mRNA_H-elongata_contig86944.16244.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 6.530e-40 Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
LGALLV+QIG++ SLW+L G FF+P+GIFGMDR LG S+ ++ W + KGRNVNVLS+ARFFLF SRD WFEIGLPLFLR ELGW+ E VGL++AG + ++ +
Sbjct: 233 LGALLVAQIGYVKSLWILVGICAFFVPVGIFGMDRGLGVSDERKTDWNRLFRKGRNVNVLSAARFFLFGSRDVWFEIGLPLFLRAELGWKRELVGLIMAGLFAVNSSVHS 342
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A836CEU1_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA) HSP 1 Score: 133 bits (334), Expect = 3.610e-34 Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMTT 454
LGA LV IG++NSL VL LV F+PL I MDR LG+ K+I W V +KGR+VNVLS+ARF+LF SRD WFEI LPLFL GW VGL L Y+++YGNLQA +T
Sbjct: 181 LGAALVGSIGFVNSLLVLIVILVPFVPLSIMYMDRRLGQQPVKKINWHSVFHKGRDVNVLSAARFWLFGSRDVWFEIALPLFLANGFGWSDAYVGLFLGAYVVVYGNLQAFST 293
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A836CH56_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA) HSP 1 Score: 122 bits (307), Expect = 6.400e-30 Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKE-IKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMTT 454
+GA+LV IG++ SL+ L + F PL + MD+ LGR K+ + W V KG +VN LS+ARF+LF SRD WFEI LPLFL+ GW VGL +AGYIIIYGNLQA +T
Sbjct: 199 IGAVLVGTIGYVWSLFFLICVIAIFAPLAMIFMDKDLGRQAVKKKVNWSSVFKKGHDVNTLSAARFWLFGSRDIWFEIALPLFLKNGFGWASTYVGLFMAGYIIIYGNLQAFST 312
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A7W5H772_9BACT (MFS family permease n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5H772_9BACT) HSP 1 Score: 104 bits (260), Expect = 1.220e-23 Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAM 448
LG +L+ IG++ SLW +AG L L + +F ++ +GRS++K K+ + +K R +NVLS +RFFLF+SRD WF +GLP+FL +L W VG LA ++I YG +QAM
Sbjct: 161 LGGVLLGWIGFVASLWAMAGVLTIILVVSVFMLNADMGRSKSKA-KFSQLFSKSREINVLSISRFFLFSSRDVWFVVGLPVFLASQLSWGFAGVGAFLAAWVIGYGMVQAM 270
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A454XNH9_OSTTA (Major facilitator superfamily domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XNH9_OSTTA) HSP 1 Score: 104 bits (260), Expect = 1.580e-23 Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLE--LGWRGETVGLVLAGYIIIYGNLQAMT 451
+GA ++ + + +LW G +V LP GIFG+D LGR + I V + N+NVLS +R FLF SRD WFE+ LP FLR +GW VG +LAGYII+YG LQA T
Sbjct: 168 IGAAMLG-VSYEAALWTQIGIIVVALPFGIFGLDSSLGRVGKENITLSAVFKQNYNMNVLSLSRMFLFGSRDLWFEVPLPFFLRSAEGMGWPRSAVGAMLAGYIIVYGQLQAWT 280
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: M5U350_9BACT (Major facilitator superfamily protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5U350_9BACT) HSP 1 Score: 102 bits (253), Expect = 9.620e-23 Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
LG ++++ +G++ SLW +AG L L L +F +D +GRS+ K K+ + K R +NVLS ARFFLF+SRD WF +GLP+FL +L W VG LA ++I YG +QA
Sbjct: 137 LGGVMLTGLGFVMSLWAMAGVLAVILLLALFMLDADMGRSKAKT-KFTQLFAKSREINVLSIARFFLFSSRDVWFVVGLPIFLASQLEWGFTGVGAFLAAWVIGYGFVQA 245
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: UPI001C1C28CE (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1C28CE) HSP 1 Score: 100 bits (250), Expect = 1.690e-22 Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 2
Query: 119 GALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKE-IKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAMT 451
GALL IG+I SL VL + +P +F +D L S++K+ + K + NKGRNVN+LS AR FLF SRD WFE+ +PLFLR +GW G LAG+++ YG +Q+ T
Sbjct: 104 GALLYRFIGYIPSLLVLLVMNLIVIPPALFYLDHTLAVSKSKKKLTLKEIFNKGRNVNILSLARMFLFGSRDLWFEVPVPLFLRGPIGWSYLETGAFLAGWVMFYGAIQSST 215
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A2E6SD17_9BACT (MFS transporter n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E6SD17_9BACT) HSP 1 Score: 101 bits (251), Expect = 2.140e-22 Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQAM 448
LG LL+ ++G++ +LW +AG L L +G + LG+S+ K +K+ + +K R +NVLS ARFFLF SRD WF +GLP+FL+ LGW VG +A ++I YG +Q +
Sbjct: 163 LGGLLLGELGFVLALWTMAGALALVLTVGAICLREDLGKSKEK-VKFTQLFSKSREINVLSLARFFLFGSRDIWFVVGLPVFLKESLGWSFAGVGAFMAAWVIGYGLVQTV 272
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A2E0V2Y6_9BACT (MFS transporter n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A2E0V2Y6_9BACT) HSP 1 Score: 100 bits (250), Expect = 2.660e-22 Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 2
Query: 119 GALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
G +L+ +G+ +LW++AG L L GI G+ + LGRS+ K++++ + +K R +N+LS ARFFLF SRD WF +GLP+FL+ LGW VG +A ++I YG +QA
Sbjct: 166 GGVLLGWLGFAPALWMMAGGLFLLLVGGIIGLRQDLGRSK-KKVRFNQLFSKSREINLLSLARFFLFGSRDIWFVVGLPVFLKETLGWSFTAVGAFMAAWVIGYGLVQA 273
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Match: A0A1C3RF05_9PROT (Permease of the major facilitator superfamily n=1 Tax=Candidatus Terasakiella magnetica TaxID=1867952 RepID=A0A1C3RF05_9PROT) HSP 1 Score: 100 bits (249), Expect = 3.790e-22 Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 2
Query: 116 LGALLVSQIGWINSLWVLAGFLVFFLPLGIFGMDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFLRLELGWRGETVGLVLAGYIIIYGNLQA 445
LG LL+ +G+ +LW +AG L L + + R LG++++K I K + +K R +N+LS AR FLFASRD WF +GLP+F+ +LGW + +GL +A +I+ YG +QA
Sbjct: 157 LGGLLLEMLGFQMALWSMAGALALILIFAVAAVQRELGKAKSK-ITGKDLFSKSREINILSFARIFLFASRDVWFVVGLPIFMAEKLGWSFDEIGLFMAAWIVGYGIIQA 265 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86944.16244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86944.16244.1 >prot_H-elongata_contig86944.16244.1 ID=prot_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MDRCLGRSETKEIKWKGVINKGRNVNVLSSARFFLFASRDTWFEIGLPLFback to top mRNA from alignment at H-elongata_contig86944:595..2195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86944.16244.1 ID=mRNA_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1601bp|location=Sequence derived from alignment at H-elongata_contig86944:595..2195+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86944:595..2195+ >mRNA_H-elongata_contig86944.16244.1 ID=mRNA_H-elongata_contig86944.16244.1|Name=mRNA_H-elongata_contig86944.16244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig86944:595..2195+ (Himanthalia elongata Himel1 dioecious)back to top |