mRNA_H-elongata_contig86868.16241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86868.16241.1
Unique NamemRNA_H-elongata_contig86868.16241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86868.16241.1 vs. uniprot
Match: A0A836CJA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.150e-11
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 2 
Query:   17 VSSEEKPTDCLSCRVIGSTTMLGVSAYGIFTRAQTPATQRGHRAFLLGVSTLFAAAGIARAVWT 208
            +S    P DCLSC++IGS T LG+S Y      QTP  Q G+R F+   +  FA  GIARAVWT
Sbjct:    1 MSERPPPQDCLSCKIIGSCTFLGLSGYTFMHYLQTPKAQVGNRMFMAAAAVGFAGVGIARAVWT 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86868.16241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJA3_9STRA6.150e-1150.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86868contigH-elongata_contig86868:500..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size954
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86868.16241.1prot_H-elongata_contig86868.16241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86868 501..958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.5017195-UTR-H-elongata_contig86868:499..5001622931269.5017195-UTR-H-elongata_contig86868:499..500Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86868 500..500 +
1691679767.205397-UTR-H-elongata_contig86868:499..5001691679767.205397-UTR-H-elongata_contig86868:499..500Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86868 500..500 +
1622931269.5551386-UTR-H-elongata_contig86868:958..16351622931269.5551386-UTR-H-elongata_contig86868:958..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86868 959..1635 +
1691679767.236655-UTR-H-elongata_contig86868:958..16351691679767.236655-UTR-H-elongata_contig86868:958..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86868 959..1635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.5291996-CDS-H-elongata_contig86868:500..5501622931269.5291996-CDS-H-elongata_contig86868:500..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86868 501..550 +
1691679767.2184567-CDS-H-elongata_contig86868:500..5501691679767.2184567-CDS-H-elongata_contig86868:500..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86868 501..550 +
1622931269.543465-CDS-H-elongata_contig86868:732..9581622931269.543465-CDS-H-elongata_contig86868:732..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86868 733..958 +
1691679767.2276776-CDS-H-elongata_contig86868:732..9581691679767.2276776-CDS-H-elongata_contig86868:732..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86868 733..958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86868.16241.1

>prot_H-elongata_contig86868.16241.1 ID=prot_H-elongata_contig86868.16241.1|Name=mRNA_H-elongata_contig86868.16241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSEDNVSSEEKPTDCLSCRVIGSTTMLGVSAYGIFTRAQTPATQRGHRAF
LLGVSTLFAAAGIARAVWTDNDDRGDHPDKQHRGKETTHSS*
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mRNA from alignment at H-elongata_contig86868:500..1635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86868.16241.1 ID=mRNA_H-elongata_contig86868.16241.1|Name=mRNA_H-elongata_contig86868.16241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1136bp|location=Sequence derived from alignment at H-elongata_contig86868:500..1635+ (Himanthalia elongata Himel1 dioecious)
CATGTCCGAGGATAACGTGAGCTCAGAGGAAAAGCCAACCGACTGCTTAA
GGTTCGTGCACCCAGAATGCACATTTTATCACACACTTTGGTGCTAAAAA
GCTGATCAAGTTTCCCTTTGTAGATCGTCTTACATAAACGATTGCAGTTG
GTTAACCCTGCTGTGGACAATTCACACAGCGTCTTTCCCTACTCTCCTTT
ATGATCCTGTTGTTGCTGTCGCTACAACTACAGCTGTCGCGTAATCGGCT
CGACGACAATGCTAGGCGTGTCCGCCTACGGTATATTCACCAGAGCGCAG
ACGCCAGCGACACAGCGAGGCCACCGCGCGTTCCTTCTCGGGGTATCGAC
ATTATTTGCTGCGGCTGGAATTGCCCGAGCGGTATGGACGGACAACGATG
ATCGCGGAGACCATCCAGACAAGCAACATCGAGGAAAAGAAACAACACAT
TCGTCATGAGCGGATCCGCCGCGATGATACCCGCAGTAATAGTGTTATTA
GCTATACCAGCAGATATGAAGTGCAACTTCAAGTGAGGAGCGATTTGCAG
CATGCTTGGTTTTATATAGATATAGAATAGGTGCACTACCTGGTGTGTAC
CACTGTACCTGGATCTTCTTCGCGTGCCTGATACAGCGCTTGCTGATACA
ACTGACTGATTTTCGAAACACGTTATGATGCCCTCGGCAGGTCAAGATCT
CCGTGTGCTTGTACACTAGCTCACGATCCTATAGAAGAGTGGACTGGAGG
TTAGGTTGGAGTCAGCCTATATTTTTATTTTAAAAAGCTTGAACTCATTC
CAGCCCTCCAACCGTGCTCCAAACAGCGGGTGCAAGCATTTCACGTGGTT
TGGACTATTCCTGGAAAAGTAATTCGAGAGGTATATATCGGTCGTCCCGG
TGGTCAAGTTAGCAATGTCGAAACCTTCCGATGTTGAGACGTGTGAGTTC
GAACTTCGGCGCAGTCACACGAATTGAGATTTTTCTCACGTCATGCCCAA
CAAGTGGAGAATGTTTATTTCGTGGGTACACAAGATTCGACATCACTGTC
GACGAGGGAAAGGGACTGCTGAATCCTTCTCGCGGTAAAAATTTAAGATA
AGCACCGCAAAAGGAAGGTAAAGCGCAAAAGGAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig86868:500..1635+

>mRNA_H-elongata_contig86868.16241.1 ID=mRNA_H-elongata_contig86868.16241.1|Name=mRNA_H-elongata_contig86868.16241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig86868:500..1635+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGGATAACGTGAGCTCAGAGGAAAAGCCAACCGACTGCTTAAG
ATGTCCGAGGATAACGTGAGCTCAGAGGAAAAGCCAACCGACTGCTTAAG
CTGTCGCGTAATCGGCTCGACGACAATGCTAGGCGTGTCCGCCTACGGTA
TATTCACCAGAGCGCAGACGCCAGCGACACAGCGAGGCCACCGCGCGTTC
CTTCTCGGGGTATCGACATTATTTGCTGCGGCTGGAATTGCCCGAGCGGT
ATGGACGGACAACGATGATCGCGGAGACCATCCAGACAAGCAACATCGAG
GAAAAGAAACAACACATTCGTCATGACTGTCGCGTAATCGGCTCGACGAC
AATGCTAGGCGTGTCCGCCTACGGTATATTCACCAGAGCGCAGACGCCAG
CGACACAGCGAGGCCACCGCGCGTTCCTTCTCGGGGTATCGACATTATTT
GCTGCGGCTGGAATTGCCCGAGCGGTATGGACGGACAACGATGATCGCGG
AGACCATCCAGACAAGCAACATCGAGGAAAAGAAACAACACATTCGTCAT
GA
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