTCACCGCTGCCCACAAAAATACACGCCGCACCCTCAAAATTCAGTCACA ACGGCACGCGTTGATCATTTTCCCAGGTGTTTGGGCAGGTCGGAGACGAA GGAGATCAAGTGGAAAGGGGTTATCAACAAGGGGCGTAATGTGAACGTGC TGTCTTCCGCGAGGTTCTTCCTCTTTGCGTCGCGGGATACTTGGTTTGAA ATCGGTCTCCCTCTTTTTCTGAGGCTCGAGCTTGGATGGAGGGGAGAGAC TGTTGGTCTCGTTCTTGCTGGTAAACATATGCTCCTTGTTGCGCGGGCAC CGTATTTCTCATCGCCCGAGTAACATAATTGATTTTGATAGTTCCAACTC ACAACTGCATATACCCTAACCGAATCATTATCACTTGTGTACACGCCGTA TTACATTTGGCAAACACCCTGCAGCCCTAGTACGCAAGTATGGTGACATT GATTATGCGGCGACATAGCTGCGAATATCGTTATCAACTTAGAAACTTTA TTTGCCCACCTACGTCAAGTTGTAGAGGAGCTTACGTGTTCGCATTTGGC AAAACGTCATCTTCGCGCCTCCGCGCCCGCCAGTTTCATGATGACTTCCT TCATGAAGCATGCCATCATCTAGACTAGGACAGTAAGATATTGCTGACAC CGCAATCCACCGTATCCCTCGTTTGAAAATTGAATCCGAATAATATATTC GGGGTGGTAGGATACATCATTATATATGGCAACCTACAAGCAATGACGAC G
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Coding sequence (CDS) from alignment at H-elongata_contig86944:595..2195+

>mRNA_H-elongata_contig86944.16244.1 ID=mRNA_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig86944:595..2195+ (Himanthalia elongata Himel1 dioecious)
ATGGATCGATGGATCGGTGTTTGGGCAGGTCGGAGACGAAGGAGATCAAG
TGGAAAGGGGTTATCAACAAGGGGCGTAATGTGAACGTGCTGTCTTCCGC
GAGGTTCTTCCTCTTTGCGTCGCGGGATACTTGGTTTGAAATCGGTCTCC
CTCTTTTTCTGAGGCTCGAGCTTGGATGGAGGGGAGAGACTGTTGGTCTC
GTTCTTGCTGGTGTTTGGGCAGGTCGGAGACGAAGGAGATCAAGTGGAAA
GGGGTTATCAACAAGGGGCGTAATGTGAACGTGCTGTCTTCCGCGAGGTT
CTTCCTCTTTGCGTCGCGGGATACTTGGTTTGAAATCGGTCTCCCTCTTT
TTCTGAGGCTCGAGCTTGGATGGAGGGGAGAGACTGTTGGTCTCGTTCTT
GCTGGATACATCATTATATATGGCAACCTACAAGCAATGACGACGGATAC
ATCATTATATATGGCAACCTACAAGCAATGACGACG
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