mRNA_H-elongata_contig86799.16238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86799.16238.1
Unique NamemRNA_H-elongata_contig86799.16238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.640e-35
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMKPK LT HE+GLLEYLEDIIGSDRFVEA EEA + V+ LN+QR EKLNRLK+AEKE+DSL+G K +A EFLRLDA IR+K N
Sbjct:  230 RFLILQGEVEQIAMMKPKGLTEHEDGLLEYLEDIIGSDRFVEAAEEAARRVEELNDQRTEKLNRLKLAEKEKDSLEGDKQKAYEFLRLDAAIRKKQN 326
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A7S3GYG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYG4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.380e-31
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMKPKALTPHEEGLLEYLEDIIGS++FVE   E  K +D + EQR EK+NRLK++EKERD+L G+K EA+ F+  +  IR + N
Sbjct:   13 RFLILQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSNKFVEPIAEVSKALDEIVEQRVEKVNRLKISEKERDNLSGSKLEAEAFIAKEKEIRREQN 109
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A6G0WSE3_9STRA (Structural maintenance of chromosomes protein 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.000e-29
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMK KA  PH+EGLLEYLEDIIGS+++VE TEEA+K V+A NE+R EKLNR+KV EKE+D+L+GAK EAQE+L  +  +  K N
Sbjct:  245 RFLILQGEVEQIAMMKSKADNPHDEGLLEYLEDIIGSNKYVEPTEEALKQVEAFNEERVEKLNRVKVVEKEKDNLEGAKAEAQEYLEKERDVYLKTN 341
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A485LJE1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJE1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.030e-28
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMK KA  PH+EGLLEYLEDIIGS+++VE TEEA+K V+  NE+R EKLNR+KV EKE+D+L+GAK EAQE+L  +  +  K N
Sbjct:  254 RFLILQGEVEQIAMMKSKAENPHDEGLLEYLEDIIGSNKYVEPTEEALKQVETFNEERVEKLNRVKVVEKEKDNLEGAKAEAQEYLEKERDVYLKTN 350
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: UPI0003F08412 (structural maintenance of chromosomes protein 4-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08412)

HSP 1 Score: 115 bits (287), Expect = 9.580e-28
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQI+MMKPKALT HEEG+LEYLEDIIGS ++ E  EE  K V+ LNEQR EKLNR+KV EKE+D L+G K+EA  +L L+  I +K N
Sbjct:  220 RFLILQGEVEQISMMKPKALTEHEEGMLEYLEDIIGSSKYKEPIEELAKQVEELNEQRGEKLNRVKVVEKEKDELEGTKNEAMAYLLLENNISKKKN 316
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A7S6N1_NEMVE (Structural maintenance of chromosomes protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7S6N1_NEMVE)

HSP 1 Score: 113 bits (283), Expect = 3.320e-27
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQI+MMKPKALT HE+G+LEYLEDIIGS R+ E  EE  K V+ LNE R EKLNR+K  EKE+D L+G+KDEA E++ ++  I  K N
Sbjct:  156 RFLILQGEVEQISMMKPKALTEHEDGMLEYLEDIIGSSRYKEPIEELAKEVEVLNEARGEKLNRVKAVEKEKDELEGSKDEAVEYINMENGITRKRN 252
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A7S2K8C5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2K8C5_9DINO)

HSP 1 Score: 110 bits (275), Expect = 4.770e-27
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDA 270
            RF+  QGEVEQI++MKPKALTPHE+GLLEYLEDIIGS+R VE  EEA  +V+ L EQR EKLNRL+VAE+ERD+L G + EA+ ++  +A
Sbjct:  172 RFLILQGEVEQISLMKPKALTPHEDGLLEYLEDIIGSNRLVEPIEEAEGVVEKLTEQRQEKLNRLRVAERERDALDGPRKEAEAWVTAEA 261
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A2R5GKU7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKU7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.210e-27
Identity = 58/95 (61.05%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREK 285
            RF+  QGEVEQI++MKPKA +PHEEGLLEYLE+IIGS++++EA EEA K V+ L + R EKL R+KV EKE++SL+ AK+EA+EFL+ +A + +K
Sbjct:  185 RFLILQGEVEQISLMKPKAQSPHEEGLLEYLEEIIGSNKYLEAIEEATKSVEELTQSRTEKLGRVKVVEKEKESLEDAKNEAEEFLKKEAQLMQK 279
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.580e-26
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMKPKA  PH+EGLLEYLEDIIGS+R VEATE A K V+  +E R E+LNRLK AEKE+++L+GAK EA+ FL+ +  +R+  N
Sbjct:  185 RFLILQGEVEQIAMMKPKAEGPHDEGLLEYLEDIIGSNRHVEATEAAAKEVEERSEARAERLNRLKAAEKEKEALEGAKSEAEAFLQKERDLRKLRN 281
[Close]
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Match: A0A418FLU1_9STRA (Structural maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FLU1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.120e-26
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKMVDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN 291
            RF+  QGEVEQIAMMK KA  PH+EGLLEYLEDIIGS+++VE TEEA+K V++LNE R +KLNR+KV EKE+ +L+ AK EAQE+L  +  +  K N
Sbjct:  144 RFLILQGEVEQIAMMKSKADNPHDEGLLEYLEDIIGSNKYVEPTEEALKQVESLNEARVDKLNRVKVVEKEKGNLEDAKAEAQEYLEKERDVYVKTN 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86799.16238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI3.640e-3575.26Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S3GYG4_9STRA1.380e-3164.95Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6G0WSE3_9STRA8.000e-2965.98Structural maintenance of chromosomes protein 4 n=... [more]
A0A485LJE1_9STRA2.030e-2864.95Structural maintenance of chromosomes protein n=1 ... [more]
UPI0003F084129.580e-2863.92structural maintenance of chromosomes protein 4-li... [more]
A7S6N1_NEMVE3.320e-2761.86Structural maintenance of chromosomes protein n=3 ... [more]
A0A7S2K8C5_9DINO4.770e-2765.56Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2R5GKU7_9STRA6.210e-2761.05Structural maintenance of chromosomes protein n=1 ... [more]
A0A835YML7_9STRA1.580e-2663.92Structural maintenance of chromosomes protein n=1 ... [more]
A0A418FLU1_9STRA2.120e-2662.89Structural maintenance of chromosomes protein 4 (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86799contigH-elongata_contig86799:1694..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
KEGG koko:K06675
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.293909-CDS-H-elongata_contig86799:1693..18011622931269.293909-CDS-H-elongata_contig86799:1693..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86799 1694..1801 -
1691679767.1488712-CDS-H-elongata_contig86799:1693..18011691679767.1488712-CDS-H-elongata_contig86799:1693..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86799 1694..1801 -
1622931269.312882-CDS-H-elongata_contig86799:2096..22791622931269.312882-CDS-H-elongata_contig86799:2096..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86799 2097..2279 -
1691679767.1587071-CDS-H-elongata_contig86799:2096..22791691679767.1587071-CDS-H-elongata_contig86799:2096..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86799 2097..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86799.16238.1prot_H-elongata_contig86799.16238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86799 1694..2279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86799.16238.1

>prot_H-elongata_contig86799.16238.1 ID=prot_H-elongata_contig86799.16238.1|Name=mRNA_H-elongata_contig86799.16238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
RFVPFQGEVEQIAMMKPKALTPHEEGLLEYLEDIIGSDRFVEATEEAVKM
VDALNEQRNEKLNRLKVAEKERDSLKGAKDEAQEFLRLDAVIREKLN
back to top

mRNA from alignment at H-elongata_contig86799:1694..2279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86799.16238.1 ID=mRNA_H-elongata_contig86799.16238.1|Name=mRNA_H-elongata_contig86799.16238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig86799:1694..2279- (Himanthalia elongata Himel1 dioecious)
CGTTTCGTTCCGTTTCAGGGAGAGGTAGAGCAGATCGCGATGATGAAACC
CAAGGCCCTGACTCCGCACGAAGAAGGTCTGCTAGAGTACCTGGAGGATA
TCATTGGGTCCGACCGCTTTGTTGAAGCCACGGAAGAGGCGGTAAAGATG
GTGGACGCCCTCAACGAGCAGCGCAACGAGAAGGTAAAATATTTTGTAAA
AGTGCAAATTTCTGTTTTTATGACGTGGCGCGTGCTTTCGCGTATTAGCA
CGCGCCTTTTTTTTGGACGAAAACGTTTTGTGCGCATATATGTAAGGTGC
AGCCTGGTTCTCTTGAAAACGCGATTTTTTCTGTGTCGACGGAATGAAGC
AATTGTCTTGATGGCCGTTCGGACAAATATCTGTTACGCCGAGGGTGATA
TACTCGTATACCCTTTCAGCCGTTGTGGCCGCCGCCACCGACGTGTTCTC
TGGCAATATCCGCGTTTCCCGTGAGCAGCTGAATCGGCTCAAGGTCGCCG
AAAAAGAGCGAGATTCGCTGAAGGGAGCAAAAGACGAGGCGCAAGAGTTT
TTGCGCCTCGATGCCGTCATCCGGGAGAAGCTCAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig86799:1694..2279-

>mRNA_H-elongata_contig86799.16238.1 ID=mRNA_H-elongata_contig86799.16238.1|Name=mRNA_H-elongata_contig86799.16238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig86799:1694..2279- (Himanthalia elongata Himel1 dioecious)
CGTTTCGTTCCGTTTCAGGGAGAGGTAGAGCAGATCGCGATGATGAAACC
CAAGGCCCTGACTCCGCACGAAGAAGGTCTGCTAGAGTACCTGGAGGATA
TCATTGGGTCCGACCGCTTTGTTGAAGCCACGGAAGAGGCGGTAAAGATG
GTGGACGCCCTCAACGAGCAGCGCAACGAGAAGCGTTTCGTTCCGTTTCA
GGGAGAGGTAGAGCAGATCGCGATGATGAAACCCAAGGCCCTGACTCCGC
ACGAAGAAGGTCTGCTAGAGTACCTGGAGGATATCATTGGGTCCGACCGC
TTTGTTGAAGCCACGGAAGAGGCGGTAAAGATGGTGGACGCCCTCAACGA
GCAGCGCAACGAGAAGCTGAATCGGCTCAAGGTCGCCGAAAAAGAGCGAG
ATTCGCTGAAGGGAGCAAAAGACGAGGCGCAAGAGTTTTTGCGCCTCGAT
GCCGTCATCCGGGAGAAGCTCAACCTGAATCGGCTCAAGGTCGCCGAAAA
AGAGCGAGATTCGCTGAAGGGAGCAAAAGACGAGGCGCAAGAGTTTTTGC
GCCTCGATGCCGTCATCCGGGAGAAGCTCAAC
back to top